Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018947

Physical Location & Seq

Genomic Coordinates Reverse (-)

52254289 .. 52256117

Gene Structure 1829 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32873

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGGGATCCTGCATTCAGTGGAACAAATGTACTATGAAGGACAGTTTGCTCCTATTTCGGAAATAGATGTCGAAGAAGTTGAGGCGCCAGCTGTCAGTGTGGTGGAAGCTACCAAGAAGGAGCTGGAGACAGCATTGATGGAGATGGTTAAGCAGGATAATGGTCGACAATTGCATGCTAGGTTTGTATGGAGACGAAGAGTGCATCAAAGGCTACTGGCTACATTGCTTGCTTCACAGGGTTTTTACTATTTTGGTGAACTTAATGACTCACTATCTTATGCCCTTGGAGCTGGATCCTTATTTGATGTGCAGGAGGATTATGATTACATTCCTATTGCATTGTTAGAAGTGAACTGGAAATATGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0019538 GO:0019941 GO:0022624 GO:0030163 GO:0031597 GO:0032991 GO:0034515 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0051603 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

PC_rep

Protein Analysis

124

Amino Acids

14.22

Weight (kDa)

4.67

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPN2_N	PF21505	67 - 111	1.5e-09	26S proteasome subunit RPN2, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359681 RchiOBHm_Chr2g0133981 RchiOBHm_Chr4g0423571 RchiOBHm_Chr5g0051241 RchiOBHm_Chr6g0262751
rosa_laevigata	RLG00000015170 RLG00000024147
rosa_samantha	Rh5DG362100 Rh7AG349700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	166
AclWI	GGATC	3 cut(s)	14, 291, 304
AcsI	RAATTY	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	32
AluBI	AGCT	4 cut(s)	92, 110, 124, 293
AluI	AGCT	4 cut(s)	92, 110, 124, 293
Alw26I	GTCTC	2 cut(s)	122, 187
AlwI	GGATC	3 cut(s)	14, 291, 304
ApoI	RAATTY	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	269
BamHI	GGATCC	2 cut(s)	6, 296
BanI	GGYRCC	1 cut(s)	85
BccI	CCATC	2 cut(s)	133, 139
BcoDI	GTCTC	2 cut(s)	122, 187
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	8, 87, 298
BmsI	GCATC	1 cut(s)	214
BpmI	CTGGAG	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	286
Bse1I	ACTGG	2 cut(s)	222, 362
Bse3DI	GCAATG	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	222, 362
BsgI	GTGCAG	1 cut(s)	332
BshNI	GGYRCC	1 cut(s)	85
BsmAI	GTCTC	2 cut(s)	122, 187
BsmBI	CGTCTC	1 cut(s)	187
BsmI	GAATGC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	6, 296
BspLI	GGNNCC	3 cut(s)	8, 87, 298
BspPI	GGATC	3 cut(s)	14, 291, 304
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	222, 362
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	2 cut(s)	6, 296
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	45
Bst6I	CTCTTC	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	86
BstC8I	GCNNGC	3 cut(s)	90, 177, 231
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	9, 299
BstMAI	GTCTC	2 cut(s)	122, 187
BstMBI	GATC	2 cut(s)	6, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 290
BstNSI	RCATGY	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	6, 296
BstYI	RGATCY	2 cut(s)	6, 296
BtsIMutI	CAGTG	2 cut(s)	24, 103
Cac8I	GCNNGC	3 cut(s)	90, 177, 231
CfoI	GCGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	6 cut(s)	92, 110, 124, 214, 221, 293
CviKI_1	RGCY	6 cut(s)	92, 110, 124, 214, 221, 293
CviQI	GTAC	1 cut(s)	31
DinI	GGCGCC	1 cut(s)	87
DpnI	GATC	2 cut(s)	8, 298
DpnII	GATC	2 cut(s)	6, 296
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	286
EgeI	GGCGCC	1 cut(s)	87
EheI	GGCGCC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	187
FaeI	CATG	1 cut(s)	179
FaiI	YATR	6 cut(s)	36, 177, 190, 282, 324, 366
FatI	CATG	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	89
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HincII	GTYRAC	1 cut(s)	167
HindII	GTYRAC	1 cut(s)	167
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	3 cut(s)	167, 260, 355
Hpy188I	TCNGA	1 cut(s)	61
Hpy8I	GTNNAC	3 cut(s)	167, 260, 355
HpyAV	CCTTC	2 cut(s)	32, 112
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4V	TGCA	5 cut(s)	13, 175, 205, 313, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 290
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	179
HspAI	GCGC	1 cut(s)	86
KasI	GGCGCC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	6, 296
LmnI	GCTCC	3 cut(s)	55, 121, 290
LpnPI	CCDG	9 cut(s)	23, 102, 110, 140, 203, 224, 279, 299, 343
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	180
MalI	GATC	2 cut(s)	8, 298
MboI	GATC	2 cut(s)	6, 296
MboII	GAAGA	2 cut(s)	86, 210
MfeI	CAATTG	1 cut(s)	170
MflI	RGATCY	2 cut(s)	6, 296
MluCI	AATT	2 cut(s)	170, 369
Mly113I	GGCGCC	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	2 cut(s)	76, 310
MseI	TTAA	2 cut(s)	150, 264
MspA1I	CMGCKG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	170
Mva1269I	GAATGC	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	211, 290
NarI	GGCGCC	1 cut(s)	86
NdeII	GATC	2 cut(s)	6, 296
NlaIII	CATG	1 cut(s)	179
NlaIV	GGNNCC	3 cut(s)	8, 87, 298
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PctI	GAATGC	1 cut(s)	13
PleI	GAGTC	1 cut(s)	263
PluTI	GGCGCC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	8, 87, 298
PsuI	RGATCY	2 cut(s)	6, 296
PvuII	CAGCTG	1 cut(s)	92
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SalI	GTCGAC	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	150, 264
Sau3AI	GATC	2 cut(s)	6, 296
SchI	GAGTC	1 cut(s)	263
SetI	ASST	5 cut(s)	94, 112, 126, 185, 295
SfaNI	GCATC	1 cut(s)	214
SfoI	GGCGCC	1 cut(s)	87
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	2 cut(s)	170, 369
SspDI	GGCGCC	1 cut(s)	85
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	45
TaqI	TCGA	2 cut(s)	72, 166
TasI	AATT	2 cut(s)	170, 369
TatI	WGTACW	1 cut(s)	30
Tru1I	TTAA	2 cut(s)	150, 264
Tru9I	TTAA	2 cut(s)	150, 264
TscAI	CASTG	2 cut(s)	24, 103
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	2 cut(s)	24, 103
XapI	RAATTY	1 cut(s)	369
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.