Rh6DG092600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0020588
Physical Location & Seq
Forward (+)
10950131 .. 11012722
62592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG092600.1

Sequence Viewer

Length: 615 bp
ATGGGGTGGGCCTGTGGCGGCCCAAATTCCAGTGCAACTGGAAATGGTTCAAGCAAGACTTCTGGAATTCCTCCTGAATTTCATGACCATCTCACGAGGCGGCGACAACTACTATGGCAAGCTAGAGAAAAGGCATCGGATATTATAAAAATTTGTATGTCTGTACTGGAGTTTGAGGCATCACGAGATGGCCTTTTCCGGTCTCCGGGAGAGATCTACCCGGCCAGGTCTGGTGGTGATTGTAGAACGTGGCAGCAAGCTTACTTGAATGCACTAAAAAGATTGGATATCACTTACCACTCTTTTGCTCGCACTGAACAAGAATGGAAGCTTGCCCAGAGCACAATGGAAACTGCTTCCAGTGGATTGTCTTCTGCAACCAACGAACTTAATATTGCATCTCTCAAAGCAAAGTCAGCTTCAGGTGATTTACAGAGCACGGTTCTTGCAATGAGGGATTGTGCATGTGAAGCCAGTGTCGCACTGATGGCATATACTGGTGTTTCAAATCGTCATTCTACTTTAACTTCTGAATGCGGTTTTATGCTTGAAGAGCTTGAAGAGGAGTCAAAGCGAGCAAACCCAGAAGAGCCGGCGCCTTTGACTGGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

204

Amino Acids

22.24

Weight (kDa)

5.86

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020588)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0260201
rosa_samantha Rh6AG112000 Rh6BG105400 Rh6CG100000 Rh6DG092600
rosa_wichuraiana Rw6G009930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 595
AciI CCGC 3 cut(s) 18, 100, 537
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 4 cut(s) 25, 66, 77, 150
AcuI CTGAAG 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 205, 605
AgsI TTSAA 5 cut(s) 51, 268, 507, 551, 560
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 5 cut(s) 122, 260, 331, 419, 556
AluI AGCT 5 cut(s) 122, 260, 331, 419, 556
Alw21I GWGCWC 2 cut(s) 344, 440
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 4 cut(s) 9, 19, 190, 222
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 4 cut(s) 25, 66, 77, 150
Asp700I GAANNNNTTC 1 cut(s) 46
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 2 cut(s) 9, 20
AsuC2I CCSGG 2 cut(s) 207, 221
AsuHPI GGTGA 2 cut(s) 248, 437
BanI GGYRCC 1 cut(s) 595
BauI CACGAG 2 cut(s) 94, 183
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 344, 440
BbvI GCAGC 1 cut(s) 265
BccI CCATC 3 cut(s) 96, 182, 481
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 2 cut(s) 207, 221
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 599
BglII AGATCT 1 cut(s) 213
BisI GCNGC 3 cut(s) 19, 101, 254
BlsI GCNGC 3 cut(s) 20, 102, 255
Bme1390I CCNGG 3 cut(s) 207, 221, 226
BmgT120I GGNCC 2 cut(s) 9, 20
BmiI GGNNCC 1 cut(s) 597
BmrFI CCNGG 3 cut(s) 207, 221, 226
BmsI GCATC 3 cut(s) 143, 188, 407
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 207, 221
BsaHI GRCGYC 1 cut(s) 596
BsaI GGTCTC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 605
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 7 cut(s) 30, 43, 171, 360, 474, 502, 610
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 205, 605
BseMI GCAATG 1 cut(s) 456
BseNI ACTGG 7 cut(s) 30, 43, 171, 360, 474, 502, 610
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 265
BshFI GGCC 4 cut(s) 11, 21, 192, 224
BshNI GGYRCC 1 cut(s) 595
BsiHKAI GWGCWC 2 cut(s) 344, 440
BsiSI CCGG 4 cut(s) 199, 206, 221, 593
BslI CCNNNNNNNGG 2 cut(s) 205, 605
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 2 cut(s) 274, 539
BsnI GGCC 4 cut(s) 11, 21, 192, 224
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 344, 440
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 3 cut(s) 18, 100, 537
BspANI GGCC 4 cut(s) 11, 21, 192, 224
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 597
BspQI GCTCTTC 2 cut(s) 546, 582
BspT107I GGYRCC 1 cut(s) 595
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 456
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 7 cut(s) 30, 43, 171, 360, 474, 502, 610
BssAI RCCGGY 1 cut(s) 592
BssMI GATC 1 cut(s) 213
BssNI GRCGYC 1 cut(s) 596
BssSI CACGAG 2 cut(s) 94, 183
Bst2BI CACGAG 2 cut(s) 94, 183
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 3 cut(s) 546, 555, 582
BstACI GRCGYC 1 cut(s) 596
BstC8I GCNNGC 6 cut(s) 120, 258, 310, 333, 576, 594
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 5 cut(s) 416, 470, 479, 488, 553
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 3 cut(s) 205, 219, 224
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 4 cut(s) 11, 21, 192, 224
BtsIMutI CAGTG 5 cut(s) 37, 312, 367, 481, 482
Cac8I GCNNGC 6 cut(s) 120, 258, 310, 333, 576, 594
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 2 cut(s) 9, 20
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 83, 465
CviQI GTAC 1 cut(s) 164
DinI GGCGCC 1 cut(s) 597
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 3 cut(s) 546, 555, 582
EarI CTCTTC 3 cut(s) 546, 555, 582
Eco31I GGTCTC 1 cut(s) 207
Eco32I GATATC 1 cut(s) 289
Eco57I CTGAAG 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 289
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
FaeI CATG 2 cut(s) 86, 468
FaiI YATR 8 cut(s) 84, 115, 146, 158, 466, 493, 495, 545
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 2 cut(s) 82, 464
Fnu4HI GCNGC 3 cut(s) 19, 101, 254
Fsp4HI GCNGC 3 cut(s) 19, 101, 254
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 597
GluI GCNGC 3 cut(s) 19, 101, 254
GsuI CTGGAG 1 cut(s) 188
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 4 cut(s) 11, 21, 192, 224
HapII CCGG 4 cut(s) 199, 206, 221, 593
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 2 cut(s) 86, 468
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HindIII AAGCTT 2 cut(s) 258, 329
HinfI GANTC 1 cut(s) 566
HpaII CCGG 4 cut(s) 199, 206, 221, 593
HphI GGTGA 2 cut(s) 248, 437
Hpy188I TCNGA 2 cut(s) 139, 532
Hpy188III TCNNGA 5 cut(s) 63, 74, 83, 94, 183
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 6 cut(s) 35, 272, 377, 398, 449, 464
HpyF10VI GCNNNNNNNGC 5 cut(s) 416, 470, 479, 488, 553
HpySE526I ACGT 1 cut(s) 248
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 2 cut(s) 86, 468
HspAI GCGC 1 cut(s) 596
KasI GGCGCC 1 cut(s) 595
KroI GCCGGC 1 cut(s) 592
KroNI GCCGGC 1 cut(s) 594
Kzo9I GATC 1 cut(s) 213
LguI GCTCTTC 2 cut(s) 546, 582
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 3 cut(s) 143, 188, 407
MaeI CTAG 1 cut(s) 123
MaeII ACGT 1 cut(s) 248
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 4 cut(s) 363, 563, 572, 599
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 2 cut(s) 344, 440
MluCI AATT 4 cut(s) 25, 66, 77, 150
Mly113I GGCGCC 1 cut(s) 596
MlyI GAGTC 1 cut(s) 575
MnlI CCTC 5 cut(s) 81, 90, 169, 447, 556
MroNI GCCGGC 1 cut(s) 592
MroXI GAANNNNTTC 1 cut(s) 46
MseI TTAA 2 cut(s) 390, 524
MspI CCGG 4 cut(s) 199, 206, 221, 593
MspR9I CCNGG 3 cut(s) 207, 221, 226
Mva1269I GAATGC 2 cut(s) 274, 539
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 416, 470, 479, 488, 553
NaeI GCCGGC 1 cut(s) 594
NarI GGCGCC 1 cut(s) 596
NciI CCSGG 2 cut(s) 207, 221
NdeII GATC 1 cut(s) 213
NgoMIV GCCGGC 1 cut(s) 592
NlaIII CATG 2 cut(s) 86, 468
NlaIV GGNNCC 1 cut(s) 597
NspI RCATGY 1 cut(s) 468
PagI TCATGA 1 cut(s) 82
PciSI GCTCTTC 2 cut(s) 546, 582
PctI GAATGC 2 cut(s) 274, 539
PdiI GCCGGC 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 3 cut(s) 20, 102, 255
PleI GAGTC 1 cut(s) 574
PluTI GGCGCC 1 cut(s) 599
PpsI GAGTC 1 cut(s) 574
PsiI TTATAA 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 2 cut(s) 9, 20
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SapI GCTCTTC 2 cut(s) 546, 582
SaqAI TTAA 2 cut(s) 390, 524
SatI GCNGC 3 cut(s) 19, 101, 254
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 9, 20
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 3 cut(s) 207, 221, 226
SduI GDGCHC 2 cut(s) 344, 440
SetI ASST 8 cut(s) 124, 230, 251, 262, 333, 421, 427, 558
SfaNI GCATC 3 cut(s) 143, 188, 407
SfoI GGCGCC 1 cut(s) 597
Sse9I AATT 4 cut(s) 25, 66, 77, 150
SsiI CCGC 3 cut(s) 18, 100, 537
SspDI GGCGCC 1 cut(s) 595
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 123
StyD4I CCNGG 3 cut(s) 205, 219, 224
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 1 cut(s) 251
TasI AATT 4 cut(s) 25, 66, 77, 150
TatI WGTACW 1 cut(s) 163
TauI GCSGC 2 cut(s) 21, 103
Tru1I TTAA 2 cut(s) 390, 524
Tru9I TTAA 2 cut(s) 390, 524
TscAI CASTG 5 cut(s) 37, 319, 367, 481, 489
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 5 cut(s) 37, 319, 367, 481, 489
XapI RAATTY 4 cut(s) 25, 66, 77, 150
XceI RCATGY 1 cut(s) 468
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.