Rw6G009930

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0020588
Physical Location & Seq
Reverse (-)
16828316 .. 16829288
973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009930.1

Sequence Viewer

Length: 381 bp
ATGGGGTGGGCCTGTGGCGGCCCAAATTCCAGTGCAACCGGAAATGGTTCAAGCAAGACTTCTGGAATTCCTCCTGAATTTCATGACCATCTCACGAGGCGGCGACAACTACTATGGCAAGGTAGAGAAAAGGCATCGGATATTATAAAAATTTGTATGTCTGTACTAGAGTTTGAGGCATCACGAGATGGCCTTTTCCGGTCTCTGGGAGAGATCTACCCGGCCAGGTCTGGTGGCACTGAACAAGAATGGAAGCTTGCACAGAGCACAATGGAAACTGCTTCCAGTGGATTGTCTTCTGCAACCAACGAACTTAATATTGCATCTCTCAAAGCAAAGTCAGCTTCAGGCTCCAACGGTGTTTGGAGTAATCTCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

126

Amino Acids

13.45

Weight (kDa)

7.81

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020588)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0260201
rosa_samantha Rh6AG112000 Rh6BG105400 Rh6CG100000 Rh6DG092600
rosa_wichuraiana Rw6G009930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AciI CCGC 2 cut(s) 18, 100
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 4 cut(s) 25, 66, 77, 150
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 1 cut(s) 51
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 256, 344
AluI AGCT 2 cut(s) 256, 344
Alw21I GWGCWC 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 4 cut(s) 9, 19, 190, 222
ApoI RAATTY 4 cut(s) 25, 66, 77, 150
Asp700I GAANNNNTTC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 9, 20
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 367
BauI CACGAG 2 cut(s) 94, 183
BbsI GAAGAC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 269
BccI CCATC 2 cut(s) 96, 182
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 2 cut(s) 167, 379
BglII AGATCT 1 cut(s) 213
BisI GCNGC 2 cut(s) 19, 101
BlsI GCNGC 2 cut(s) 20, 102
Bme1390I CCNGG 2 cut(s) 221, 226
BmgT120I GGNCC 2 cut(s) 9, 20
BmiI GGNNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 221, 226
BmsI GCATC 3 cut(s) 143, 188, 332
BpiI GAAGAC 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 207
BsaWI WCCGGW 2 cut(s) 38, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 30, 285
BseBI CCWGG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 205
BseNI ACTGG 2 cut(s) 30, 285
BshFI GGCC 4 cut(s) 11, 21, 192, 224
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 3 cut(s) 39, 199, 221
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 207
BsnI GGCC 4 cut(s) 11, 21, 192, 224
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 1 cut(s) 213
BspACI CCGC 2 cut(s) 18, 100
BspANI GGCC 4 cut(s) 11, 21, 192, 224
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 207
BsrI ACTGG 2 cut(s) 30, 285
BssMI GATC 1 cut(s) 213
BssSI CACGAG 2 cut(s) 94, 183
Bst2BI CACGAG 2 cut(s) 94, 183
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 258
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 219, 224
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 4 cut(s) 11, 21, 192, 224
BtsIMutI CAGTG 3 cut(s) 37, 237, 292
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 9, 20
Csp6I GTAC 1 cut(s) 164
CviAII CATG 1 cut(s) 83
CviJI RGCY 7 cut(s) 11, 21, 192, 224, 256, 344, 351
CviKI_1 RGCY 7 cut(s) 11, 21, 192, 224, 256, 344, 351
CviQI GTAC 1 cut(s) 164
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 222
Eco31I GGTCTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 330
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 86
FaiI YATR 4 cut(s) 84, 115, 146, 158
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 19, 101
Fsp4HI GCNGC 2 cut(s) 19, 101
FspBI CTAG 2 cut(s) 167, 379
GluI GCNGC 2 cut(s) 19, 101
HaeIII GGCC 4 cut(s) 11, 21, 192, 224
HapII CCGG 3 cut(s) 39, 199, 221
Hin1II CATG 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 254
HpaII CCGG 3 cut(s) 39, 199, 221
HphI GGTGA 1 cut(s) 367
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 5 cut(s) 63, 74, 83, 94, 183
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 4 cut(s) 35, 260, 302, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 213
LmnI GCTCC 1 cut(s) 356
LweI GCATC 3 cut(s) 143, 188, 332
MaeI CTAG 2 cut(s) 167, 379
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 1 cut(s) 288
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 4 cut(s) 25, 66, 77, 150
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 3 cut(s) 81, 90, 169
MroXI GAANNNNTTC 1 cut(s) 46
MseI TTAA 1 cut(s) 315
MspI CCGG 3 cut(s) 39, 199, 221
MspR9I CCNGG 2 cut(s) 221, 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 221
NdeII GATC 1 cut(s) 213
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 352
PagI TCATGA 1 cut(s) 82
PdmI GAANNNNTTC 1 cut(s) 46
PkrI GCNGC 2 cut(s) 20, 102
PsiI TTATAA 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 352
PspPI GGNCC 2 cut(s) 9, 20
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 2 cut(s) 19, 101
Sau3AI GATC 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 9, 20
ScrFI CCNGG 2 cut(s) 221, 226
SduI GDGCHC 1 cut(s) 269
SetI ASST 5 cut(s) 124, 230, 258, 346, 380
SfaNI GCATC 3 cut(s) 143, 188, 332
Sse9I AATT 4 cut(s) 25, 66, 77, 150
SsiI CCGC 2 cut(s) 18, 100
SspI AATATT 1 cut(s) 319
SspMI CTAG 2 cut(s) 167, 379
StyD4I CCNGG 2 cut(s) 219, 224
TaaI ACNGT 1 cut(s) 359
TasI AATT 4 cut(s) 25, 66, 77, 150
TatI WGTACW 1 cut(s) 163
TauI GCSGC 2 cut(s) 21, 103
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 3 cut(s) 37, 244, 292
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 3 cut(s) 37, 244, 292
XapI RAATTY 4 cut(s) 25, 66, 77, 150
XmnI GAANNNNTTC 1 cut(s) 46
XspI CTAG 2 cut(s) 167, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.