Rh6CG100000

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
11031326 .. 11058470
27145 bp
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UTR
Exon/CDS
Intron
Rh6CG100000.1

Sequence Viewer

Length: 450 bp
ATGGGGTGGGCCTGTGGCGGCCCAAATTCCAGTGCAACTGGAAATGGTTCAAGCAAGACTTCTGGAATTCCTCCTGAATTTCATGACCATCTCACGAGGCGGCGACAACTACTATGGCAAGCTAGAGAAAAGGCATCGGATATTATAAAAATTTGTATGTCTGTACTGGAGTTTGAGGCATCACGAGATGGCCTTTTCCGGTCTCCGGGAGAGATCTACCCGGCCAGGTCTGGTGGTGATTGTAGAACGTGGCAGCAAGCTTACTTGAATGCACTAAAAAGATTGGATATCACTTACCACTCTTTTGCTCGCACTGAACAAGAATGGAAGCTTGCCCAGAGCACAATGGAAACTGCTTCCAGTGGATTGTCTTCTGCAACCAACGAACTTAATATTGCATCTCTCAAAGCAAAGTCAGCTTCAGATCATTATTACAATTATAGAAATTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

149

Amino Acids

16.61

Weight (kDa)

8.82

Isoelectric Point (pI)

59.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020588)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0260201
rosa_samantha Rh6AG112000 Rh6BG105400 Rh6CG100000 Rh6DG092600
rosa_wichuraiana Rw6G009930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AciI CCGC 2 cut(s) 18, 100
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 4 cut(s) 25, 66, 77, 150
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 2 cut(s) 51, 268
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 4 cut(s) 122, 260, 331, 419
AluI AGCT 4 cut(s) 122, 260, 331, 419
Alw21I GWGCWC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 4 cut(s) 9, 19, 190, 222
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 4 cut(s) 25, 66, 77, 150
Asp700I GAANNNNTTC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 9, 20
AsuC2I CCSGG 2 cut(s) 207, 221
AsuHPI GGTGA 1 cut(s) 248
BauI CACGAG 2 cut(s) 94, 183
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 265
BccI CCATC 2 cut(s) 96, 182
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 2 cut(s) 207, 221
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 123
BglII AGATCT 1 cut(s) 213
BisI GCNGC 3 cut(s) 19, 101, 254
BlsI GCNGC 3 cut(s) 20, 102, 255
Bme1390I CCNGG 3 cut(s) 207, 221, 226
BmgT120I GGNCC 2 cut(s) 9, 20
BmrFI CCNGG 3 cut(s) 207, 221, 226
BmsI GCATC 3 cut(s) 143, 188, 407
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 207, 221
BsaI GGTCTC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 4 cut(s) 30, 43, 171, 360
BseBI CCWGG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 4 cut(s) 30, 43, 171, 360
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 4 cut(s) 11, 21, 192, 224
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 3 cut(s) 199, 206, 221
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 4 cut(s) 11, 21, 192, 224
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 344
Bsp143I GATC 2 cut(s) 213, 424
BspACI CCGC 2 cut(s) 18, 100
BspANI GGCC 4 cut(s) 11, 21, 192, 224
BspHI TCATGA 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 207
BsrI ACTGG 4 cut(s) 30, 43, 171, 360
BssMI GATC 2 cut(s) 213, 424
BssSI CACGAG 2 cut(s) 94, 183
Bst2BI CACGAG 2 cut(s) 94, 183
Bst2UI CCWGG 1 cut(s) 226
BstC8I GCNNGC 4 cut(s) 120, 258, 310, 333
BstKTI GATC 2 cut(s) 216, 427
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 213, 424
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 205, 219, 224
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 4 cut(s) 11, 21, 192, 224
BtsIMutI CAGTG 3 cut(s) 37, 312, 367
Cac8I GCNNGC 4 cut(s) 120, 258, 310, 333
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 9, 20
Csp6I GTAC 1 cut(s) 164
CviAII CATG 1 cut(s) 83
CviJI RGCY 8 cut(s) 11, 21, 122, 192, 224, 260, 331, 419
CviKI_1 RGCY 8 cut(s) 11, 21, 122, 192, 224, 260, 331, 419
CviQI GTAC 1 cut(s) 164
DpnI GATC 2 cut(s) 215, 426
DpnII GATC 2 cut(s) 213, 424
EaeI YGGCCR 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 207
Eco32I GATATC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 289
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 84, 115, 146, 158, 441
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 19, 101, 254
Fsp4HI GCNGC 3 cut(s) 19, 101, 254
FspBI CTAG 1 cut(s) 123
GluI GCNGC 3 cut(s) 19, 101, 254
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 4 cut(s) 11, 21, 192, 224
HapII CCGG 3 cut(s) 199, 206, 221
Hin1II CATG 1 cut(s) 86
HindIII AAGCTT 2 cut(s) 258, 329
HpaII CCGG 3 cut(s) 199, 206, 221
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 2 cut(s) 139, 424
Hpy188III TCNNGA 5 cut(s) 63, 74, 83, 94, 183
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 4 cut(s) 35, 272, 377, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 2 cut(s) 213, 424
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 3 cut(s) 143, 188, 407
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 248
MalI GATC 2 cut(s) 215, 426
MboI GATC 2 cut(s) 213, 424
MboII GAAGA 1 cut(s) 363
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 6 cut(s) 25, 66, 77, 150, 436, 445
MnlI CCTC 3 cut(s) 81, 90, 169
MroXI GAANNNNTTC 1 cut(s) 46
MseI TTAA 2 cut(s) 390, 448
MspI CCGG 3 cut(s) 199, 206, 221
MspR9I CCNGG 3 cut(s) 207, 221, 226
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 416
NciI CCSGG 2 cut(s) 207, 221
NdeII GATC 2 cut(s) 213, 424
NlaIII CATG 1 cut(s) 86
PagI TCATGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 3 cut(s) 20, 102, 255
PsiI TTATAA 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 2 cut(s) 9, 20
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 390, 448
SatI GCNGC 3 cut(s) 19, 101, 254
Sau3AI GATC 2 cut(s) 213, 424
Sau96I GGNCC 2 cut(s) 9, 20
ScrFI CCNGG 3 cut(s) 207, 221, 226
SduI GDGCHC 1 cut(s) 344
SetI ASST 6 cut(s) 124, 230, 251, 262, 333, 421
SfaNI GCATC 3 cut(s) 143, 188, 407
Sse9I AATT 6 cut(s) 25, 66, 77, 150, 436, 445
SsiI CCGC 2 cut(s) 18, 100
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 3 cut(s) 205, 219, 224
TaiI ACGT 1 cut(s) 251
TasI AATT 6 cut(s) 25, 66, 77, 150, 436, 445
TatI WGTACW 1 cut(s) 163
TauI GCSGC 2 cut(s) 21, 103
Tru1I TTAA 2 cut(s) 390, 448
Tru9I TTAA 2 cut(s) 390, 448
TscAI CASTG 3 cut(s) 37, 319, 367
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 3 cut(s) 37, 319, 367
XapI RAATTY 4 cut(s) 25, 66, 77, 150
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.