RchiOBHm_Chr6g0260201

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0020588
Physical Location & Seq
Forward (+)
15291078 .. 15291930
853 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23333

Sequence Viewer

Length: 561 bp
ATGGGGTGGGCCTGTGGCGGCCCAAATTCCAGTGCAACTGGAAATGGTTCAAGCAAGACTTCTGGATTTCCTCCTGAATTTCATGACCGTCTCACGAGGCGGCGACAACTACTTTGGCAAGGTAGAGAAAAGGCATCGGATATTATAAAAATTTGTATGTCACGAGATGGCCTTTTCAGGTCTCCGGGAGAGATCTACCCGGCCAGGTCTGGTGGTGATTGTAGAACGTGGCAGCAAGCTTACTTGAATGCACTAAAAAGATTGGATATCACTTACCACTCTTTTGCTCGCACTGAACAAGAATGGAAGCTTGCACAGAGCACAATGGAAACTGCTTCCAGTGGATTGTCTTCTGCAACCAACGAACTTAATATTGCATCTCTCAAAGCAAAGTCAGCTTCAGGTGATTTACAGAGCACGGTTCTTGCTATGAGGGATTGTGCATGTGAAGCCAGTGTCGCACTGATGGCATATGCTGGTGTTTCAAATTGTCATTCTACTTTAACTTCTGAATGCGGTTTTATGCTTGAAGAGGTAAAGTTTACAAGTGACATCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

186

Amino Acids

20.25

Weight (kDa)

7.57

Isoelectric Point (pI)

63.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020588)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0260201
rosa_samantha Rh6AG112000 Rh6BG105400 Rh6CG100000 Rh6DG092600
rosa_wichuraiana Rw6G009930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AciI CCGC 3 cut(s) 18, 100, 516
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 3 cut(s) 25, 77, 150
AcuI CTGAAG 1 cut(s) 384
AgsI TTSAA 4 cut(s) 51, 247, 486, 530
AjnI CCWGG 1 cut(s) 203
AluBI AGCT 3 cut(s) 239, 310, 398
AluI AGCT 3 cut(s) 239, 310, 398
Alw21I GWGCWC 2 cut(s) 323, 419
Alw26I GTCTC 2 cut(s) 95, 186
AoxI GGCC 4 cut(s) 9, 19, 169, 201
ApeKI GCWGC 1 cut(s) 232
ApoI RAATTY 3 cut(s) 25, 77, 150
ArsI GACNNNNNNTTYG 2 cut(s) 96, 128
Asp700I GAANNNNTTC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 9, 20
AsuC2I CCSGG 2 cut(s) 186, 200
AsuHPI GGTGA 2 cut(s) 227, 416
BauI CACGAG 2 cut(s) 94, 162
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 323, 419
BbvI GCAGC 1 cut(s) 244
BccI CCATC 2 cut(s) 161, 460
BciT130I CCWGG 1 cut(s) 205
BcnI CCSGG 2 cut(s) 186, 200
BcoDI GTCTC 2 cut(s) 95, 186
BglII AGATCT 1 cut(s) 192
BisI GCNGC 3 cut(s) 19, 101, 233
BlsI GCNGC 3 cut(s) 20, 102, 234
Bme1390I CCNGG 3 cut(s) 186, 200, 205
BmgT120I GGNCC 2 cut(s) 9, 20
BmrFI CCNGG 3 cut(s) 186, 200, 205
BmsI GCATC 2 cut(s) 143, 386
BpiI GAAGAC 1 cut(s) 342
BpuMI CCSGG 2 cut(s) 186, 200
BsaI GGTCTC 1 cut(s) 186
Bse1I ACTGG 4 cut(s) 30, 43, 339, 453
BseBI CCWGG 1 cut(s) 205
BseGI GGATG 1 cut(s) 552
BseNI ACTGG 4 cut(s) 30, 43, 339, 453
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 4 cut(s) 11, 21, 171, 203
BsiHKAI GWGCWC 2 cut(s) 323, 419
BsiSI CCGG 2 cut(s) 185, 200
BsmAI GTCTC 2 cut(s) 95, 186
BsmBI CGTCTC 1 cut(s) 95
BsmI GAATGC 2 cut(s) 253, 518
BsnI GGCC 4 cut(s) 11, 21, 171, 203
Bso31I GGTCTC 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 323, 419
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 3 cut(s) 18, 100, 516
BspANI GGCC 4 cut(s) 11, 21, 171, 203
BspHI TCATGA 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 186
BsrI ACTGG 4 cut(s) 30, 43, 339, 453
BssMI GATC 1 cut(s) 192
BssSI CACGAG 2 cut(s) 94, 162
Bst2BI CACGAG 2 cut(s) 94, 162
Bst2UI CCWGG 1 cut(s) 205
Bst4CI ACNGT 2 cut(s) 89, 421
Bst6I CTCTTC 1 cut(s) 525
BstC8I GCNNGC 3 cut(s) 237, 289, 312
BstF5I GGATG 1 cut(s) 552
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 2 cut(s) 95, 186
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 4 cut(s) 395, 449, 458, 467
BstNI CCWGG 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 447
BstSCI CCNGG 3 cut(s) 184, 198, 203
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuRI GGCC 4 cut(s) 11, 21, 171, 203
BtsCI GGATG 1 cut(s) 552
BtsIMutI CAGTG 5 cut(s) 37, 291, 346, 460, 461
Cac8I GCNNGC 3 cut(s) 237, 289, 312
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 9, 20
CviAII CATG 2 cut(s) 83, 444
CviJI RGCY 8 cut(s) 11, 21, 171, 203, 239, 310, 398, 452
CviKI_1 RGCY 8 cut(s) 11, 21, 171, 203, 239, 310, 398, 452
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 525
EarI CTCTTC 1 cut(s) 525
Eco31I GGTCTC 1 cut(s) 186
Eco32I GATATC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 384
EcoRII CCWGG 1 cut(s) 203
EcoRV GATATC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 86, 447
FaiI YATR 8 cut(s) 84, 146, 158, 431, 445, 472, 474, 524
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 2 cut(s) 82, 443
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 3 cut(s) 19, 101, 233
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 3 cut(s) 19, 101, 233
GluI GCNGC 3 cut(s) 19, 101, 233
HaeIII GGCC 4 cut(s) 11, 21, 171, 203
HapII CCGG 2 cut(s) 185, 200
Hin1II CATG 2 cut(s) 86, 447
HindIII AAGCTT 2 cut(s) 237, 308
HpaII CCGG 2 cut(s) 185, 200
HphI GGTGA 2 cut(s) 227, 416
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 2 cut(s) 139, 511
Hpy188III TCNNGA 5 cut(s) 63, 74, 83, 94, 162
Hpy8I GTNNAC 1 cut(s) 543
HpyCH4III ACNGT 2 cut(s) 89, 421
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 6 cut(s) 35, 251, 314, 356, 377, 443
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 449, 458, 467
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 86, 447
Kzo9I GATC 1 cut(s) 192
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 2 cut(s) 143, 386
MaeII ACGT 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 159, 548
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 2 cut(s) 342, 542
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 2 cut(s) 323, 419
MluCI AATT 4 cut(s) 25, 77, 150, 487
MnlI CCTC 4 cut(s) 81, 90, 426, 526
MroXI GAANNNNTTC 1 cut(s) 46
MseI TTAA 2 cut(s) 369, 503
MspI CCGG 2 cut(s) 185, 200
MspR9I CCNGG 3 cut(s) 186, 200, 205
Mva1269I GAATGC 2 cut(s) 253, 518
MvaI CCWGG 1 cut(s) 205
MwoI GCNNNNNNNGC 4 cut(s) 395, 449, 458, 467
NciI CCSGG 2 cut(s) 186, 200
NdeI CATATG 1 cut(s) 472
NdeII GATC 1 cut(s) 192
NlaIII CATG 2 cut(s) 86, 447
NmuCI GTSAC 2 cut(s) 159, 548
NspI RCATGY 1 cut(s) 447
PagI TCATGA 1 cut(s) 82
PctI GAATGC 2 cut(s) 253, 518
PdmI GAANNNNTTC 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 3 cut(s) 20, 102, 234
PsiI TTATAA 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 203
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 2 cut(s) 9, 20
PsuI RGATCY 1 cut(s) 192
SaqAI TTAA 2 cut(s) 369, 503
SatI GCNGC 3 cut(s) 19, 101, 233
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 2 cut(s) 9, 20
ScrFI CCNGG 3 cut(s) 186, 200, 205
SduI GDGCHC 2 cut(s) 323, 419
SetI ASST 9 cut(s) 124, 182, 209, 230, 241, 312, 400, 406, 537
SfaNI GCATC 2 cut(s) 143, 386
Sse9I AATT 4 cut(s) 25, 77, 150, 487
SsiI CCGC 3 cut(s) 18, 100, 516
SspI AATATT 1 cut(s) 373
StyD4I CCNGG 3 cut(s) 184, 198, 203
TaaI ACNGT 2 cut(s) 89, 421
TaiI ACGT 1 cut(s) 230
TasI AATT 4 cut(s) 25, 77, 150, 487
TauI GCSGC 2 cut(s) 21, 103
Tru1I TTAA 2 cut(s) 369, 503
Tru9I TTAA 2 cut(s) 369, 503
TscAI CASTG 5 cut(s) 37, 298, 346, 460, 468
TseFI GTSAC 2 cut(s) 159, 548
TseI GCWGC 1 cut(s) 232
Tsp45I GTSAC 2 cut(s) 159, 548
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 5 cut(s) 37, 298, 346, 460, 468
XapI RAATTY 3 cut(s) 25, 77, 150
XceI RCATGY 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.