Rh6AG112000

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
16655419 .. 16664222
8804 bp
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UTR
Exon/CDS
Intron
Rh6AG112000.1

Sequence Viewer

Length: 270 bp
ATGTCTATACTGGAGTTTGAGGCATCACGATATGGCCTTTTCTGGTCTCCAGGAGAGATCTACTCGACCAGGACTGTTGGTGATGGCACCGAACAAGAATGGAAGCTTGCACAGAGCACAATGGAAACTGCTTCCAGTGGATTGTCTTCTGCAACCAACAAACTTAGTATTGCATCTCTCAAAGCAAAGTCAGCTTCAGGTGATTTACAAAGCACGGTTCTTGCAATGAGGGATTGTGCATGTGAAGCCAGTGTTGCACTGATGGCATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

9.43

Weight (kDa)

4.73

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020588)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0260201
rosa_samantha Rh6AG112000 Rh6BG105400 Rh6CG100000 Rh6DG092600
rosa_wichuraiana Rw6G009930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 180
AjnI CCWGG 2 cut(s) 49, 68
AluBI AGCT 2 cut(s) 106, 194
AluI AGCT 2 cut(s) 106, 194
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 51
AoxI GGCC 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 92, 212
BanI GGYRCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 2 cut(s) 77, 256
BciT130I CCWGG 2 cut(s) 51, 70
BcoDI GTCTC 1 cut(s) 51
BglII AGATCT 1 cut(s) 57
Bme1390I CCNGG 2 cut(s) 51, 70
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 51, 70
BmsI GCATC 2 cut(s) 32, 182
BpiI GAAGAC 1 cut(s) 138
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 2 cut(s) 32, 33
BsaI GGTCTC 1 cut(s) 51
Bse1I ACTGG 3 cut(s) 15, 135, 249
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 2 cut(s) 51, 70
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 3 cut(s) 15, 135, 249
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 51
BsnI GGCC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 51
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 57
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 3 cut(s) 15, 135, 249
BssMI GATC 1 cut(s) 57
Bst2UI CCWGG 2 cut(s) 51, 70
Bst4CI ACNGT 2 cut(s) 76, 217
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 164
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 191, 245, 254, 263
BstNI CCWGG 2 cut(s) 51, 70
BstNSI RCATGY 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 49, 68
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 57
BstYI RGATCY 1 cut(s) 57
BsuRI GGCC 1 cut(s) 36
BtsIMutI CAGTG 3 cut(s) 142, 256, 257
Cac8I GCNNGC 1 cut(s) 108
CviAII CATG 1 cut(s) 240
CviJI RGCY 4 cut(s) 36, 106, 194, 248
CviKI_1 RGCY 4 cut(s) 36, 106, 194, 248
DdeI CTNAG 1 cut(s) 164
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 2 cut(s) 49, 68
FaeI CATG 1 cut(s) 243
FaiI YATR 4 cut(s) 8, 33, 241, 268
FatI CATG 1 cut(s) 239
GsuI CTGGAG 2 cut(s) 32, 33
HaeIII GGCC 1 cut(s) 36
Hin1II CATG 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 104
HphI GGTGA 2 cut(s) 92, 212
Hpy188III TCNNGA 1 cut(s) 27
HpyCH4III ACNGT 2 cut(s) 76, 217
HpyCH4V TGCA 6 cut(s) 110, 152, 173, 224, 239, 257
HpyF10VI GCNNNNNNNGC 4 cut(s) 191, 245, 254, 263
HpyF3I CTNAG 1 cut(s) 164
Hsp92II CATG 1 cut(s) 243
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 8 cut(s) 28, 36, 55, 63, 82, 148, 183, 262
LweI GCATC 2 cut(s) 32, 182
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 138
MflI RGATCY 1 cut(s) 57
MhlI GDGCHC 1 cut(s) 119
MnlI CCTC 2 cut(s) 13, 222
MspR9I CCNGG 2 cut(s) 51, 70
MvaI CCWGG 2 cut(s) 51, 70
MwoI GCNNNNNNNGC 4 cut(s) 191, 245, 254, 263
NdeII GATC 1 cut(s) 57
NlaIII CATG 1 cut(s) 243
NlaIV GGNNCC 1 cut(s) 88
NspI RCATGY 1 cut(s) 243
PfoI TCCNGGA 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 49, 68
PspGI CCWGG 2 cut(s) 49, 68
PspN4I GGNNCC 1 cut(s) 88
PsuI RGATCY 1 cut(s) 57
Sau3AI GATC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 51, 70
SduI GDGCHC 1 cut(s) 119
SetI ASST 3 cut(s) 108, 196, 202
SfaNI GCATC 2 cut(s) 32, 182
StyD4I CCNGG 2 cut(s) 49, 68
TaaI ACNGT 2 cut(s) 76, 217
TaqI TCGA 1 cut(s) 65
TscAI CASTG 3 cut(s) 142, 256, 264
TspRI CASTG 3 cut(s) 142, 256, 264
XceI RCATGY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.