Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019948

Physical Location & Seq

Genomic Coordinates Reverse (-)

7310174 .. 7311818

Gene Structure 1645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22604

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATAATACAACTTGCTGGTGTTGTTGCTGTTGAGGTCACCATTGATTTTACTCCTGGCAGGAAGGATTCAAAAATTTCTCCCAAGGAAGGACAACTTCCAGATGCTAAAAAAGGTGCAGCACATATGAGGGACATCTTCTATCGAATGGGGTTATCTGACAAGGATATTGTTGCACTCTCTCGGGCGCTGACCACATGCTCATTCTGCGTTAATCTTTTATGGTCTGGTTTTGATGGTCCTTGGACTCAGGAACCCCTGAAGTTTGATAACTCAATACTTCATGTAAGACTTAAACTTGACGGTGAAAATTTCATAATTTCATATTATTTTTTTTGGTACAACATAATTTCATATTATTTTGCTTGCATGTCTGTCATGCATTTGTACTCTTTCCATTTTGGTCTGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

138

Amino Acids

15.87

Weight (kDa)

7.72

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	2 - 62	1e-10	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019948)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0251981 RchiOBHm_Chr6g0252121 RchiOBHm_Chr6g0252131
rosa_multiflora	Rmu_sc0002522.1_g000007
rosa_samantha	Rh6AG019500 Rh6BG015000
rosa_wichuraiana	Rw6G000060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	75, 310, 410
AcuI	CTGAAG	1 cut(s)	281
AfaI	GTAC	2 cut(s)	341, 389
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	72
AjnI	CCWGG	1 cut(s)	55
Ama87I	CYCGRG	1 cut(s)	183
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	3 cut(s)	75, 310, 410
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	2 cut(s)	31, 317
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	239
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	230
BciT130I	CCWGG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	191
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	239
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	94
BsaJI	CCNNGG	2 cut(s)	84, 242
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	84, 242
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	84, 242
BssT1I	CCWWGG	2 cut(s)	84, 242
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	367
BstDEI	CTNAG	1 cut(s)	249
BstEII	GGTNACC	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	201, 373
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	131
Cac8I	GCNNGC	1 cut(s)	367
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	239
Csp6I	GTAC	2 cut(s)	340, 388
CviAII	CATG	4 cut(s)	198, 284, 370, 379
CviQI	GTAC	2 cut(s)	340, 388
DdeI	CTNAG	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	84, 242
Eco47I	GGWCC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	84, 242
EcoT22I	ATGCAT	1 cut(s)	384
ErhI	CCWWGG	2 cut(s)	84, 242
FaeI	CATG	4 cut(s)	201, 287, 373, 382
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	197, 283, 369, 378
FauNDI	CATATG	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	120
Fsp4HI	GCNGC	1 cut(s)	120
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	191
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	201, 287, 373, 382
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HinfI	GANTC	2 cut(s)	68, 247
HphI	GGTGA	2 cut(s)	31, 317
Hpy188I	TCNGA	2 cut(s)	160, 408
Hpy188III	TCNNGA	2 cut(s)	101, 251
HpyAV	CCTTC	2 cut(s)	58, 83
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	4 cut(s)	119, 176, 369, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	207
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	201, 287, 373, 382
HspAI	GCGC	1 cut(s)	188
LpnPI	CCDG	8 cut(s)	3, 42, 46, 69, 114, 213, 236, 272
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	130
MluCI	AATT	5 cut(s)	75, 310, 318, 348, 410
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	2 cut(s)	28, 123
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	2 cut(s)	213, 294
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	207
NdeI	CATATG	1 cut(s)	126
NlaIII	CATG	4 cut(s)	201, 287, 373, 382
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	37
NsiI	ATGCAT	1 cut(s)	384
NspI	RCATGY	2 cut(s)	201, 373
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	55
PspEI	GGTNACC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	239
RsaI	GTAC	2 cut(s)	341, 389
RsaNI	GTAC	2 cut(s)	340, 388
SaqAI	TTAA	2 cut(s)	213, 294
SatI	GCNGC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	2 cut(s)	39, 118
SfaNI	GCATC	1 cut(s)	94
SinI	GGWCC	1 cut(s)	239
Sse9I	AATT	5 cut(s)	75, 310, 318, 348, 410
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	84, 242
TaaI	ACNGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	145
TasI	AATT	5 cut(s)	75, 310, 318, 348, 410
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	213, 294
Tru9I	TTAA	2 cut(s)	213, 294
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	4 cut(s)	272, 304, 312, 342
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	3 cut(s)	75, 310, 410
XceI	RCATGY	2 cut(s)	201, 373
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.