Rh6BG105400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0020588
Physical Location & Seq
Forward (+)
16199133 .. 16211282
12150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG105400.1

Sequence Viewer

Length: 684 bp
ATGGGGTGGGCCTGTGGCGGCCCAAATTCCAGTGCAACTGGAAATGGTTCAAGCAAGACTTCTGGAATTCGTCCTGAATTTCATGACCATCTCACGAGGCGGCGACAACTACTATGGCAAGGTAGAGAAAAGGCATCGGATATTATAAAAATTTGTATGTCTGTACTGGAGTTTGAGGCATCACGAGATGGCCTTTTCCGGTCTCCGGGAGAGATCTACCCGGCCAGGTCTGGTGGTGATTGTAGAACGTGGCAGCAAGCTTACTTGAATGCACTAAAAAGATTGGATATCACTTACCACTCTTTTGCTCGCACTGAACAAGAATGGAAGCTTGCACAGAGCACAATGGAAACTGCTTCCAGTGGATTGTCTTCTGCAACCAACGAACTTAATATTGCATCTCTCAAAGCAAAGTCAGCTTCAGGTGATTTACAGAGCACGGTTCTTGCAATGAGGGATTGTGCATGTGAAGCCAGTGTCGCACTGATGGCATATGCTGGTGTTTCAAATCGTCATTCTACTTTAACTTCTGAATGTGGTTTTATGCTTGAAGAGGTCCTTGCAATAACTGAAGATCTACATGATGTTCACAGTCTAGGAAAGGAGGCTGCTGCAGTTCATCGTTCTCTTGTGGAAGACCTTTCAAAGAATCACTTCCTCCACGGGTCTTTTCAACTAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

227

Amino Acids

24.8

Weight (kDa)

6.3

Isoelectric Point (pI)

55.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020588)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0260201
rosa_samantha Rh6AG112000 Rh6BG105400 Rh6CG100000 Rh6DG092600
rosa_wichuraiana Rw6G009930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 146
AciI CCGC 2 cut(s) 18, 100
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 4 cut(s) 25, 66, 77, 150
AcuI CTGAAG 2 cut(s) 405, 591
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 6 cut(s) 51, 268, 507, 551, 645, 674
AjnI CCWGG 1 cut(s) 224
AluBI AGCT 3 cut(s) 260, 331, 419
AluI AGCT 3 cut(s) 260, 331, 419
Alw21I GWGCWC 2 cut(s) 344, 440
Alw26I GTCTC 1 cut(s) 207
AoxI GGCC 4 cut(s) 9, 19, 190, 222
ApeKI GCWGC 3 cut(s) 253, 608, 611
ApoI RAATTY 4 cut(s) 25, 66, 77, 150
Asp700I GAANNNNTTC 2 cut(s) 46, 653
AspS9I GGNCC 3 cut(s) 9, 20, 556
AsuC2I CCSGG 2 cut(s) 207, 221
AsuHPI GGTGA 2 cut(s) 248, 437
AvaII GGWCC 1 cut(s) 556
BauI CACGAG 2 cut(s) 94, 183
BbsI GAAGAC 2 cut(s) 363, 642
Bbv12I GWGCWC 2 cut(s) 344, 440
BbvI GCAGC 3 cut(s) 265, 595, 598
BccI CCATC 3 cut(s) 96, 182, 481
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 2 cut(s) 207, 221
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 1 cut(s) 596
BfmI CTRYAG 1 cut(s) 612
BglII AGATCT 2 cut(s) 213, 574
BisI GCNGC 5 cut(s) 19, 101, 254, 609, 612
BlsI GCNGC 5 cut(s) 20, 102, 255, 610, 613
Bme1390I CCNGG 3 cut(s) 207, 221, 226
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 3 cut(s) 9, 20, 556
BmrFI CCNGG 3 cut(s) 207, 221, 226
BmsI GCATC 3 cut(s) 143, 188, 407
BpiI GAAGAC 2 cut(s) 363, 642
BpmI CTGGAG 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 207, 221
BsaI GGTCTC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 661
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 5 cut(s) 30, 43, 171, 360, 474
Bse3DI GCAATG 1 cut(s) 456
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 661
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 456
BseNI ACTGG 5 cut(s) 30, 43, 171, 360, 474
BseXI GCAGC 3 cut(s) 265, 595, 598
BshFI GGCC 4 cut(s) 11, 21, 192, 224
BsiHKAI GWGCWC 2 cut(s) 344, 440
BsiSI CCGG 3 cut(s) 199, 206, 221
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 207
BsmI GAATGC 1 cut(s) 274
BsnI GGCC 4 cut(s) 11, 21, 192, 224
Bso31I GGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 344, 440
Bsp143I GATC 2 cut(s) 213, 574
BspACI CCGC 2 cut(s) 18, 100
BspANI GGCC 4 cut(s) 11, 21, 192, 224
BspHI TCATGA 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 616
BspTNI GGTCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 456
BsrI ACTGG 5 cut(s) 30, 43, 171, 360, 474
BssECI CCNNGG 1 cut(s) 661
BssMI GATC 2 cut(s) 213, 574
BssSI CACGAG 2 cut(s) 94, 183
Bst2BI CACGAG 2 cut(s) 94, 183
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 2 cut(s) 442, 593
Bst6I CTCTTC 1 cut(s) 546
BstC8I GCNNGC 3 cut(s) 258, 310, 333
BstDSI CCRYGG 1 cut(s) 661
BstKTI GATC 2 cut(s) 216, 577
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 2 cut(s) 213, 574
BstMWI GCNNNNNNNGC 4 cut(s) 416, 470, 479, 488
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 3 cut(s) 205, 219, 224
BstSFI CTRYAG 1 cut(s) 612
BstV1I GCAGC 3 cut(s) 265, 595, 598
BstV2I GAAGAC 2 cut(s) 363, 642
BstX2I RGATCY 2 cut(s) 213, 574
BstYI RGATCY 2 cut(s) 213, 574
BsuRI GGCC 4 cut(s) 11, 21, 192, 224
BtgI CCRYGG 1 cut(s) 661
BtsIMutI CAGTG 5 cut(s) 37, 312, 367, 481, 482
Cac8I GCNNGC 3 cut(s) 258, 310, 333
CciI TCATGA 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 9, 20, 556
Csp6I GTAC 1 cut(s) 164
CviAII CATG 3 cut(s) 83, 465, 581
CviJI RGCY 9 cut(s) 11, 21, 192, 224, 260, 331, 419, 473, 608
CviKI_1 RGCY 9 cut(s) 11, 21, 192, 224, 260, 331, 419, 473, 608
CviQI GTAC 1 cut(s) 164
DpnI GATC 2 cut(s) 215, 576
DpnII GATC 2 cut(s) 213, 574
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 546
EarI CTCTTC 1 cut(s) 546
Eco31I GGTCTC 1 cut(s) 207
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 2 cut(s) 405, 591
EcoO109I RGGNCCY 1 cut(s) 556
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 224
EcoRV GATATC 1 cut(s) 289
FaeI CATG 3 cut(s) 86, 468, 584
FaiI YATR 9 cut(s) 84, 115, 146, 158, 466, 493, 495, 545, 582
FalI AAGNNNNNCTT 6 cut(s) 43, 75, 543, 575, 638, 670
FatI CATG 3 cut(s) 82, 464, 580
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 5 cut(s) 19, 101, 254, 609, 612
Fsp4HI GCNGC 5 cut(s) 19, 101, 254, 609, 612
FspBI CTAG 1 cut(s) 596
GluI GCNGC 5 cut(s) 19, 101, 254, 609, 612
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 4 cut(s) 11, 21, 192, 224
HapII CCGG 3 cut(s) 199, 206, 221
Hin1II CATG 3 cut(s) 86, 468, 584
HindIII AAGCTT 2 cut(s) 258, 329
HinfI GANTC 1 cut(s) 649
HpaII CCGG 3 cut(s) 199, 206, 221
HphI GGTGA 2 cut(s) 248, 437
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 139, 532
Hpy188III TCNNGA 5 cut(s) 63, 74, 83, 94, 183
Hpy8I GTNNAC 1 cut(s) 589
HpyCH4III ACNGT 2 cut(s) 442, 593
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 9 cut(s) 35, 272, 335, 377, 398, 449, 464, 563, 614
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 470, 479, 488
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 3 cut(s) 86, 468, 584
Kzo9I GATC 2 cut(s) 213, 574
Lsp1109I GCAGC 3 cut(s) 265, 595, 598
LweI GCATC 3 cut(s) 143, 188, 407
MaeI CTAG 1 cut(s) 596
MaeII ACGT 1 cut(s) 248
MalI GATC 2 cut(s) 215, 576
MboI GATC 2 cut(s) 213, 574
MboII GAAGA 4 cut(s) 363, 563, 584, 647
MflI RGATCY 2 cut(s) 213, 574
MhlI GDGCHC 2 cut(s) 344, 440
MluCI AATT 4 cut(s) 25, 66, 77, 150
MnlI CCTC 6 cut(s) 90, 169, 447, 547, 598, 668
MroXI GAANNNNTTC 2 cut(s) 46, 653
MseI TTAA 2 cut(s) 390, 524
MspI CCGG 3 cut(s) 199, 206, 221
MspR9I CCNGG 3 cut(s) 207, 221, 226
Mva1269I GAATGC 1 cut(s) 274
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 4 cut(s) 416, 470, 479, 488
NciI CCSGG 2 cut(s) 207, 221
NdeI CATATG 1 cut(s) 493
NdeII GATC 2 cut(s) 213, 574
NlaIII CATG 3 cut(s) 86, 468, 584
NspI RCATGY 1 cut(s) 468
PagI TCATGA 1 cut(s) 82
PctI GAATGC 1 cut(s) 274
PdmI GAANNNNTTC 2 cut(s) 46, 653
PfeI GAWTC 1 cut(s) 649
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 5 cut(s) 20, 102, 255, 610, 613
PpuMI RGGWCCY 1 cut(s) 556
PsiI TTATAA 1 cut(s) 146
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspPI GGNCC 3 cut(s) 9, 20, 556
PspPPI RGGWCCY 1 cut(s) 556
PstI CTGCAG 1 cut(s) 616
PsuI RGATCY 2 cut(s) 213, 574
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 390, 524
SatI GCNGC 5 cut(s) 19, 101, 254, 609, 612
Sau3AI GATC 2 cut(s) 213, 574
Sau96I GGNCC 3 cut(s) 9, 20, 556
ScrFI CCNGG 3 cut(s) 207, 221, 226
SduI GDGCHC 2 cut(s) 344, 440
SetI ASST 9 cut(s) 124, 230, 251, 262, 333, 421, 427, 558, 642
SfaNI GCATC 3 cut(s) 143, 188, 407
SfcI CTRYAG 1 cut(s) 612
SinI GGWCC 1 cut(s) 556
Sse9I AATT 4 cut(s) 25, 66, 77, 150
SsiI CCGC 2 cut(s) 18, 100
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 596
StyD4I CCNGG 3 cut(s) 205, 219, 224
TaaI ACNGT 2 cut(s) 442, 593
TaiI ACGT 1 cut(s) 251
TasI AATT 4 cut(s) 25, 66, 77, 150
TatI WGTACW 1 cut(s) 163
TauI GCSGC 2 cut(s) 21, 103
TfiI GAWTC 1 cut(s) 649
Tru1I TTAA 2 cut(s) 390, 524
Tru9I TTAA 2 cut(s) 390, 524
TscAI CASTG 5 cut(s) 37, 319, 367, 481, 489
TseI GCWGC 3 cut(s) 253, 608, 611
TspDTI ATGAA 2 cut(s) 71, 608
TspRI CASTG 5 cut(s) 37, 319, 367, 481, 489
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 4 cut(s) 25, 66, 77, 150
XceI RCATGY 1 cut(s) 468
XmnI GAANNNNTTC 2 cut(s) 46, 653
XspI CTAG 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.