Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0019948

Physical Location & Seq

Genomic Coordinates Reverse (-)

2153801 .. 2158516

Gene Structure 4716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG015000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCATTTCTGGAAGCTGCTTGCTCCCATGTTGAACTCAACCATCACCTCCCCGCGCCTCCCATCCAGGGCACCTTATCTCCTAGCTTTGTTAATGTACTTAAGAATGCTAGATGCTTGGGTGAAGATGCCTGTGCACCACATATGAGGGACATCTTCTATCGAATGGGGTTATCTGACAAGGATATTGTTGCACTCTCTCGGGCGCTGACCACATGCTCATTCTGTGTTAATCTTTTATGGTCTGGTTTTGATGGTCCTTGGACTAAGGAACCCCTGACGTTTGATAACTCAATACTTCATGTAAGACTTAAACTTGACGGTGAAAATTTCATAATTTCATATTATTTTGCTTGCATAGAATTGCTGAAAGGGGAATCAGAGGGATTGCTGAAACTTTCATCAGATACAGCTCTGTTAGATGATGCTGAGTTCCGTAAATATGTTGAGCTATATGCAAAGGATGAGGAGGCATTTTTCAGAGATTATGCTGAATCACATAAGAAACTCTCTGAGCTTGGGTTTACTACAAGTTCCTCCAAGATTGTTGCAAAGGGTAGCACCATACTGGCACAAGGTGCAGTTGGAGTTGCAATTTGTGCTGCTGTTGTCATCCTGGGCTACTTCTATGAAGTTCGTAAAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

216

Amino Acids

23.99

Weight (kDa)

5.69

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	44 - 155	1.8e-06	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019948)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251981 RchiOBHm_Chr6g0252121 RchiOBHm_Chr6g0252131
rosa_multiflora	Rmu_sc0002522.1_g000007
rosa_samantha	Rh6AG019500 Rh6BG015000
rosa_wichuraiana	Rw6G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	1 cut(s)	56
AciI	CCGC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	328
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	1 cut(s)	99
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	66, 615
AluBI	AGCT	5 cut(s)	17, 87, 413, 451, 517
AluI	AGCT	5 cut(s)	17, 87, 413, 451, 517
Alw21I	GWGCWC	1 cut(s)	139
Alw44I	GTGCAC	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	201
ApaLI	GTGCAC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	17, 602
ApoI	RAATTY	1 cut(s)	328
AspLEI	GCGC	2 cut(s)	58, 208
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	3 cut(s)	38, 134, 335
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	257
BaeGI	GKGCMC	2 cut(s)	74, 139
BanI	GGYRCC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	4, 589
BccI	CCATC	3 cut(s)	51, 71, 248
BciT130I	CCWGG	2 cut(s)	68, 617
BfaI	CTAG	2 cut(s)	84, 111
BfoI	RGCGCY	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	101
BisI	GCNGC	2 cut(s)	18, 603
BlsI	GCNGC	2 cut(s)	19, 604
Bme1390I	CCNGG	2 cut(s)	68, 617
Bme18I	GGWCC	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	2 cut(s)	73, 273
BmrFI	CCNGG	2 cut(s)	68, 617
BmsI	GCATC	3 cut(s)	104, 118, 415
BsaJI	CCNNGG	3 cut(s)	67, 260, 616
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	573
BseBI	CCWGG	2 cut(s)	68, 617
BseDI	CCNNGG	3 cut(s)	67, 260, 616
BseGI	GGATG	3 cut(s)	63, 469, 612
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	420, 504
BseNI	ACTGG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	2 cut(s)	74, 139
BseXI	GCAGC	2 cut(s)	4, 589
BsgI	GTGCAG	1 cut(s)	600
Bsh1236I	CGCG	1 cut(s)	56
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	139
BsiHKCI	CYCGRG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	2 cut(s)	74, 139
BspACI	CCGC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	421, 505
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	2 cut(s)	73, 273
BspT107I	GGYRCC	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	573
BssECI	CCNNGG	3 cut(s)	67, 260, 616
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	2 cut(s)	68, 617
Bst4CI	ACNGT	1 cut(s)	323
BstAFI	CTTAAG	1 cut(s)	101
BstAPI	GCANNNNNTGC	2 cut(s)	578, 599
BstC8I	GCNNGC	2 cut(s)	22, 355
BstDEI	CTNAG	3 cut(s)	267, 429, 513
BstF5I	GGATG	3 cut(s)	63, 469, 612
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	209
BstHHI	GCGC	2 cut(s)	58, 208
BstMWI	GCNNNNNNNGC	2 cut(s)	578, 599
BstNI	CCWGG	2 cut(s)	68, 617
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	66, 615
BstSLI	GKGCMC	2 cut(s)	74, 139
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	4, 589
BtsCI	GGATG	3 cut(s)	63, 469, 612
Cac8I	GCNNGC	2 cut(s)	22, 355
CfoI	GCGC	2 cut(s)	58, 208
Cfr13I	GGNCC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	98
CviAII	CATG	3 cut(s)	29, 216, 302
CviJI	RGCY	6 cut(s)	17, 87, 413, 451, 517, 621
CviKI_1	RGCY	6 cut(s)	17, 87, 413, 451, 517, 621
CviQI	GTAC	1 cut(s)	98
DdeI	CTNAG	3 cut(s)	267, 429, 513
DraIII	CACNNNGTG	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	257
Eco88I	CYCGRG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	66, 615
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	3 cut(s)	32, 219, 305
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	3 cut(s)	28, 215, 301
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	18, 603
FokI	GGATG	3 cut(s)	50, 476, 599
Fsp4HI	GCNGC	2 cut(s)	18, 603
FspBI	CTAG	2 cut(s)	84, 111
GlaI	GCGC	2 cut(s)	57, 207
GluI	GCNGC	2 cut(s)	18, 603
HaeII	RGCGCY	1 cut(s)	209
HhaI	GCGC	2 cut(s)	58, 208
Hin1II	CATG	3 cut(s)	32, 219, 305
Hin6I	GCGC	2 cut(s)	56, 206
HinP1I	GCGC	2 cut(s)	56, 206
HinfI	GANTC	2 cut(s)	377, 494
HphI	GGTGA	3 cut(s)	38, 134, 335
Hpy166II	GTNNAC	2 cut(s)	137, 525
Hpy188I	TCNGA	5 cut(s)	178, 382, 406, 482, 514
Hpy188III	TCNNGA	1 cut(s)	11
Hpy8I	GTNNAC	2 cut(s)	137, 525
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	281
HpyCH4V	TGCA	7 cut(s)	137, 194, 357, 458, 551, 581, 593
HpyF10VI	GCNNNNNNNGC	2 cut(s)	578, 599
HpyF3I	CTNAG	3 cut(s)	267, 429, 513
HpySE526I	ACGT	1 cut(s)	281
Hsp92II	CATG	3 cut(s)	32, 219, 305
HspAI	GCGC	2 cut(s)	56, 206
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	8 cut(s)	53, 80, 145, 231, 290, 554, 602, 629
Lsp1109I	GCAGC	2 cut(s)	4, 589
LweI	GCATC	3 cut(s)	104, 118, 415
MaeI	CTAG	2 cut(s)	84, 111
MaeII	ACGT	1 cut(s)	281
MboII	GAAGA	2 cut(s)	137, 148
MhlI	GDGCHC	2 cut(s)	74, 139
MluCI	AATT	4 cut(s)	328, 336, 362, 594
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	7 cut(s)	59, 69, 141, 376, 460, 463, 547
MseI	TTAA	4 cut(s)	93, 102, 231, 312
MspCI	CTTAAG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	68, 617
Mva1269I	GAATGC	1 cut(s)	112
MvaI	CCWGG	2 cut(s)	68, 617
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	578, 599
NdeI	CATATG	1 cut(s)	144
NlaIII	CATG	3 cut(s)	32, 219, 305
NlaIV	GGNNCC	2 cut(s)	73, 273
NspI	RCATGY	1 cut(s)	219
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	377, 494
PkrI	GCNGC	2 cut(s)	19, 604
Psp6I	CCWGG	2 cut(s)	66, 615
PspGI	CCWGG	2 cut(s)	66, 615
PspN4I	GGNNCC	2 cut(s)	73, 273
PspPI	GGNCC	1 cut(s)	257
RsaI	GTAC	1 cut(s)	99
RsaNI	GTAC	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	93, 102, 231, 312
SatI	GCNGC	2 cut(s)	18, 603
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	2 cut(s)	68, 617
SduI	GDGCHC	2 cut(s)	74, 139
SetI	ASST	9 cut(s)	19, 51, 77, 89, 284, 415, 453, 519, 580
SfaNI	GCATC	3 cut(s)	104, 118, 415
SinI	GGWCC	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	4 cut(s)	328, 336, 362, 594
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	2 cut(s)	84, 111
StyD4I	CCNGG	2 cut(s)	66, 615
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	328, 336, 362, 594
TatI	WGTACW	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	377, 494
Tru1I	TTAA	4 cut(s)	93, 102, 231, 312
Tru9I	TTAA	4 cut(s)	93, 102, 231, 312
TseI	GCWGC	2 cut(s)	17, 602
TspDTI	ATGAA	5 cut(s)	290, 322, 330, 390, 645
TspGWI	ACGGA	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	101
VneI	GTGCAC	1 cut(s)	135
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	2 cut(s)	84, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.