Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005592

Physical Location & Seq

Genomic Coordinates Reverse (-)

58352911 .. 58357768

Gene Structure 4858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAGATATGAATTTGAACGCGGACGAGTGCTTGCTGACAAGAATGCAAGAGATGTCATTGGATTACCATTTCACAGTTGAACAAGAAGTTGGGTCAGCAACACATGCCTTCTTTAGCTTCAACGGAACTGCTGGTGTGTTGAGAATTGCTACTATTAATGAGGCAGGTGGGTGGAAAGATCGTTCAACAGTGGAGGATATGGATCTTGCTGTCCGAGCTGGTCTCAGAGGCTGGAAATTTTTGTACCTTGGTGACCTTCAGGTGAAAAGTGAACTTCCTAGTACCTTCAATGACTACCGTAACCAGCAGCACCGATGGTCTTGTGGTCCAGCTAATCTGTTCAGGAAAATTGTCATGGAAATAGCAATGAATGAGAAAGTTACATTGTGGAAGAAATTCTATGTCATCTACAGTTTCTTCTTTGTTAGGAAGATCATTGTCCACATGGTGACTTTCTTCTTTTACTGTGTTGTGCTTCCCCTGACCATTTTTGTTCCTGAAGTTGATGTTCCAATTTGGGGAGCAGTTTATATTCCTTCCATCATTGCCATCCTTAACTCAGTTGGAACTCCAAGGTCAGTTCACCTTTTGTTGTACTGGATCCTTTTCGAGAATGTGATGTCCTTGCACCGGACCAAGGCAACTTTAATCGGCCTATTCGGAGCCGGGAGAGCCAATGAATGGGTTGTCACCGAGAAACTGGGAGATGCTGCCAAGAACAAACCAGCCCCCAAATTCTTCAAGAAACCAAAGTTCAAGTTTGGCAACAGACTGCACATGTTGGAGCTGGGATTTGGATTGTTTCTGTTCTTCTGCGGATGCTACGATTATGTACATGGGAAGAACAAGTACTTTATATACCTTTTCCTCCAAACCATCACGTTCTTGATCTGTGGATTTGGTTACGTCGGAACCATCATCCCCACCAGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3 Glycos_transf_2

Protein Analysis

312

Amino Acids

35.78

Weight (kDa)

9.01

Isoelectric Point (pI)

32.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_trans_2_3	PF13632	13 - 163	6.7e-17	Glycosyl transferase family group 2
Glyco_tranf_2_3	PF13641	32 - 110	2.6e-06	Glycosyltransferase like family 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22740
fragaria_vesca	FvH4_3g29980 FvH4_3g29980
malus_domestica	MD03G1133700.v1.1 MD11G1156200.v1.1
prunus_persica	Prupe.6G118300_v2.0.a1 Prupe.6G118300_v2.0.a1
pyrus_communis	pycom03g08980 pycom11g12680
rosa_chinensis	RchiOBHm_Chr5g0055361 RchiOBHm_Chr5g0055401 RchiOBHm_Chr5g0055441
rosa_laevigata	RLG00000034986
rosa_multiflora	Rmu_sc0001673.1_g000029 Rmu_sc0003641.1_g000036
rosa_roxburghii	Rroxscaffold_1G00024910 Rroxscaffold_1G00024940
rosa_rugosa	Rorug05G0292800 Rorug05G0292800 Rorug05G0292900
rosa_samantha	Rh5AG362300 Rh5AG362500 Rh5BG374700 Rh5CG396100 Rh5CG396500
rosa_wichuraiana	Rw5G034070 Rw5G034100 Rw5G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	684
AccII	CGCG	1 cut(s)	23
AciI	CCGC	2 cut(s)	23, 819
AclWI	GGATC	3 cut(s)	213, 598, 611
AcsI	RAATTY	4 cut(s)	13, 239, 398, 737
AcuI	CTGAAG	2 cut(s)	245, 522
AdeI	CACNNNGTG	1 cut(s)	451
AfaI	GTAC	5 cut(s)	248, 286, 599, 837, 854
AfiI	CCNNNNNNNGG	4 cut(s)	521, 633, 640, 684
AflIII	ACRYGT	1 cut(s)	780
AgsI	TTSAA	7 cut(s)	19, 83, 124, 189, 292, 745, 760
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	5 cut(s)	120, 221, 335, 790, 933
AluI	AGCT	5 cut(s)	120, 221, 335, 790, 933
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	3 cut(s)	213, 598, 611
AlwNI	CAGNNNCTG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	655
ApeKI	GCWGC	2 cut(s)	310, 713
ApoI	RAATTY	4 cut(s)	13, 239, 398, 737
AseI	ATTAAT	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	398
AspS9I	GGNCC	2 cut(s)	329, 636
AsuC2I	CCSGG	1 cut(s)	670
AsuHPI	GGTGA	5 cut(s)	266, 277, 463, 578, 685
AvaII	GGWCC	2 cut(s)	329, 636
BamHI	GGATCC	1 cut(s)	603
BarI	GAAGNNNNNNTAC	2 cut(s)	836, 868
BbvI	GCAGC	2 cut(s)	322, 700
BccI	CCATC	5 cut(s)	312, 551, 560, 887, 926
BcnI	CCSGG	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	158
BisI	GCNGC	2 cut(s)	311, 714
BlsI	GCNGC	2 cut(s)	312, 715
BmcAI	AGTACT	1 cut(s)	854
Bme1390I	CCNGG	1 cut(s)	670
Bme18I	GGWCC	2 cut(s)	329, 636
BmgT120I	GGNCC	2 cut(s)	329, 636
BmiI	GGNNCC	3 cut(s)	605, 667, 916
BmrFI	CCNGG	1 cut(s)	670
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	2 cut(s)	700, 812
BmuI	ACTGGG	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpuMI	CCSGG	1 cut(s)	670
BsaBI	GATNNNNATC	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	250, 575, 639
BsaWI	WCCGGW	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	4 cut(s)	521, 633, 640, 684
Bse1I	ACTGG	2 cut(s)	605, 708
Bse3DI	GCAATG	2 cut(s)	375, 546
Bse8I	GATNNNNATC	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	250, 575, 639
BseGI	GGATG	3 cut(s)	552, 827, 921
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	4 cut(s)	521, 633, 640, 684
BseMI	GCAATG	2 cut(s)	375, 546
BseMII	CTCAG	2 cut(s)	241, 576
BseNI	ACTGG	2 cut(s)	605, 708
BseXI	GCAGC	2 cut(s)	322, 700
BseYI	CCCAGC	1 cut(s)	790
BsgI	GTGCAG	1 cut(s)	761
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	657
BsiSI	CCGG	2 cut(s)	634, 669
BslI	CCNNNNNNNGG	4 cut(s)	521, 633, 640, 684
BsmAI	GTCTC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	657
Bso31I	GGTCTC	1 cut(s)	230
Bsp1407I	TGTACA	1 cut(s)	835
Bsp143I	GATC	5 cut(s)	181, 205, 435, 603, 891
BspACI	CCGC	2 cut(s)	23, 819
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	2 cut(s)	240, 575
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	605, 667, 916
BspMI	ACCTGC	1 cut(s)	158
BspPI	GGATC	3 cut(s)	213, 598, 611
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	2 cut(s)	375, 546
BsrGI	TGTACA	1 cut(s)	835
BsrI	ACTGG	2 cut(s)	605, 708
BssECI	CCNNGG	3 cut(s)	250, 575, 639
BssMI	GATC	5 cut(s)	181, 205, 435, 603, 891
BssT1I	CCWWGG	3 cut(s)	250, 575, 639
Bst4CI	ACNGT	5 cut(s)	79, 193, 302, 416, 470
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	835
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	3 cut(s)	227, 562, 936
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	3 cut(s)	552, 827, 921
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	5 cut(s)	184, 208, 438, 606, 894
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	5 cut(s)	181, 205, 435, 603, 891
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 218, 674
BstNSI	RCATGY	2 cut(s)	110, 784
BstPI	GGTNACC	1 cut(s)	254
BstSCI	CCNGG	1 cut(s)	668
BstSFI	CTRYAG	1 cut(s)	412
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	322, 700
BstX2I	RGATCY	2 cut(s)	205, 603
BstYI	RGATCY	2 cut(s)	205, 603
BsuRI	GGCC	1 cut(s)	657
BtsCI	GGATG	3 cut(s)	552, 827, 921
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	35
CaiI	CAGNNNCTG	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	329, 636
Csp6I	GTAC	5 cut(s)	247, 285, 598, 836, 853
CviAII	CATG	5 cut(s)	107, 358, 448, 781, 839
CviQI	GTAC	5 cut(s)	247, 285, 598, 836, 853
DdeI	CTNAG	3 cut(s)	227, 562, 936
DpnI	GATC	5 cut(s)	183, 207, 437, 605, 893
DpnII	GATC	5 cut(s)	181, 205, 435, 603, 891
DraIII	CACNNNGTG	1 cut(s)	451
Eco130I	CCWWGG	3 cut(s)	250, 575, 639
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	329, 636
Eco57I	CTGAAG	2 cut(s)	245, 522
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoT14I	CCWWGG	3 cut(s)	250, 575, 639
ErhI	CCWWGG	3 cut(s)	250, 575, 639
FaeI	CATG	5 cut(s)	110, 361, 451, 784, 842
FatI	CATG	5 cut(s)	106, 357, 447, 780, 838
Fnu4HI	GCNGC	2 cut(s)	311, 714
FokI	GGATG	3 cut(s)	539, 834, 908
Fsp4HI	GCNGC	2 cut(s)	311, 714
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	2 cut(s)	311, 714
GsaI	CCCAGC	1 cut(s)	794
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	2 cut(s)	634, 669
Hin1II	CATG	5 cut(s)	110, 361, 451, 784, 842
HpaII	CCGG	2 cut(s)	634, 669
HphI	GGTGA	5 cut(s)	266, 277, 463, 578, 685
Hpy166II	GTNNAC	3 cut(s)	275, 445, 586
Hpy188I	TCNGA	4 cut(s)	218, 230, 665, 914
Hpy188III	TCNNGA	5 cut(s)	346, 500, 613, 745, 889
Hpy8I	GTNNAC	3 cut(s)	275, 445, 586
Hpy99I	CGWCG	1 cut(s)	914
HpyAV	CCTTC	4 cut(s)	121, 269, 298, 549
HpyCH4III	ACNGT	5 cut(s)	79, 193, 302, 416, 470
HpyCH4IV	ACGT	2 cut(s)	884, 909
HpyCH4V	TGCA	3 cut(s)	49, 631, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 218, 674
HpyF3I	CTNAG	3 cut(s)	227, 562, 936
HpySE526I	ACGT	2 cut(s)	884, 909
Hsp92II	CATG	5 cut(s)	110, 361, 451, 784, 842
Kzo9I	GATC	5 cut(s)	181, 205, 435, 603, 891
LmnI	GCTCC	3 cut(s)	524, 665, 787
Lsp1109I	GCAGC	2 cut(s)	322, 700
LweI	GCATC	2 cut(s)	700, 812
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	2 cut(s)	884, 909
MaeIII	GTNAC	6 cut(s)	254, 302, 382, 451, 691, 905
MalI	GATC	5 cut(s)	183, 207, 437, 605, 893
MboI	GATC	5 cut(s)	181, 205, 435, 603, 891
MboII	GAAGA	7 cut(s)	406, 412, 445, 451, 733, 805, 856
MflI	RGATCY	2 cut(s)	205, 603
MluCI	AATT	7 cut(s)	13, 147, 239, 351, 398, 516, 737
MmeI	TCCRAC	3 cut(s)	547, 765, 892
MnlI	CCTC	4 cut(s)	157, 190, 224, 881
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	3 cut(s)	159, 558, 650
MspI	CCGG	2 cut(s)	634, 669
MspR9I	CCNGG	1 cut(s)	670
Mva1269I	GAATGC	1 cut(s)	51
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	107, 218, 674
NciI	CCSGG	1 cut(s)	670
NdeII	GATC	5 cut(s)	181, 205, 435, 603, 891
NlaIII	CATG	5 cut(s)	110, 361, 451, 784, 842
NlaIV	GGNNCC	3 cut(s)	605, 667, 916
NmuCI	GTSAC	3 cut(s)	254, 451, 691
NspI	RCATGY	2 cut(s)	110, 784
PaqCI	CACCTGC	1 cut(s)	158
PciI	ACATGT	1 cut(s)	780
PctI	GAATGC	1 cut(s)	51
PdmI	GAANNNNTTC	1 cut(s)	398
PflMI	CCANNNNNTGG	1 cut(s)	684
PkrI	GCNGC	2 cut(s)	312, 715
PscI	ACATGT	1 cut(s)	780
PshBI	ATTAAT	1 cut(s)	159
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	790
PspN4I	GGNNCC	3 cut(s)	605, 667, 916
PspPI	GGNCC	2 cut(s)	329, 636
PstNI	CAGNNNCTG	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	205, 603
RsaI	GTAC	5 cut(s)	248, 286, 599, 837, 854
RsaNI	GTAC	5 cut(s)	247, 285, 598, 836, 853
SaqAI	TTAA	3 cut(s)	159, 558, 650
SatI	GCNGC	2 cut(s)	311, 714
Sau3AI	GATC	5 cut(s)	181, 205, 435, 603, 891
Sau96I	GGNCC	2 cut(s)	329, 636
ScaI	AGTACT	1 cut(s)	854
ScrFI	CCNGG	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	700, 812
SfcI	CTRYAG	1 cut(s)	412
SinI	GGWCC	2 cut(s)	329, 636
Sse9I	AATT	7 cut(s)	13, 147, 239, 351, 398, 516, 737
SsiI	CCGC	2 cut(s)	23, 819
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	668
StyI	CCWWGG	3 cut(s)	250, 575, 639
TaaI	ACNGT	5 cut(s)	79, 193, 302, 416, 470
TaiI	ACGT	2 cut(s)	887, 912
TaqI	TCGA	1 cut(s)	612
TasI	AATT	7 cut(s)	13, 147, 239, 351, 398, 516, 737
TatI	WGTACW	3 cut(s)	597, 835, 852
Tru1I	TTAA	3 cut(s)	159, 558, 650
Tru9I	TTAA	3 cut(s)	159, 558, 650
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	3 cut(s)	254, 451, 691
TseI	GCWGC	2 cut(s)	310, 713
Tsp45I	GTSAC	3 cut(s)	254, 451, 691
TspDTI	ATGAA	3 cut(s)	26, 386, 696
TspGWI	ACGGA	1 cut(s)	141
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	684
VpaK11BI	GGWCC	2 cut(s)	329, 636
VspI	ATTAAT	1 cut(s)	159
XapI	RAATTY	4 cut(s)	13, 239, 398, 737
XceI	RCATGY	2 cut(s)	110, 784
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	282
ZrmI	AGTACT	1 cut(s)	854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.