Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003641.1

Orthogroup ID

OG0005592

Physical Location & Seq

Genomic Coordinates Reverse (-)

139020 .. 144196

Gene Structure 5177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003641.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atggctgagagtaccaaagttctgataccagagacattccagggtgggagtagctttgacattgcaggccaaattgggctgatttgggagctaatcaaagcgccattgatagttcctctgctcagagttggagtctatgtctcactagccatggctctcatgctctttgtggagagggtctacatgggtattgtcattgttttggtcaaaatgttctggaaaaagccagagaagcgctacaactatgagcccattcaggaggatttgggattgggtagttccaatttcccaatggtgcttgttcaaatccccatgttcaatgaaagagaggtctacaagatctccattggagctgcatgtgggctgtcgtggccgtccgatcgtcttgtgatccaagtcctggatgattcaactgaccctacaatcaagaaaatggtggaggcagagtgtcagaggtgggcgagaaaaggcataaacatagtgtaccaaatcagagaaactagaggaggatacaaagcaggtgcattgaaagaaggtttgaaacgaagctacgtgaaacactgtgagtacgtggctataatggacgccgatttccgacccgagccagactatctcaggcgagccatccctttcttggttcagaaccccgaaattgctttggttcaagcacgttggagattcggaactgctggtgtgttgagaattgctactattaatgaggcaggtgggtggaaagatcgttcaacagtggaggatatggatcttgctgtccgagctggtctcagaggctggaaatttttgtaccttggtgaccttcagaaagttacattgtggaagaaattctatgtcatctacagtttcttctttgttaggaagatcattgtccacatggtgactttcttcttttactgtgttgtgcttcccctgaccattttggttcctgaagttcgtgttccaatttggggagcagtttatattccttccatcattgccatccttaactcagttggaactccaaggtcagttcaccttttgttttactggatccttttcgagaatgtgatgtccttgcaccggaccaaggcaactttaatcggcctattcggagccgggagagccaatgaatgggttgtcaccgagaaactgggagatgctgccaagaacaaaccagcccccaaattcttcaggaaaccaaagttcaagtttggcaacaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3 Glycos_transf_2

Protein Analysis

405

Amino Acids

46.25

Weight (kDa)

9.65

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22740
fragaria_vesca	FvH4_3g29980 FvH4_3g29980
malus_domestica	MD03G1133700.v1.1 MD11G1156200.v1.1
prunus_persica	Prupe.6G118300_v2.0.a1 Prupe.6G118300_v2.0.a1
pyrus_communis	pycom03g08980 pycom11g12680
rosa_chinensis	RchiOBHm_Chr5g0055361 RchiOBHm_Chr5g0055401 RchiOBHm_Chr5g0055441
rosa_laevigata	RLG00000034986
rosa_multiflora	Rmu_sc0001673.1_g000029 Rmu_sc0003641.1_g000036
rosa_roxburghii	Rroxscaffold_1G00024910 Rroxscaffold_1G00024940
rosa_rugosa	Rorug05G0292800 Rorug05G0292800 Rorug05G0292900
rosa_samantha	Rh5AG362300 Rh5AG362500 Rh5BG374700 Rh5CG396100 Rh5CG396500
rosa_wichuraiana	Rw5G034070 Rw5G034100 Rw5G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	509, 713
Acc36I	ACCTGC	2 cut(s)	509, 713
AccB7I	CCANNNNNTGG	2 cut(s)	400, 1125
AccI	GTMKAC	2 cut(s)	180, 333
AclWI	GGATC	4 cut(s)	385, 768, 1039, 1052
AcoI	YGGCCR	1 cut(s)	371
AcsI	RAATTY	3 cut(s)	794, 839, 1178
AcuI	CTGAAG	3 cut(s)	800, 963, 1168
AcyI	GRCGYC	1 cut(s)	585
AdeI	CACNNNGTG	1 cut(s)	892
AfaI	GTAC	4 cut(s)	13, 485, 569, 803
AfeI	AGCGCT	1 cut(s)	236
AfiI	CCNNNNNNNGG	6 cut(s)	400, 634, 962, 1074, 1081, 1125
AgsI	TTSAA	8 cut(s)	305, 319, 411, 529, 541, 665, 744, 1201
AjnI	CCWGG	2 cut(s)	39, 399
AloI	GAACNNNNNNTCC	2 cut(s)	724, 756
AluBI	AGCT	5 cut(s)	54, 91, 353, 549, 776
AluI	AGCT	5 cut(s)	54, 91, 353, 549, 776
Alw26I	GTCTC	3 cut(s)	26, 145, 785
AlwI	GGATC	4 cut(s)	385, 768, 1039, 1052
AlwNI	CAGNNNCTG	1 cut(s)	789
Ama87I	CYCGRG	1 cut(s)	599
Aor51HI	AGCGCT	1 cut(s)	236
AoxI	GGCC	3 cut(s)	67, 371, 1096
ApeKI	GCWGC	2 cut(s)	353, 1154
ApoI	RAATTY	3 cut(s)	794, 839, 1178
AseI	ATTAAT	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	839
AspLEI	GCGC	2 cut(s)	103, 237
AspS9I	GGNCC	1 cut(s)	1077
AsuC2I	CCSGG	1 cut(s)	1111
AsuHPI	GGTGA	4 cut(s)	821, 904, 1019, 1126
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	1077
BamHI	GGATCC	1 cut(s)	1044
BanII	GRGCYC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	340, 1141
BccI	CCATC	3 cut(s)	632, 992, 1001
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	2 cut(s)	41, 401
BciVI	GTATCC	1 cut(s)	503
BcnI	CCSGG	1 cut(s)	1111
BcoDI	GTCTC	3 cut(s)	26, 145, 785
BfaI	CTAG	2 cut(s)	146, 501
BfmI	CTRYAG	1 cut(s)	853
BfoI	RGCGCY	2 cut(s)	104, 238
BfuAI	ACCTGC	2 cut(s)	509, 713
BfuI	GTATCC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	2 cut(s)	354, 1155
BlsI	GCNGC	2 cut(s)	355, 1156
Bme1390I	CCNGG	3 cut(s)	41, 401, 1111
Bme18I	GGWCC	1 cut(s)	1077
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	1077
BmiI	GGNNCC	3 cut(s)	939, 1046, 1108
BmrFI	CCNGG	3 cut(s)	41, 401, 1111
BmrI	ACTGGG	1 cut(s)	1154
BmsI	GCATC	1 cut(s)	1141
BmuI	ACTGGG	1 cut(s)	1154
BplI	GAGNNNNNCTC	2 cut(s)	765, 797
BpuMI	CCSGG	1 cut(s)	1111
BsaAI	YACGTR	2 cut(s)	553, 571
BsaBI	GATNNNNATC	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	785
BsaJI	CCNNGG	5 cut(s)	40, 150, 805, 1016, 1080
BsaWI	WCCGGW	1 cut(s)	1074
BsaXI	ACNNNNNCTCC	6 cut(s)	123, 153, 326, 356, 431, 461
Bsc4I	CCNNNNNNNGG	6 cut(s)	400, 634, 962, 1074, 1081, 1125
Bse1I	ACTGG	2 cut(s)	1046, 1149
Bse3DI	GCAATG	2 cut(s)	60, 987
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	2 cut(s)	41, 401
BseDI	CCNNGG	5 cut(s)	40, 150, 805, 1016, 1080
BseGI	GGATG	3 cut(s)	409, 624, 993
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	6 cut(s)	400, 634, 962, 1074, 1081, 1125
BseMI	GCAATG	2 cut(s)	60, 987
BseMII	CTCAG	4 cut(s)	136, 628, 796, 1017
BseNI	ACTGG	2 cut(s)	1046, 1149
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	2 cut(s)	340, 1141
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	3 cut(s)	69, 373, 1098
BsiEI	CGRYCG	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	2 cut(s)	1075, 1110
BslI	CCNNNNNNNGG	6 cut(s)	400, 634, 962, 1074, 1081, 1125
BsmAI	GTCTC	3 cut(s)	26, 145, 785
BsnI	GGCC	3 cut(s)	69, 373, 1098
Bso31I	GGTCTC	1 cut(s)	785
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
Bsp19I	CCATGG	1 cut(s)	150
BspANI	GGCC	3 cut(s)	69, 373, 1098
BspCNI	CTCAG	4 cut(s)	135, 627, 795, 1016
BspLI	GGNNCC	3 cut(s)	939, 1046, 1108
BspMI	ACCTGC	2 cut(s)	509, 713
BspPI	GGATC	4 cut(s)	385, 768, 1039, 1052
BspTNI	GGTCTC	1 cut(s)	785
BsrDI	GCAATG	2 cut(s)	60, 987
BsrI	ACTGG	2 cut(s)	1046, 1149
BssECI	CCNNGG	5 cut(s)	40, 150, 805, 1016, 1080
BssMI	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
BssNI	GRCGYC	1 cut(s)	585
BssT1I	CCWWGG	4 cut(s)	150, 805, 1016, 1080
Bst2UI	CCWGG	2 cut(s)	41, 401
Bst4CI	ACNGT	4 cut(s)	563, 748, 857, 911
BstACI	GRCGYC	1 cut(s)	585
BstBAI	YACGTR	2 cut(s)	553, 571
BstC8I	GCNNGC	2 cut(s)	67, 621
BstDEI	CTNAG	5 cut(s)	6, 122, 614, 782, 1003
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	809
BstF5I	GGATG	3 cut(s)	409, 624, 993
BstH2I	RGCGCY	2 cut(s)	104, 238
BstHHI	GCGC	2 cut(s)	103, 237
BstKTI	GATC	7 cut(s)	342, 382, 393, 739, 763, 879, 1047
BstMAI	GTCTC	3 cut(s)	26, 145, 785
BstMBI	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 370, 773, 1115
BstNI	CCWGG	2 cut(s)	41, 401
BstNSI	RCATGY	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	809
BstSCI	CCNGG	3 cut(s)	39, 399, 1109
BstSFI	CTRYAG	1 cut(s)	853
BstV1I	GCAGC	2 cut(s)	340, 1141
BstX2I	RGATCY	3 cut(s)	339, 760, 1044
BstYI	RGATCY	3 cut(s)	339, 760, 1044
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	3 cut(s)	69, 373, 1098
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	409, 624, 993
BtsIMutI	CAGTG	2 cut(s)	559, 753
BveI	ACCTGC	2 cut(s)	509, 713
Cac8I	GCNNGC	2 cut(s)	67, 621
CaiI	CAGNNNCTG	1 cut(s)	789
CfoI	GCGC	2 cut(s)	103, 237
Cfr13I	GGNCC	1 cut(s)	1077
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	4 cut(s)	12, 484, 568, 802
CviAII	CATG	6 cut(s)	151, 160, 184, 313, 357, 889
CviQI	GTAC	4 cut(s)	12, 484, 568, 802
DdeI	CTNAG	5 cut(s)	6, 122, 614, 782, 1003
DpnI	GATC	7 cut(s)	341, 381, 392, 738, 762, 878, 1046
DpnII	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
DraIII	CACNNNGTG	1 cut(s)	892
EaeI	YGGCCR	1 cut(s)	371
Eco130I	CCWWGG	4 cut(s)	150, 805, 1016, 1080
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	785
Eco47I	GGWCC	1 cut(s)	1077
Eco47III	AGCGCT	1 cut(s)	236
Eco57I	CTGAAG	3 cut(s)	800, 963, 1168
Eco88I	CYCGRG	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	809
EcoO65I	GGTNACC	1 cut(s)	809
EcoRII	CCWGG	2 cut(s)	39, 399
EcoT14I	CCWWGG	4 cut(s)	150, 805, 1016, 1080
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	4 cut(s)	150, 805, 1016, 1080
FaeI	CATG	6 cut(s)	154, 163, 187, 316, 360, 892
FatI	CATG	6 cut(s)	150, 159, 183, 312, 356, 888
FblI	GTMKAC	2 cut(s)	180, 333
Fnu4HI	GCNGC	2 cut(s)	354, 1155
FokI	GGATG	3 cut(s)	416, 611, 980
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	354, 1155
FspBI	CTAG	2 cut(s)	146, 501
GlaI	GCGC	2 cut(s)	102, 236
GluI	GCNGC	2 cut(s)	354, 1155
HaeII	RGCGCY	2 cut(s)	104, 238
HaeIII	GGCC	3 cut(s)	69, 373, 1098
HapII	CCGG	2 cut(s)	1075, 1110
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	103, 237
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	6 cut(s)	154, 163, 187, 316, 360, 892
Hin6I	GCGC	2 cut(s)	101, 235
HinP1I	GCGC	2 cut(s)	101, 235
HinfI	GANTC	3 cut(s)	132, 407, 678
HpaII	CCGG	2 cut(s)	1075, 1110
HphI	GGTGA	4 cut(s)	821, 904, 1019, 1126
Hpy166II	GTNNAC	5 cut(s)	181, 334, 484, 886, 1027
Hpy188III	TCNNGA	6 cut(s)	217, 257, 427, 941, 1054, 1186
Hpy8I	GTNNAC	5 cut(s)	181, 334, 484, 886, 1027
HpyAV	CCTTC	3 cut(s)	527, 824, 990
HpyCH4III	ACNGT	4 cut(s)	563, 748, 857, 911
HpyCH4IV	ACGT	3 cut(s)	552, 570, 670
HpyCH4V	TGCA	4 cut(s)	65, 356, 524, 1072
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 370, 773, 1115
HpyF3I	CTNAG	5 cut(s)	6, 122, 614, 782, 1003
HpySE526I	ACGT	3 cut(s)	552, 570, 670
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	6 cut(s)	154, 163, 187, 316, 360, 892
HspAI	GCGC	2 cut(s)	101, 235
Kzo9I	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
LmnI	GCTCC	4 cut(s)	88, 350, 965, 1106
Lsp1109I	GCAGC	2 cut(s)	340, 1141
LweI	GCATC	1 cut(s)	1141
MaeI	CTAG	2 cut(s)	146, 501
MaeII	ACGT	3 cut(s)	552, 570, 670
MaeIII	GTNAC	4 cut(s)	809, 823, 892, 1132
MalI	GATC	7 cut(s)	341, 381, 392, 738, 762, 878, 1046
MboI	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
MboII	GAAGA	5 cut(s)	847, 853, 886, 892, 1174
MflI	RGATCY	3 cut(s)	339, 760, 1044
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	8 cut(s)	72, 283, 651, 702, 794, 839, 957, 1178
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	4 cut(s)	109, 619, 653, 988
MroXI	GAANNNNTTC	1 cut(s)	839
MseI	TTAA	3 cut(s)	714, 999, 1091
MspI	CCGG	2 cut(s)	1075, 1110
MspR9I	CCNGG	3 cut(s)	41, 401, 1111
MvaI	CCWGG	2 cut(s)	41, 401
MwoI	GCNNNNNNNGC	4 cut(s)	232, 370, 773, 1115
NciI	CCSGG	1 cut(s)	1111
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
NlaIII	CATG	6 cut(s)	154, 163, 187, 316, 360, 892
NlaIV	GGNNCC	3 cut(s)	939, 1046, 1108
NmuCI	GTSAC	3 cut(s)	809, 892, 1132
NspI	RCATGY	1 cut(s)	360
PaqCI	CACCTGC	2 cut(s)	509, 713
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	2 cut(s)	407, 678
PflMI	CCANNNNNTGG	2 cut(s)	400, 1125
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	355, 1156
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	2 cut(s)	553, 571
PshBI	ATTAAT	1 cut(s)	714
Psp6I	CCWGG	2 cut(s)	39, 399
PspEI	GGTNACC	1 cut(s)	809
PspGI	CCWGG	2 cut(s)	39, 399
PspN4I	GGNNCC	3 cut(s)	939, 1046, 1108
PspPI	GGNCC	1 cut(s)	1077
PstNI	CAGNNNCTG	1 cut(s)	789
PsuI	RGATCY	3 cut(s)	339, 760, 1044
PvuI	CGATCG	1 cut(s)	382
RsaI	GTAC	4 cut(s)	13, 485, 569, 803
RsaNI	GTAC	4 cut(s)	12, 484, 568, 802
SaqAI	TTAA	3 cut(s)	714, 999, 1091
SatI	GCNGC	2 cut(s)	354, 1155
Sau3AI	GATC	7 cut(s)	339, 379, 390, 736, 760, 876, 1044
Sau96I	GGNCC	1 cut(s)	1077
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	3 cut(s)	41, 401, 1111
SduI	GDGCHC	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	1141
SfcI	CTRYAG	1 cut(s)	853
SinI	GGWCC	1 cut(s)	1077
Sse9I	AATT	8 cut(s)	72, 283, 651, 702, 794, 839, 957, 1178
SspMI	CTAG	2 cut(s)	146, 501
StyD4I	CCNGG	3 cut(s)	39, 399, 1109
StyI	CCWWGG	4 cut(s)	150, 805, 1016, 1080
TaaI	ACNGT	4 cut(s)	563, 748, 857, 911
TaiI	ACGT	3 cut(s)	555, 573, 673
TaqI	TCGA	1 cut(s)	1053
TasI	AATT	8 cut(s)	72, 283, 651, 702, 794, 839, 957, 1178
TfiI	GAWTC	2 cut(s)	407, 678
Tru1I	TTAA	3 cut(s)	714, 999, 1091
Tru9I	TTAA	3 cut(s)	714, 999, 1091
TscAI	CASTG	2 cut(s)	566, 753
TseFI	GTSAC	3 cut(s)	809, 892, 1132
TseI	GCWGC	2 cut(s)	353, 1154
Tsp45I	GTSAC	3 cut(s)	809, 892, 1132
TspDTI	ATGAA	2 cut(s)	336, 1137
TspRI	CASTG	2 cut(s)	566, 753
Van91I	CCANNNNNTGG	2 cut(s)	400, 1125
VpaK11BI	GGWCC	1 cut(s)	1077
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	3 cut(s)	794, 839, 1178
XceI	RCATGY	1 cut(s)	360
XcmI	CCANNNNNNNNNTGG	2 cut(s)	289, 631
XmiI	GTMKAC	2 cut(s)	180, 333
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	2 cut(s)	146, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.