Rorug05G0382400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0019884
Physical Location & Seq
Forward (+)
51843765 .. 51844500
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0382400.1

Sequence Viewer

Length: 297 bp
ATGGAGATCCCAGAAAAGCTCCTCAAGTTCAAGTACCACTTTCTCGGTGCACTCATTTTCTGCCTCACCCTTTACTCCCTTGCCCTCTTTGCGCCAAGATTTCTAACCATCCTGGCCTACTTTTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCTTTGCCGTCGTCGTCTTCGGGAAGACCTCGTTACCGGGCACCGATGCTCATGCAGCTGACAAAGCCGGCGAAGGCCTCCTCGATTATGTAGCCGGCCAACCGGACCACACCGTCGTGGAAAGTTACCCTTCTGAAATGTAA

Protein Analysis

98

Amino Acids

10.91

Weight (kDa)

5.42

Isoelectric Point (pI)

18.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019884)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0107141 RchiOBHm_Chr5g0050941
rosa_multiflora Rmu_sc0002539.1_g000047 Rmu_sc0002676.1_g000003
rosa_roxburghii Rroxscaffold_3G00239490
rosa_rugosa Rorug05G0382400
rosa_samantha Rh5DG359800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 194
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 111
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 2 cut(s) 19, 212
AluI AGCT 2 cut(s) 19, 212
Alw21I GWGCWC 1 cut(s) 52
Alw44I GTGCAC 1 cut(s) 48
AoxI GGCC 4 cut(s) 114, 125, 229, 250
ApaLI GTGCAC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 2 cut(s) 52, 197
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 163, 185
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 192
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 113, 192
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 113, 192
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 2 cut(s) 163, 185
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 2 cut(s) 221, 248
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 11, 224
BseSI GKGCMC 2 cut(s) 52, 197
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 4 cut(s) 116, 127, 231, 252
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 4 cut(s) 191, 222, 249, 257
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 4 cut(s) 116, 127, 231, 252
Bsp1286I GDGCHC 2 cut(s) 52, 197
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 4 cut(s) 116, 127, 231, 252
BspLI GGNNCC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 221, 248
BssAI RCCGGY 2 cut(s) 221, 248
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 2 cut(s) 137, 155
BstC8I GCNNGC 2 cut(s) 223, 250
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 3 cut(s) 89, 209, 218
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 111, 190
BstSLI GKGCMC 2 cut(s) 52, 197
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 163, 185
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 4 cut(s) 116, 127, 231, 252
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 223, 250
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 2 cut(s) 221, 248
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 206
CviJI RGCY 8 cut(s) 19, 116, 127, 212, 221, 231, 248, 252
CviKI_1 RGCY 8 cut(s) 19, 116, 127, 212, 221, 231, 248, 252
CviQI GTAC 1 cut(s) 34
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 137, 155
EarI CTCTTC 2 cut(s) 137, 155
Eco147I AGGCCT 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 207, 243
FalI AAGNNNNNCTT 3 cut(s) 23, 55, 268
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 210
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 4 cut(s) 116, 127, 231, 252
HapII CCGG 4 cut(s) 191, 222, 249, 257
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HpaII CCGG 4 cut(s) 191, 222, 249, 257
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 50
Hpy99I CGWCG 3 cut(s) 167, 170, 272
HpyAV CCTTC 2 cut(s) 221, 294
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 2 cut(s) 50, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 209, 218
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 2 cut(s) 221, 248
KroNI GCCGGC 2 cut(s) 223, 250
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 7 cut(s) 24, 98, 125, 204, 235, 262, 270
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 190
MaeIII GTNAC 2 cut(s) 186, 278
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 124, 142, 163, 190
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 52, 197
MnlI CCTC 9 cut(s) 32, 74, 95, 138, 146, 164, 193, 242, 245
MroNI GCCGGC 2 cut(s) 221, 248
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 4 cut(s) 191, 222, 249, 257
MspR9I CCNGG 2 cut(s) 113, 192
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 89, 209, 218
NaeI GCCGGC 2 cut(s) 223, 250
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 2 cut(s) 221, 248
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 269
PceI AGGCCT 1 cut(s) 231
PdiI GCCGGC 2 cut(s) 223, 250
PkrI GCNGC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 269
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 113, 192
SduI GDGCHC 2 cut(s) 52, 197
SetI ASST 3 cut(s) 21, 185, 214
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SseBI AGGCCT 1 cut(s) 231
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 111, 190
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 237
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 209
TspRI CASTG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.