Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002539.1

Orthogroup ID

OG0019884

Physical Location & Seq

Genomic Coordinates Reverse (-)

165676 .. 166794

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002539.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaacacgagaggcgagcctagcacctgcagtagtagatttattgctactaatcgagcaatcaaaagaggagatccagcctggcacgagcggctaaaccctgaccgtcaaggtcgtcaccaccaatctggtcgagaggtcacctccaagaatggcggtgctcgatcctctctctcctctctccctcttcagccccctcgcatcactgagtgcctcgttagcgatgagactagaaccattgtcttcattgctcgcaatgaccaagttgacattatgaagcctggtaccactgtgattccacgcaatgcaaagattgacatgttcatcaaaggcactatgaggcttgcagttgataaatggggtcgtgttgaagtcacagaaccagccagctttgaagttaaggaggtcaacaatctttctcttgtcgagtatgaattacttagtgttgctgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 ko03440 ko03460 map03030 map03420 map03430 map03440 map03460

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

16.92

Weight (kDa)

9.09

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019884)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0107141 RchiOBHm_Chr5g0050941
rosa_multiflora	Rmu_sc0002539.1_g000047 Rmu_sc0002676.1_g000003
rosa_roxburghii	Rroxscaffold_3G00239490
rosa_rugosa	Rorug05G0382400
rosa_samantha	Rh5DG359800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	35
Acc36I	ACCTGC	1 cut(s)	35
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	91
AciI	CCGC	2 cut(s)	91, 156
AclWI	GGATC	2 cut(s)	68, 159
AcuI	CTGAAG	1 cut(s)	173
AdeI	CACNNNGTG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	286
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	371, 395
AjnI	CCWGG	2 cut(s)	80, 280
AluBI	AGCT	1 cut(s)	390
AluI	AGCT	1 cut(s)	390
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	68, 159
Asp718I	GGTACC	1 cut(s)	284
AsuHPI	GGTGA	2 cut(s)	110, 133
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BanI	GGYRCC	1 cut(s)	284
BauI	CACGAG	2 cut(s)	7, 86
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	163
BciT130I	CCWGG	2 cut(s)	82, 282
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	21, 231
BfmI	CTRYAG	1 cut(s)	28
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
Bme1390I	CCNGG	2 cut(s)	82, 282
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	82, 282
BmsI	GCATC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	235
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
Bse3DI	GCAATG	3 cut(s)	246, 262, 310
BseBI	CCWGG	2 cut(s)	82, 282
BseMI	GCAATG	3 cut(s)	246, 262, 310
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	2 cut(s)	84, 166
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	73, 164
BspACI	CCGC	2 cut(s)	91, 156
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	68, 159
BspT107I	GGYRCC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	3 cut(s)	246, 262, 310
BssMI	GATC	2 cut(s)	73, 164
BssSI	CACGAG	2 cut(s)	7, 86
Bst2BI	CACGAG	2 cut(s)	7, 86
Bst2UI	CCWGG	2 cut(s)	82, 282
Bst4CI	ACNGT	2 cut(s)	107, 292
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	17, 253, 345, 388
BstDEI	CTNAG	2 cut(s)	207, 440
BstEII	GGTNACC	1 cut(s)	139
BstKTI	GATC	2 cut(s)	76, 167
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	2 cut(s)	73, 164
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 91, 219
BstNI	CCWGG	2 cut(s)	82, 282
BstNSI	RCATGY	1 cut(s)	322
BstPI	GGTNACC	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	80, 280
BstSFI	CTRYAG	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	204, 288
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	4 cut(s)	17, 253, 345, 388
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	8 cut(s)	19, 80, 94, 193, 280, 343, 386, 390
CviKI_1	RGCY	8 cut(s)	19, 80, 94, 193, 280, 343, 386, 390
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	2 cut(s)	207, 440
DpnI	GATC	2 cut(s)	75, 166
DpnII	GATC	2 cut(s)	73, 164
DraIII	CACNNNGTG	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	173
Eco91I	GGTNACC	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	80, 280
FaeI	CATG	1 cut(s)	322
FaiI	YATR	4 cut(s)	275, 320, 338, 432
FatI	CATG	1 cut(s)	318
Fnu4HI	GCNGC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	92
FspBI	CTAG	2 cut(s)	21, 231
GluI	GCNGC	1 cut(s)	92
Hin1II	CATG	1 cut(s)	322
HincII	GTYRAC	2 cut(s)	268, 409
HindII	GTYRAC	2 cut(s)	268, 409
HinfI	GANTC	1 cut(s)	295
HphI	GGTGA	2 cut(s)	110, 133
Hpy166II	GTNNAC	2 cut(s)	268, 409
Hpy188III	TCNNGA	1 cut(s)	134
Hpy8I	GTNNAC	2 cut(s)	268, 409
HpyCH4III	ACNGT	2 cut(s)	107, 292
HpyCH4V	TGCA	3 cut(s)	30, 308, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 91, 219
HpyF3I	CTNAG	2 cut(s)	207, 440
Hsp92II	CATG	1 cut(s)	322
KpnI	GGTACC	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	73, 164
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	2 cut(s)	21, 231
MaeIII	GTNAC	3 cut(s)	116, 139, 373
MalI	GATC	2 cut(s)	75, 166
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	2 cut(s)	73, 164
MboII	GAAGA	2 cut(s)	179, 235
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	1 cut(s)	434
MseI	TTAA	1 cut(s)	399
MspR9I	CCNGG	2 cut(s)	82, 282
MvaI	CCWGG	2 cut(s)	82, 282
MwoI	GCNNNNNNNGC	3 cut(s)	21, 91, 219
NdeII	GATC	2 cut(s)	73, 164
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	3 cut(s)	116, 139, 373
NspI	RCATGY	1 cut(s)	322
PaqCI	CACCTGC	1 cut(s)	35
PciI	ACATGT	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	93
PscI	ACATGT	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	80, 280
PspEI	GGTNACC	1 cut(s)	139
PspGI	CCWGG	2 cut(s)	80, 280
PspN4I	GGNNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	1 cut(s)	92
Sau3AI	GATC	2 cut(s)	73, 164
ScrFI	CCNGG	2 cut(s)	82, 282
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	6 cut(s)	29, 115, 141, 146, 392, 408
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	434
SsiI	CCGC	2 cut(s)	91, 156
SspMI	CTAG	2 cut(s)	21, 231
StyD4I	CCNGG	2 cut(s)	80, 280
TaaI	ACNGT	2 cut(s)	107, 292
TaqI	TCGA	4 cut(s)	55, 133, 163, 426
TasI	AATT	1 cut(s)	434
TauI	GCSGC	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TscAI	CASTG	2 cut(s)	211, 295
TseFI	GTSAC	3 cut(s)	116, 139, 373
Tsp45I	GTSAC	3 cut(s)	116, 139, 373
TspDTI	ATGAA	5 cut(s)	17, 235, 290, 313, 447
TspRI	CASTG	2 cut(s)	211, 295
XceI	RCATGY	1 cut(s)	322
XspI	CTAG	2 cut(s)	21, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.