Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005592

Physical Location & Seq

Genomic Coordinates Reverse (-)

59109293 .. 59115336

Gene Structure 6044 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG374700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCTGAGAGTACCAAAGTTCTGATACCAGAGACATTCCAGGGTGGGAGTAGCTTTGACATTGCAGGCCAAATTGGGCTGATTTGGGAGCTAATCAAAGCGCCATTGATAGTTCCTCTGCTCAGAGTTGGAGTCTATGTCTCACTAGCCATGGCTCTCATGCTCTTTGTGGAGAGGGTCTACATGGGTATTGTCATTGTTTTGGTCAAAATGTTCTGGAAAAAGCCAGAGAAGCGCTACAACTATGAGCCCATTCAGGAGGATTTGGAATTGGGCAGTTCCAATTTTCCAGTTGTGCTTGTTCAAATCCCCATGTTCAATGAAAGAGAGGTCTACAAGATCTCCATTGGAGCTGCATGTGGGCTGTCGTGGCCGTCCGATCGTCTTGTGATCCAAGTCCTGGATGATTCAACTGACCCTACAATCAAGAAAATGGTGGAGGCAGAGTGTCAGAGGTGGGCGAGCAAAGGCATAAATATAGTGTACCAAATCAGAGAAACTAGAGGAGGATACAAAGCAGGGGCATTGAAGGAAGGTCTTAAACGTAGCTACGTGAAACACTGCGAGTACGTGGCCATAATGGACGCCGATTTCCGACCCGAGCCTGACTATCTCAGGCGAGCCATCCCTTTCTTGGTTCAGAACCCCGAAATCGCTCTGGTTCAAGCTCGTTGGAGATTCGTGAACGCGGACGAGTGCTTGCTGACAAGAATGCAAGAGATGTCATTGGATTACCATTTCACAGTTGAACAAGAAGTTGGTTCAGCAACACATGCCTTCTTTGGCTTCAACGGAACTGCTGGTGTGTGGAGAATTGCTGCCATTAATGAGGCAGGTGGGTGGAAAGATCGTACAACAGTGGAGGATATGGATCTTGCTGTCCGAGCTGGTCTCAGAGGCTGGAAATTTTTGTACCTTGGTGACCTTCAGGTGAAAAGTGAACTTCCTAGTACCTTCAATGCCTTCCGTTACCAGCAGCACCGATGGTCTTGTGGTCCAGCTAATCTGTTTAGGAAAATGGTCATGGAAATTGCAATGAATAAGAAAGTTACATTGTGGAAGAAATTCTATGTCATCTACAGCTTCTTCTTTGTTAGGAAGATCATTGCCCACATGGTGACTTTCTTCTTTTACTGTGTTGTGCTTCCCCTGACCATTTTGGTTCCTGAAGTTCATGTTCCAATTTGGGGAGCAGTTTATATTCCTTCCATCATTACCATCCTTAACTCAGTTGGAACTCCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_tranf_2_3 Glyco_trans_2_3 Glycos_transf_2

Protein Analysis

415

Amino Acids

47.5

Weight (kDa)

8.84

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_tranf_2_3	PF13641	98 - 332	1.1e-15	Glycosyltransferase like family 2
Glycos_transf_2	PF00535	102 - 259	2.5e-11	Glycosyl transferase family 2
Glyco_trans_2_3	PF13632	190 - 389	1.6e-23	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22740
fragaria_vesca	FvH4_3g29980 FvH4_3g29980
malus_domestica	MD03G1133700.v1.1 MD11G1156200.v1.1
prunus_persica	Prupe.6G118300_v2.0.a1 Prupe.6G118300_v2.0.a1
pyrus_communis	pycom03g08980 pycom11g12680
rosa_chinensis	RchiOBHm_Chr5g0055361 RchiOBHm_Chr5g0055401 RchiOBHm_Chr5g0055441
rosa_laevigata	RLG00000034986
rosa_multiflora	Rmu_sc0001673.1_g000029 Rmu_sc0003641.1_g000036
rosa_roxburghii	Rroxscaffold_1G00024910 Rroxscaffold_1G00024940
rosa_rugosa	Rorug05G0292800 Rorug05G0292800 Rorug05G0292900
rosa_samantha	Rh5AG362300 Rh5AG362500 Rh5BG374700 Rh5CG396100 Rh5CG396500
rosa_wichuraiana	Rw5G034070 Rw5G034100 Rw5G034130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccI	GTMKAC	2 cut(s)	180, 333
AccII	CGCG	1 cut(s)	689
AciI	CCGC	1 cut(s)	689
AclWI	GGATC	2 cut(s)	385, 879
AcoI	YGGCCR	2 cut(s)	371, 573
AcsI	RAATTY	2 cut(s)	905, 1064
AcuI	CTGAAG	2 cut(s)	911, 1188
AcyI	GRCGYC	1 cut(s)	585
AdeI	CACNNNGTG	1 cut(s)	1117
AfaI	GTAC	6 cut(s)	13, 485, 569, 853, 914, 952
AfeI	AGCGCT	1 cut(s)	236
AfiI	CCNNNNNNNGG	3 cut(s)	400, 634, 1187
AgsI	TTSAA	8 cut(s)	305, 319, 411, 529, 665, 749, 790, 958
AjnI	CCWGG	2 cut(s)	39, 399
AjuI	GAANNNNNNNTTGG	2 cut(s)	741, 773
AluBI	AGCT	8 cut(s)	54, 91, 353, 549, 668, 887, 1001, 1083
AluI	AGCT	8 cut(s)	54, 91, 353, 549, 668, 887, 1001, 1083
Alw26I	GTCTC	3 cut(s)	26, 145, 896
AlwI	GGATC	2 cut(s)	385, 879
AlwNI	CAGNNNCTG	1 cut(s)	900
Ama87I	CYCGRG	1 cut(s)	599
Aor51HI	AGCGCT	1 cut(s)	236
AoxI	GGCC	3 cut(s)	67, 371, 573
ApeKI	GCWGC	3 cut(s)	353, 818, 976
ApoI	RAATTY	2 cut(s)	905, 1064
AseI	ATTAAT	1 cut(s)	825
Asp700I	GAANNNNTTC	1 cut(s)	1064
AspLEI	GCGC	2 cut(s)	103, 237
AspS9I	GGNCC	1 cut(s)	995
AsuHPI	GGTGA	3 cut(s)	932, 943, 1129
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	1 cut(s)	995
BalI	TGGCCA	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	252
BbvI	GCAGC	3 cut(s)	340, 805, 988
BccI	CCATC	4 cut(s)	632, 978, 1217, 1226
BceAI	ACGGC	1 cut(s)	358
BciT130I	CCWGG	2 cut(s)	41, 401
BciVI	GTATCC	1 cut(s)	503
BcoDI	GTCTC	3 cut(s)	26, 145, 896
BfaI	CTAG	3 cut(s)	146, 501, 948
BfmI	CTRYAG	1 cut(s)	1078
BfoI	RGCGCY	2 cut(s)	104, 238
BfuAI	ACCTGC	1 cut(s)	824
BfuI	GTATCC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	339
BisI	GCNGC	3 cut(s)	354, 819, 977
BlsI	GCNGC	3 cut(s)	355, 820, 978
Bme1390I	CCNGG	2 cut(s)	41, 401
Bme18I	GGWCC	1 cut(s)	995
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	1 cut(s)	995
BmiI	GGNNCC	1 cut(s)	1164
BmrFI	CCNGG	2 cut(s)	41, 401
BplI	GAGNNNNNCTC	2 cut(s)	876, 908
BsaAI	YACGTR	2 cut(s)	553, 571
BsaBI	GATNNNNATC	1 cut(s)	870
BsaHI	GRCGYC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	896
BsaJI	CCNNGG	4 cut(s)	40, 150, 916, 1241
BsaXI	ACNNNNNCTCC	6 cut(s)	123, 153, 326, 356, 431, 461
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 634, 1187
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	3 cut(s)	60, 1041, 1104
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	2 cut(s)	41, 401
BseDI	CCNNGG	4 cut(s)	40, 150, 916, 1241
BseGI	GGATG	3 cut(s)	409, 624, 1218
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	3 cut(s)	400, 634, 1187
BseMI	GCAATG	3 cut(s)	60, 1041, 1104
BseMII	CTCAG	4 cut(s)	136, 628, 907, 1242
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	519
BseXI	GCAGC	3 cut(s)	340, 805, 988
Bsh1236I	CGCG	1 cut(s)	689
Bsh1285I	CGRYCG	1 cut(s)	382
BshFI	GGCC	3 cut(s)	69, 373, 575
BsiEI	CGRYCG	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	599
BslI	CCNNNNNNNGG	3 cut(s)	400, 634, 1187
BsmAI	GTCTC	3 cut(s)	26, 145, 896
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	3 cut(s)	69, 373, 575
Bso31I	GGTCTC	1 cut(s)	896
BsoBI	CYCGRG	1 cut(s)	599
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	1 cut(s)	689
BspANI	GGCC	3 cut(s)	69, 373, 575
BspCNI	CTCAG	4 cut(s)	135, 627, 906, 1241
BspFNI	CGCG	1 cut(s)	689
BspLI	GGNNCC	1 cut(s)	1164
BspMI	ACCTGC	1 cut(s)	824
BspPI	GGATC	2 cut(s)	385, 879
BspTNI	GGTCTC	1 cut(s)	896
BsrDI	GCAATG	3 cut(s)	60, 1041, 1104
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	4 cut(s)	40, 150, 916, 1241
BssMI	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
BssNI	GRCGYC	1 cut(s)	585
BssT1I	CCWWGG	3 cut(s)	150, 916, 1241
Bst2UI	CCWGG	2 cut(s)	41, 401
Bst4CI	ACNGT	3 cut(s)	745, 859, 1136
BstACI	GRCGYC	1 cut(s)	585
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBAI	YACGTR	2 cut(s)	553, 571
BstC8I	GCNNGC	4 cut(s)	67, 463, 621, 701
BstDEI	CTNAG	5 cut(s)	6, 122, 614, 893, 1228
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	920
BstF5I	GGATG	3 cut(s)	409, 624, 1218
BstFNI	CGCG	1 cut(s)	689
BstH2I	RGCGCY	2 cut(s)	104, 238
BstHHI	GCGC	2 cut(s)	103, 237
BstKTI	GATC	6 cut(s)	342, 382, 393, 850, 874, 1104
BstMAI	GTCTC	3 cut(s)	26, 145, 896
BstMBI	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
BstMCI	CGRYCG	1 cut(s)	382
BstMWI	GCNNNNNNNGC	4 cut(s)	232, 370, 773, 884
BstNI	CCWGG	2 cut(s)	41, 401
BstNSI	RCATGY	2 cut(s)	360, 776
BstPI	GGTNACC	1 cut(s)	920
BstSCI	CCNGG	2 cut(s)	39, 399
BstSFI	CTRYAG	1 cut(s)	1078
BstUI	CGCG	1 cut(s)	689
BstV1I	GCAGC	3 cut(s)	340, 805, 988
BstX2I	RGATCY	2 cut(s)	339, 871
BstYI	RGATCY	2 cut(s)	339, 871
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	3 cut(s)	69, 373, 575
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	3 cut(s)	409, 624, 1218
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	2 cut(s)	559, 864
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	4 cut(s)	67, 463, 621, 701
CaiI	CAGNNNCTG	1 cut(s)	900
CfoI	GCGC	2 cut(s)	103, 237
Cfr13I	GGNCC	1 cut(s)	995
CseI	GACGC	1 cut(s)	593
Csp6I	GTAC	6 cut(s)	12, 484, 568, 852, 913, 951
CviAII	CATG	9 cut(s)	151, 160, 184, 313, 357, 773, 1024, 1114, 1175
CviQI	GTAC	6 cut(s)	12, 484, 568, 852, 913, 951
DdeI	CTNAG	5 cut(s)	6, 122, 614, 893, 1228
DpnI	GATC	6 cut(s)	341, 381, 392, 849, 873, 1103
DpnII	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
DraIII	CACNNNGTG	1 cut(s)	1117
EaeI	YGGCCR	2 cut(s)	371, 573
Eco130I	CCWWGG	3 cut(s)	150, 916, 1241
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	896
Eco47I	GGWCC	1 cut(s)	995
Eco47III	AGCGCT	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	911, 1188
Eco88I	CYCGRG	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	920
EcoO65I	GGTNACC	1 cut(s)	920
EcoRII	CCWGG	2 cut(s)	39, 399
EcoT14I	CCWWGG	3 cut(s)	150, 916, 1241
EcoT38I	GRGCYC	1 cut(s)	252
ErhI	CCWWGG	3 cut(s)	150, 916, 1241
FaeI	CATG	9 cut(s)	154, 163, 187, 316, 360, 776, 1027, 1117, 1178
FatI	CATG	9 cut(s)	150, 159, 183, 312, 356, 772, 1023, 1113, 1174
FblI	GTMKAC	2 cut(s)	180, 333
Fnu4HI	GCNGC	3 cut(s)	354, 819, 977
FokI	GGATG	3 cut(s)	416, 611, 1205
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	3 cut(s)	354, 819, 977
FspBI	CTAG	3 cut(s)	146, 501, 948
GlaI	GCGC	2 cut(s)	102, 236
GluI	GCNGC	3 cut(s)	354, 819, 977
HaeII	RGCGCY	2 cut(s)	104, 238
HaeIII	GGCC	3 cut(s)	69, 373, 575
HgaI	GACGC	1 cut(s)	593
HhaI	GCGC	2 cut(s)	103, 237
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	9 cut(s)	154, 163, 187, 316, 360, 776, 1027, 1117, 1178
Hin6I	GCGC	2 cut(s)	101, 235
HinP1I	GCGC	2 cut(s)	101, 235
HinfI	GANTC	3 cut(s)	132, 407, 678
HphI	GGTGA	3 cut(s)	932, 943, 1129
Hpy166II	GTNNAC	5 cut(s)	181, 334, 484, 685, 941
Hpy188I	TCNGA	9 cut(s)	24, 125, 379, 453, 494, 596, 642, 884, 896
Hpy188III	TCNNGA	5 cut(s)	217, 257, 427, 682, 1166
Hpy8I	GTNNAC	5 cut(s)	181, 334, 484, 685, 941
HpyAV	CCTTC	7 cut(s)	523, 527, 787, 935, 964, 973, 1215
HpyCH4III	ACNGT	3 cut(s)	745, 859, 1136
HpyCH4IV	ACGT	3 cut(s)	544, 552, 570
HpyCH4V	TGCA	4 cut(s)	65, 356, 715, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	232, 370, 773, 884
HpyF3I	CTNAG	5 cut(s)	6, 122, 614, 893, 1228
HpySE526I	ACGT	3 cut(s)	544, 552, 570
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	9 cut(s)	154, 163, 187, 316, 360, 776, 1027, 1117, 1178
HspAI	GCGC	2 cut(s)	101, 235
Kzo9I	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
LmnI	GCTCC	3 cut(s)	88, 350, 1190
Lsp1109I	GCAGC	3 cut(s)	340, 805, 988
MaeI	CTAG	3 cut(s)	146, 501, 948
MaeII	ACGT	3 cut(s)	544, 552, 570
MaeIII	GTNAC	4 cut(s)	920, 968, 1048, 1117
MalI	GATC	6 cut(s)	341, 381, 392, 849, 873, 1103
MboI	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
MboII	GAAGA	4 cut(s)	1072, 1078, 1111, 1117
MflI	RGATCY	2 cut(s)	339, 871
MhlI	GDGCHC	1 cut(s)	252
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	8 cut(s)	72, 269, 283, 813, 905, 1029, 1064, 1182
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	1 cut(s)	141
MmeI	TCCRAC	4 cut(s)	109, 619, 653, 1213
Mox20I	TGGCCA	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	1064
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	3 cut(s)	540, 825, 1224
Msp20I	TGGCCA	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	41, 401
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	2 cut(s)	41, 401
MvnI	CGCG	1 cut(s)	689
MwoI	GCNNNNNNNGC	4 cut(s)	232, 370, 773, 884
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
NlaIII	CATG	9 cut(s)	154, 163, 187, 316, 360, 776, 1027, 1117, 1178
NlaIV	GGNNCC	1 cut(s)	1164
NmuCI	GTSAC	2 cut(s)	920, 1117
NspI	RCATGY	2 cut(s)	360, 776
PaqCI	CACCTGC	1 cut(s)	824
PctI	GAATGC	1 cut(s)	717
PdmI	GAANNNNTTC	1 cut(s)	1064
PfeI	GAWTC	2 cut(s)	407, 678
PflMI	CCANNNNNTGG	1 cut(s)	400
PfoI	TCCNGGA	1 cut(s)	399
PkrI	GCNGC	3 cut(s)	355, 820, 978
Ple19I	CGATCG	1 cut(s)	382
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	2 cut(s)	553, 571
PshBI	ATTAAT	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	39, 399
PspEI	GGTNACC	1 cut(s)	920
PspGI	CCWGG	2 cut(s)	39, 399
PspN4I	GGNNCC	1 cut(s)	1164
PspPI	GGNCC	1 cut(s)	995
PstNI	CAGNNNCTG	1 cut(s)	900
PsuI	RGATCY	2 cut(s)	339, 871
PvuI	CGATCG	1 cut(s)	382
RsaI	GTAC	6 cut(s)	13, 485, 569, 853, 914, 952
RsaNI	GTAC	6 cut(s)	12, 484, 568, 852, 913, 951
SaqAI	TTAA	3 cut(s)	540, 825, 1224
SatI	GCNGC	3 cut(s)	354, 819, 977
Sau3AI	GATC	6 cut(s)	339, 379, 390, 847, 871, 1101
Sau96I	GGNCC	1 cut(s)	995
SchI	GAGTC	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	41, 401
SduI	GDGCHC	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	1078
SinI	GGWCC	1 cut(s)	995
Sse9I	AATT	8 cut(s)	72, 269, 283, 813, 905, 1029, 1064, 1182
SsiI	CCGC	1 cut(s)	689
SspMI	CTAG	3 cut(s)	146, 501, 948
StyD4I	CCNGG	2 cut(s)	39, 399
StyI	CCWWGG	3 cut(s)	150, 916, 1241
TaaI	ACNGT	3 cut(s)	745, 859, 1136
TaiI	ACGT	3 cut(s)	547, 555, 573
TasI	AATT	8 cut(s)	72, 269, 283, 813, 905, 1029, 1064, 1182
TfiI	GAWTC	2 cut(s)	407, 678
Tru1I	TTAA	3 cut(s)	540, 825, 1224
Tru9I	TTAA	3 cut(s)	540, 825, 1224
TscAI	CASTG	2 cut(s)	566, 864
TseFI	GTSAC	2 cut(s)	920, 1117
TseI	GCWGC	3 cut(s)	353, 818, 976
Tsp45I	GTSAC	2 cut(s)	920, 1117
TspDTI	ATGAA	3 cut(s)	336, 1052, 1163
TspGWI	ACGGA	2 cut(s)	807, 956
TspRI	CASTG	2 cut(s)	566, 864
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	995
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	2 cut(s)	905, 1064
XceI	RCATGY	2 cut(s)	360, 776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XmiI	GTMKAC	2 cut(s)	180, 333
XmnI	GAANNNNTTC	1 cut(s)	1064
XspI	CTAG	3 cut(s)	146, 501, 948

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.