RchiOBHm_Chr6g0252121

Belongs to the peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
7303359 .. 7304679
1321 bp
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UTR
Exon/CDS
Intron
PRQ22603

Sequence Viewer

Length: 294 bp
ATGCTGAGTTCCGCCCTGCCCAAAATGGGTGATTTGCTGATGGAGATGAGGATGATTGGTGACCTGTGCTGTCTAGTCTCCATCGATGAGGAGGCATTTTTCAGAGATTATGCTGAATCACATAAGAAACTCTCTGAGCTTGGGTTTACTACAAGTTCCTCCAAGATTGTTGCAAAGGGTAGCACCATACTGGCACAAGGTGCAGTTGGAGTTGCAATTTGTGCTGCTGTTGTGATCCTGGGCTACTTCTATGAAGTTCGCAAAAGATTGCTTTCCATCCTAATGAATAAGTGA

Protein Analysis

97

Amino Acids

10.6

Weight (kDa)

7.7

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019948)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 12
AclWI GGATC 1 cut(s) 229
AdeI CACNNNGTG 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 26
AjnI CCWGG 1 cut(s) 237
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 41, 71
BbvI GCAGC 1 cut(s) 211
BccI CCATC 3 cut(s) 34, 89, 284
BciT130I CCWGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 239
BmrFI CCNGG 1 cut(s) 239
Bsa29I ATCGAT 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 2 cut(s) 57, 276
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 211
BsgI GTGCAG 1 cut(s) 222
BshVI ATCGAT 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 82
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 1 cut(s) 12
BspCNI CTCAG 1 cut(s) 127
BspDI ATCGAT 1 cut(s) 84
BspPI GGATC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 239
BstAPI GCANNNNNTGC 2 cut(s) 200, 221
BstDEI CTNAG 2 cut(s) 5, 135
BstEII GGTNACC 1 cut(s) 59
BstF5I GGATG 2 cut(s) 57, 276
BstKTI GATC 1 cut(s) 237
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 2 cut(s) 200, 221
BstNI CCWGG 1 cut(s) 239
BstPI GGTNACC 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 84
BtsCI GGATG 2 cut(s) 57, 276
ClaI ATCGAT 1 cut(s) 84
CviJI RGCY 2 cut(s) 139, 243
CviKI_1 RGCY 2 cut(s) 139, 243
DdeI CTNAG 2 cut(s) 5, 135
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DraIII CACNNNGTG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 59
EcoO65I GGTNACC 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 237
FaiI YATR 4 cut(s) 111, 123, 188, 252
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 2 cut(s) 64, 263
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 74
GluI GCNGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 116
HphI GGTGA 2 cut(s) 41, 71
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 104, 136
Hpy8I GTNNAC 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 173, 203, 215
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 221
HpyF3I CTNAG 2 cut(s) 5, 135
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 5 cut(s) 29, 77, 176, 224, 251
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 59
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MluCI AATT 1 cut(s) 216
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 4 cut(s) 42, 82, 85, 169
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 2 cut(s) 200, 221
NdeII GATC 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 59
PfeI GAWTC 1 cut(s) 116
PkrI GCNGC 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 237
PspEI GGTNACC 1 cut(s) 59
PspGI CCWGG 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 281
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 234
ScrFI CCNGG 1 cut(s) 239
SetI ASST 3 cut(s) 66, 141, 202
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 12
SspMI CTAG 1 cut(s) 74
StyD4I CCNGG 1 cut(s) 237
TaqI TCGA 1 cut(s) 84
TasI AATT 1 cut(s) 216
TfiI GAWTC 1 cut(s) 116
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 267
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.