Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0019948

Physical Location & Seq

Genomic Coordinates Reverse (-)

108468 .. 112194

Gene Structure 3727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTTTTGTGAGGTTTTACTTCCCGGACGGCTTTGCCGCAGAGAGCTAAACCGCAGAGGCGGCTCTGTTGTAAAAGAGATCGGAACAGAGCTTAAAAATGGCAAACTGATGTGGGTTCCAATCAGACCCCGCCACCTTGCTGATGTTGTTGCTGTTGAGGTCACCATTGATTTTACTCCTGGCAGGAAGGATTCAAAAATTTCCCCCAAGGAAGGACAACTTCCAGATGCTAAAAAAGGTTTGGACATCTTCTATCGAATGGGGTTATCTGACAAGGATATTGTTGCACTCTCTCGGGCGCTGACCACCTGCTCATTCTGTGTTAATCTTTTATGGTCTGGTTTTGATGGTCCTTGGACTCAGGAACCCCTGAAGTTTGATAACTCAATACTTCATGTAAGACTTAAACTTGAAGGTGAAAATTTCATAATTTCATATTATTTTGCATGCATAGAATTGCTGAAAGGGGAATCAGAGGGATTGCTGAAACTCTCATCAGATACAGCTCTGTTAGATGATGCTGAGTTCCGTAAATATGTTGAGCTATATGCAAAGGATGAGGAGGCATTTTTCAGAGATTATGCAGAATCACATAAGAAACTCTCTGAGCTTGGGTTTACTACAAGTTCCTCCAAGATTGTTGCAAGGGGTAGCACCATACTGGCACAAGGTGCAGTTGGAGTTGCAATTTGTGCTGCTGTTGTGATCCTGGGCTACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

240

Amino Acids

26.75

Weight (kDa)

6.84

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	55 - 186	2.6e-09	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0019948)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251981 RchiOBHm_Chr6g0252121 RchiOBHm_Chr6g0252131
rosa_multiflora	Rmu_sc0002522.1_g000007
rosa_samantha	Rh6AG019500 Rh6BG015000
rosa_wichuraiana	Rw6G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	1 cut(s)	317
AciI	CCGC	4 cut(s)	37, 52, 60, 130
AclWI	GGATC	1 cut(s)	700
AcsI	RAATTY	2 cut(s)	198, 421
AcuI	CTGAAG	1 cut(s)	392
AdeI	CACNNNGTG	1 cut(s)	671
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	195, 413
AjnI	CCWGG	2 cut(s)	178, 708
AluBI	AGCT	5 cut(s)	46, 91, 506, 544, 610
AluI	AGCT	5 cut(s)	46, 91, 506, 544, 610
AlwI	GGATC	1 cut(s)	700
Ama87I	CYCGRG	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	2 cut(s)	198, 421
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	154, 428
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	180, 710
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	721
BfoI	RGCGCY	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	317
BisI	GCNGC	3 cut(s)	37, 61, 696
BlsI	GCNGC	3 cut(s)	38, 62, 697
Bme1390I	CCNGG	3 cut(s)	24, 180, 710
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	2 cut(s)	117, 366
BmrFI	CCNGG	3 cut(s)	24, 180, 710
BmsI	GCATC	2 cut(s)	217, 508
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	207, 353, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	180, 710
BseDI	CCNNGG	3 cut(s)	207, 353, 709
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	3 cut(s)	374, 513, 597
BseNI	ACTGG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	1 cut(s)	682
BsgI	GTGCAG	1 cut(s)	693
BsiHKCI	CYCGRG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	78, 705
BspACI	CCGC	4 cut(s)	37, 52, 60, 130
BspCNI	CTCAG	3 cut(s)	373, 514, 598
BspLI	GGNNCC	2 cut(s)	117, 366
BspMI	ACCTGC	1 cut(s)	317
BspPI	GGATC	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	666
BssECI	CCNNGG	3 cut(s)	207, 353, 709
BssMI	GATC	2 cut(s)	78, 705
BssT1I	CCWWGG	2 cut(s)	207, 353
Bst2UI	CCWGG	2 cut(s)	180, 710
BstAPI	GCANNNNNTGC	2 cut(s)	671, 692
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	3 cut(s)	360, 522, 606
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	81, 708
BstMBI	GATC	2 cut(s)	78, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 671, 692
BstNI	CCWGG	2 cut(s)	180, 710
BstNSI	RCATGY	1 cut(s)	450
BstPI	GGTNACC	1 cut(s)	160
BstSCI	CCNGG	3 cut(s)	22, 178, 708
BstV1I	GCAGC	1 cut(s)	682
BtsCI	GGATG	1 cut(s)	562
BveI	ACCTGC	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	448
CfoI	GCGC	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	350
CviAII	CATG	2 cut(s)	395, 447
CviJI	RGCY	8 cut(s)	31, 46, 63, 91, 506, 544, 610, 714
CviKI_1	RGCY	8 cut(s)	31, 46, 63, 91, 506, 544, 610, 714
DdeI	CTNAG	3 cut(s)	360, 522, 606
DpnI	GATC	2 cut(s)	80, 707
DpnII	GATC	2 cut(s)	78, 705
DraIII	CACNNNGTG	1 cut(s)	671
Eco130I	CCWWGG	2 cut(s)	207, 353
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	294
Eco91I	GGTNACC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	178, 708
EcoT14I	CCWWGG	2 cut(s)	207, 353
EcoT22I	ATGCAT	1 cut(s)	452
ErhI	CCWWGG	2 cut(s)	207, 353
FaeI	CATG	2 cut(s)	398, 450
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	2 cut(s)	394, 446
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	3 cut(s)	37, 61, 696
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	3 cut(s)	37, 61, 696
FspBI	CTAG	1 cut(s)	721
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	3 cut(s)	37, 61, 696
HaeII	RGCGCY	1 cut(s)	302
HapII	CCGG	1 cut(s)	24
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	2 cut(s)	398, 450
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	4 cut(s)	191, 358, 470, 587
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	2 cut(s)	154, 428
Hpy166II	GTNNAC	1 cut(s)	618
Hpy188I	TCNGA	7 cut(s)	83, 125, 271, 475, 499, 575, 607
Hpy188III	TCNNGA	2 cut(s)	224, 362
Hpy8I	GTNNAC	1 cut(s)	618
HpyAV	CCTTC	3 cut(s)	181, 206, 407
HpyCH4V	TGCA	8 cut(s)	287, 446, 450, 551, 584, 644, 674, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 671, 692
HpyF3I	CTNAG	3 cut(s)	360, 522, 606
Hsp92II	CATG	2 cut(s)	398, 450
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	78, 705
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	2 cut(s)	217, 508
MaeI	CTAG	1 cut(s)	721
MaeIII	GTNAC	1 cut(s)	160
MalI	GATC	2 cut(s)	80, 707
MboI	GATC	2 cut(s)	78, 705
MboII	GAAGA	1 cut(s)	241
MluCI	AATT	5 cut(s)	198, 421, 429, 455, 687
MlyI	GAGTC	1 cut(s)	352
MmeI	TCCRAC	1 cut(s)	658
MnlI	CCTC	7 cut(s)	4, 50, 151, 469, 553, 556, 640
Mph1103I	ATGCAT	1 cut(s)	452
MseI	TTAA	3 cut(s)	93, 324, 405
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	3 cut(s)	24, 180, 710
MvaI	CCWGG	2 cut(s)	180, 710
MwoI	GCNNNNNNNGC	3 cut(s)	60, 671, 692
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	78, 705
NlaIII	CATG	2 cut(s)	398, 450
NlaIV	GGNNCC	2 cut(s)	117, 366
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	452
NspI	RCATGY	1 cut(s)	450
PaeI	GCATGC	1 cut(s)	450
PaqCI	CACCTGC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	191, 470, 587
PfoI	TCCNGGA	1 cut(s)	22
PkrI	GCNGC	3 cut(s)	38, 62, 697
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Psp6I	CCWGG	2 cut(s)	178, 708
PspEI	GGTNACC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	178, 708
PspN4I	GGNNCC	2 cut(s)	117, 366
PspPI	GGNCC	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	93, 324, 405
SatI	GCNGC	3 cut(s)	37, 61, 696
Sau3AI	GATC	2 cut(s)	78, 705
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	352
ScrFI	CCNGG	3 cut(s)	24, 180, 710
SfaNI	GCATC	2 cut(s)	217, 508
SinI	GGWCC	1 cut(s)	350
SphI	GCATGC	1 cut(s)	450
Sse9I	AATT	5 cut(s)	198, 421, 429, 455, 687
SsiI	CCGC	4 cut(s)	37, 52, 60, 130
SspMI	CTAG	1 cut(s)	721
StyD4I	CCNGG	3 cut(s)	22, 178, 708
StyI	CCWWGG	2 cut(s)	207, 353
TaqI	TCGA	1 cut(s)	256
TasI	AATT	5 cut(s)	198, 421, 429, 455, 687
TauI	GCSGC	2 cut(s)	39, 63
TfiI	GAWTC	3 cut(s)	191, 470, 587
Tru1I	TTAA	3 cut(s)	93, 324, 405
Tru9I	TTAA	3 cut(s)	93, 324, 405
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	3 cut(s)	383, 415, 423
TspGWI	ACGGA	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	2 cut(s)	198, 421
XceI	RCATGY	1 cut(s)	450
XspI	CTAG	1 cut(s)	721
Zsp2I	ATGCAT	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.