RLG00000015170

RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)- acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
62616741 .. 62631016
14276 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015170

Sequence Viewer

Length: 489 bp
ATGAGTTTCTATGGAGAACTTGCAAATAGGGTTGTGGAGATTGATATGCCAGTCATGGTTCAGAATGGCATCTCCATTCTACATGGTTACAGTTCTGAGGAGGTTAAGAAGGCTAAAAGTGGCAGGGAATTGAAAGACAATGTTATAATATTTCTACGAGAAATCTTGGCATTCAGTGGGTACTATGAAGGACAGTTTGCTCCTATTCCGGAAATAGATGTCGAAGAAGTTGAGGCACCAGCTGTCAGTGTGGTGGAAGCTACCAAGAAGGTTTCATTGCTTGAGGAAAATATAAAACCCAGAACAAATCTTCCCCATTTGCTCGTGCATCTTCGTGAAAGACGACCAGATTTAGCGTTTAACTCTGCTTATTCCCTGCCACCTAAAGCTGAGGAGCTGGAGACAGCATTGATGGAGATGGTTAAGCAGGATAATCGTCGACAATTGCATGCTAGGGTATTAGATCCAGAAAACTTTTATATGTTGTAG

Protein Analysis

163

Amino Acids

18.51

Weight (kDa)

5.18

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 235
AccI GTMKAC 1 cut(s) 439
AccIII TCCGGA 1 cut(s) 208
AclWI GGATC 1 cut(s) 458
AfaI GTAC 1 cut(s) 182
AgsI TTSAA 1 cut(s) 133
AloI GAACNNNNNNTCC 2 cut(s) 295, 327
AluBI AGCT 4 cut(s) 242, 260, 389, 397
AluI AGCT 4 cut(s) 242, 260, 389, 397
Alw26I GTCTC 1 cut(s) 395
AlwI GGATC 1 cut(s) 458
Aor13HI TCCGGA 1 cut(s) 208
BanI GGYRCC 1 cut(s) 235
BauI CACGAG 1 cut(s) 323
BbvCI CCTCAGC 1 cut(s) 390
BccI CCATC 2 cut(s) 406, 412
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 237
BmsI GCATC 2 cut(s) 78, 337
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 302
BsaWI WCCGGW 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 275
BseAI TCCGGA 1 cut(s) 208
BseMI GCAATG 1 cut(s) 275
BseMII CTCAG 2 cut(s) 87, 381
BseNI ACTGG 1 cut(s) 50
BseRI GAGGAG 2 cut(s) 113, 407
BshNI GGYRCC 1 cut(s) 235
BsiSI CCGG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 170
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 463
BspCNI CTCAG 2 cut(s) 88, 382
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 237
BspPI GGATC 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 50
BssMI GATC 1 cut(s) 463
BssSI CACGAG 1 cut(s) 323
Bst2BI CACGAG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 92, 195
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 2 cut(s) 96, 390
BstKTI GATC 1 cut(s) 466
BstMAI GTCTC 1 cut(s) 395
BstMBI GATC 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 452
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BtsIMutI CAGTG 2 cut(s) 181, 253
Cac8I GCNNGC 1 cut(s) 450
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 55, 83, 449
CviJI RGCY 5 cut(s) 113, 242, 260, 389, 397
CviKI_1 RGCY 5 cut(s) 113, 242, 260, 389, 397
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 96, 390
DpnI GATC 1 cut(s) 465
DpnII GATC 1 cut(s) 463
FaeI CATG 3 cut(s) 58, 86, 452
FatI CATG 3 cut(s) 54, 82, 448
FblI GTMKAC 1 cut(s) 439
FspBI CTAG 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 419
HapII CCGG 1 cut(s) 209
Hin1II CATG 3 cut(s) 58, 86, 452
HincII GTYRAC 1 cut(s) 440
HindII GTYRAC 1 cut(s) 440
HpaII CCGG 1 cut(s) 209
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 2 cut(s) 63, 97
Hpy188III TCNNGA 3 cut(s) 209, 335, 467
Hpy8I GTNNAC 1 cut(s) 440
Hpy99I CGWCG 1 cut(s) 441
HpyAV CCTTC 3 cut(s) 103, 182, 262
HpyCH4III ACNGT 2 cut(s) 92, 195
HpyCH4V TGCA 3 cut(s) 23, 328, 448
HpyF3I CTNAG 2 cut(s) 96, 390
Hsp92II CATG 3 cut(s) 58, 86, 452
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 205, 394
LweI GCATC 2 cut(s) 78, 337
MaeI CTAG 1 cut(s) 453
MaeIII GTNAC 1 cut(s) 86
MalI GATC 1 cut(s) 465
MboI GATC 1 cut(s) 463
MboII GAAGA 3 cut(s) 236, 302, 323
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 463
MluCI AATT 2 cut(s) 128, 443
MnlI CCTC 5 cut(s) 91, 94, 226, 277, 385
MroI TCCGGA 1 cut(s) 208
MseI TTAA 3 cut(s) 105, 360, 423
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 1 cut(s) 209
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 170
NdeII GATC 1 cut(s) 463
NlaIII CATG 3 cut(s) 58, 86, 452
NlaIV GGNNCC 1 cut(s) 237
NspI RCATGY 1 cut(s) 452
PaeI GCATGC 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PctI GAATGC 1 cut(s) 170
PsiI TTATAA 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 237
PsuI RGATCY 1 cut(s) 463
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 333
SalI GTCGAC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 105, 360, 423
Sau3AI GATC 1 cut(s) 463
SetI ASST 7 cut(s) 105, 244, 262, 273, 385, 391, 399
SfaNI GCATC 2 cut(s) 78, 337
SmiMI CAYNNNNRTG 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SphI GCATGC 1 cut(s) 452
Sse9I AATT 2 cut(s) 128, 443
SspI AATATT 1 cut(s) 150
SspMI CTAG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 92, 195
TaqI TCGA 2 cut(s) 222, 439
TasI AATT 2 cut(s) 128, 443
Tru1I TTAA 3 cut(s) 105, 360, 423
Tru9I TTAA 3 cut(s) 105, 360, 423
TscAI CASTG 2 cut(s) 181, 253
TspDTI ATGAA 2 cut(s) 201, 264
TspRI CASTG 2 cut(s) 181, 253
XceI RCATGY 1 cut(s) 452
XmiI GTMKAC 1 cut(s) 439
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.