Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0018947

Physical Location & Seq

Genomic Coordinates Reverse (-)

54187697 .. 54211849

Gene Structure 24153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG362100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAAAATTGCAAAGCATCCTCTAGTCCTCTGCGCCGATGATTCTGGGGTCTTTTCTACCAGCCTTTCCAACGAGTACAACCTTGCTGCTTCTGCATTTGGTCTTGGAAGGAGGGAAATATTTCAGCTAACGAGAAATTCGTGCAAGTTTATATTTGCTGATGATGGAGTGAAGAGAGAATTAAAGGAGATTTTTAGTCCACCAGAACAGAAGCTCAACCAATCTTTCGAATTTAGGGGGCTGTGGAGATTGATATGCAGGTCATGGTTCAGGTACTATGAAGGACAGTTTGCTCCTATTTCGGAAATAGATGTCGAAGAAGTTGAGGCGCCAGCTGTCAGTGTGGTGGAAGCTACCAAGAAGGAGCTGGAGACAGCATTGATGGAGATGGTTAAGCAGGATAATGGTCGACAATTGCATGCTAGGTTTGTATGGAGACGAAGAGTGCATCAAAGGCTACTGGCTACATTGCTTGCTTCACAGGGTTTTTACTATTTTGGTGAACTTAATGACTCACTATCTTATGCCCTTGGAGCTGGATCCTTATTTGATGTGCAGGAGGATTATGATTACATTCCTATTGAGCCTATGATATGTCTACGCATTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006152 GO:0006154 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009116 GO:0009119 GO:0009163 GO:0009164 GO:0009987 GO:0016787 GO:0016810 GO:0016814 GO:0017144 GO:0018130 GO:0019239 GO:0019438 GO:0019439 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0042278 GO:0042451 GO:0042454 GO:0042455 GO:0042737 GO:0043094 GO:0043101 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046085 GO:0046102 GO:0046103 GO:0046128 GO:0046129 GO:0046130 GO:0046483 GO:0046700 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072523 GO:1901135 GO:1901136 GO:1901137 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko05340 map00230 map01100 map05340

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

203

Amino Acids

23.38

Weight (kDa)

5.51

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_deaminase	PF00962	7 - 63	1.2e-07	Adenosine deaminase
RPN2_N	PF21505	148 - 192	3e-09	26S proteasome subunit RPN2, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018947)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0359681 RchiOBHm_Chr2g0133981 RchiOBHm_Chr4g0423571 RchiOBHm_Chr5g0051241 RchiOBHm_Chr6g0262751
rosa_laevigata	RLG00000015170 RLG00000024147
rosa_samantha	Rh5DG362100 Rh7AG349700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	2 cut(s)	409, 598
AclWI	GGATC	2 cut(s)	534, 547
AcsI	RAATTY	2 cut(s)	136, 230
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	2 cut(s)	77, 275
AluBI	AGCT	6 cut(s)	127, 214, 335, 353, 367, 536
AluI	AGCT	6 cut(s)	127, 214, 335, 353, 367, 536
Alw26I	GTCTC	2 cut(s)	365, 430
AlwI	GGATC	2 cut(s)	534, 547
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	136, 230
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	2 cut(s)	35, 331
AsuHPI	GGTGA	1 cut(s)	512
AsuII	TTCGAA	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	328
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	3 cut(s)	158, 376, 382
BcoDI	GTCTC	2 cut(s)	365, 430
BfaI	CTAG	2 cut(s)	23, 423
BfoI	RGCGCY	1 cut(s)	332
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmiI	GGNNCC	2 cut(s)	330, 541
BmsI	GCATC	2 cut(s)	25, 457
BpmI	CTGGAG	1 cut(s)	389
Bpu14I	TTCGAA	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	529
Bse1I	ACTGG	1 cut(s)	465
Bse3DI	GCAATG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	529
BseGI	GGATG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	465
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	575
BshNI	GGYRCC	1 cut(s)	328
BsmAI	GTCTC	2 cut(s)	365, 430
BsmBI	CGTCTC	1 cut(s)	430
Bsp119I	TTCGAA	1 cut(s)	228
Bsp143I	GATC	1 cut(s)	539
BspLI	GGNNCC	2 cut(s)	330, 541
BspMI	ACCTGC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	534, 547
BspT104I	TTCGAA	1 cut(s)	228
BspT107I	GGYRCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	1 cut(s)	529
BssMI	GATC	1 cut(s)	539
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	529
Bst4CI	ACNGT	1 cut(s)	288
Bst6I	CTCTTC	2 cut(s)	167, 436
BstACI	GRCGYC	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	333, 420, 474
BstF5I	GGATG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	35, 331
BstKTI	GATC	1 cut(s)	542
BstMAI	GTCTC	2 cut(s)	365, 430
BstMBI	GATC	1 cut(s)	539
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 454, 533
BstNSI	RCATGY	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	333, 420, 474
CfoI	GCGC	2 cut(s)	35, 331
Csp6I	GTAC	2 cut(s)	76, 274
CviAII	CATG	2 cut(s)	264, 419
CviQI	GTAC	2 cut(s)	76, 274
DinI	GGCGCC	1 cut(s)	330
DpnI	GATC	1 cut(s)	541
DpnII	GATC	1 cut(s)	539
Eam1104I	CTCTTC	2 cut(s)	167, 436
EarI	CTCTTC	2 cut(s)	167, 436
Eco130I	CCWWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	529
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	2 cut(s)	267, 422
FatI	CATG	2 cut(s)	263, 418
FblI	GTMKAC	2 cut(s)	409, 598
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	3
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	2 cut(s)	23, 423
GlaI	GCGC	2 cut(s)	34, 330
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	332
HhaI	GCGC	2 cut(s)	35, 331
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	2 cut(s)	267, 422
Hin6I	GCGC	2 cut(s)	33, 329
HinP1I	GCGC	2 cut(s)	33, 329
HincII	GTYRAC	1 cut(s)	410
HindII	GTYRAC	1 cut(s)	410
HinfI	GANTC	2 cut(s)	41, 512
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	4 cut(s)	200, 410, 503, 599
Hpy188I	TCNGA	1 cut(s)	304
Hpy8I	GTNNAC	4 cut(s)	200, 410, 503, 599
HpyAV	CCTTC	3 cut(s)	102, 275, 355
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	7 cut(s)	11, 95, 144, 258, 418, 448, 556
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 454, 533
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	267, 422
HspAI	GCGC	2 cut(s)	33, 329
KasI	GGCGCC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	539
LmnI	GCTCC	3 cut(s)	298, 364, 533
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	25, 457
MaeI	CTAG	2 cut(s)	23, 423
MalI	GATC	1 cut(s)	541
MboI	GATC	1 cut(s)	539
MboII	GAAGA	3 cut(s)	184, 329, 453
MfeI	CAATTG	1 cut(s)	413
MflI	RGATCY	1 cut(s)	539
MluCI	AATT	5 cut(s)	6, 136, 179, 230, 413
Mly113I	GGCGCC	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	5 cut(s)	30, 38, 105, 319, 553
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	3 cut(s)	182, 393, 507
MspA1I	CMGCKG	1 cut(s)	335
MunI	CAATTG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	92, 454, 533
NarI	GGCGCC	1 cut(s)	329
NdeII	GATC	1 cut(s)	539
NlaIII	CATG	2 cut(s)	267, 422
NlaIV	GGNNCC	2 cut(s)	330, 541
NspI	RCATGY	1 cut(s)	422
NspV	TTCGAA	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	506
PluTI	GGCGCC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	330, 541
PsuI	RGATCY	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	335
RsaI	GTAC	2 cut(s)	77, 275
RsaNI	GTAC	2 cut(s)	76, 274
SalI	GTCGAC	1 cut(s)	408
SaqAI	TTAA	3 cut(s)	182, 393, 507
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	539
SchI	GAGTC	1 cut(s)	506
SfaNI	GCATC	2 cut(s)	25, 457
SfoI	GGCGCC	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	228
SphI	GCATGC	1 cut(s)	422
Sse9I	AATT	5 cut(s)	6, 136, 179, 230, 413
SspDI	GGCGCC	1 cut(s)	328
SspI	AATATT	1 cut(s)	120
SspMI	CTAG	2 cut(s)	23, 423
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	1 cut(s)	288
TaqI	TCGA	3 cut(s)	228, 315, 409
TasI	AATT	5 cut(s)	6, 136, 179, 230, 413
TatI	WGTACW	1 cut(s)	75
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	182, 393, 507
Tru9I	TTAA	3 cut(s)	182, 393, 507
TscAI	CASTG	1 cut(s)	346
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	17, 294
TspRI	CASTG	1 cut(s)	346
XapI	RAATTY	2 cut(s)	136, 230
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmiI	GTMKAC	2 cut(s)	409, 598
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	23, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.