Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012712

Physical Location & Seq

Genomic Coordinates Forward (+)

19144491 .. 19147949

Gene Structure 3459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGATAACCCTGATCCTTATCGTCCTAATGGAACAGGAAATGAATACTGGCAAAGTGGAGGGTACAAAACCAATGAGCACGTTATGAACATGCCTCCACCTTCTGCATTATCTGGTTGGACTAACACAGGAGCGCATCAGCCACCCATGATTAGCAGCGAGATGAACTCCTCCAACTTCTCAGGCCCTCATGGCCCTTTACAACCCCCTCCACATCCTTCAGTGGCTCTCGGGTTCAACACGAGCACTTTCACTTATGATGACTTAGCAGTTGCGACTTCAGGGTTCTCCCAGGCCAAATTGTTGGGTCAAGGTGGGTTCGGGTTTGTGCACAAAGGGGTGTTGCCAAATGGCAAAGAAATTGCTGTGAAAAGTCTTAAAGCAGGAAGTGGCCAAGGAGACCGAGAATTCGCAGCAGAGGTTGAGATTATTAGCCGTGTCCATCACCGCCACCTTGTCTCGCTTGTGGGATATTGCCTTAACGGAGACCGAAAATTGTTGGTTTATGAGTTTGTTCCAAATAACACCCTTGAGTTCCACCTTTATAGTAAGAATCGTCCACCATTGGATTGGGCCTCGAGGGTCAAGATTGCGTTAGGATCTGCTAAAGGACTTGCTTACTTGCACGAAGATTGTCATCCAAAGATTATCCACCGTGACATTAAAGCAGCAAATATTTTAATTGACCATCACTTTGAAGCTAAGGTGGCAGATTTTGGGCTAGCAAAGCTAAACCAAGAAAACGTCACTCATGTGTCTACTCGTGTCATGGGGACATTCGGGTACTTGGCTCCTGAATACGCATCGAGTGGCAAGTTGACTGAGAAGTCTGATGTTTTCTCATTTGGTATCATGCTTCTCGAGCTGATTACTGGACGACGCCCAGTGGACACCACTGGAGAATATGAGGAGGACACCTTAGTAGACTGGGCTAGGCCTTTGCTATTGAAAGCAATAGAGGATGGGAACTACAGTGAGTTAGCTGATCCACGACTAGAAAATAAGTATGATCAGGAAGAGATTGCACGCATGGTTGCATGTGCGTCAACAAGCGTTCGGCACTCTGCAAAAAAGCGACCCAGAATGAGCCAGATTGTACGAGCACTAGAAGGAGATGTGTCGCTAGAGGACTTGCATGAAGGAATAAAACCTAGTCCCAGTGCTTTATTTGGTGGCTCTAATACTAGTTCTGAGTTTGATTCCGACTCATATAATGCTAACATGAAGAATTTTAGAAAGACGACATTGGGGGAAAGCCAAGACTATCCAAGCAGCGAATATGGGAACACCTCTAATAGCGAAGAGATGGTCAAGAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

440

Amino Acids

48.42

Weight (kDa)

5.95

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	97 - 302	5e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	99 - 369	4.3e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49270 AT3G18810 AT4G34440 AT4G34440
fragaria_vesca	FvH4_2g08640
malus_domestica	MD05G1067600.v1.1 MD10G1077600.v1.1
prunus_persica	Prupe.8G098300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0264041
rosa_laevigata	RLG00000014294
rosa_roxburghii	Rroxscaffold_176G00431380 Rroxscaffold_7G00203640
rosa_rugosa	Rorug06G0007400 Rorug06G0007500
rosa_samantha	Rh6AG128700 Rh6CG123900 Rh6DG110700
rosa_wichuraiana	Rw6G011120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	826
AbsI	CCTCGAGG	1 cut(s)	577
AccI	GTMKAC	2 cut(s)	758, 924
AciI	CCGC	1 cut(s)	448
AclWI	GGATC	3 cut(s)	8, 607, 980
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	407, 1228
AcuI	CTGAAG	2 cut(s)	204, 264
AcyI	GRCGYC	1 cut(s)	880
AfaI	GTAC	3 cut(s)	65, 785, 1098
AgsI	TTSAA	3 cut(s)	238, 698, 949
AhlI	ACTAGT	1 cut(s)	1184
AjnI	CCWGG	1 cut(s)	291
AleI	CACNNNNGTG	1 cut(s)	752
AluBI	AGCT	4 cut(s)	701, 730, 865, 983
AluI	AGCT	4 cut(s)	701, 730, 865, 983
Alw21I	GWGCWC	4 cut(s)	81, 248, 333, 1105
Alw26I	GTCTC	3 cut(s)	393, 463, 480
Alw44I	GTGCAC	1 cut(s)	329
AlwI	GGATC	3 cut(s)	8, 607, 980
Ama87I	CYCGRG	3 cut(s)	230, 577, 860
AoxI	GGCC	6 cut(s)	184, 193, 294, 391, 573, 935
ApaLI	GTGCAC	1 cut(s)	329
ApeKI	GCWGC	4 cut(s)	156, 413, 668, 1272
ApoI	RAATTY	2 cut(s)	407, 1228
ArsI	GACNNNNNNTTYG	5 cut(s)	392, 424, 677, 709, 1293
AspLEI	GCGC	1 cut(s)	136
AspS9I	GGNCC	3 cut(s)	185, 194, 573
AsuHPI	GGTGA	1 cut(s)	437
AsuNHI	GCTAGC	1 cut(s)	721
AvaI	CYCGRG	3 cut(s)	230, 577, 860
BaeGI	GKGCMC	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	393
BauI	CACGAG	2 cut(s)	241, 762
Bbv12I	GWGCWC	4 cut(s)	81, 248, 333, 1105
BbvI	GCAGC	4 cut(s)	168, 425, 680, 1284
BccI	CCATC	4 cut(s)	450, 696, 956, 1300
BceAI	ACGGC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	1 cut(s)	1009
BcoDI	GTCTC	3 cut(s)	393, 463, 480
BcuI	ACTAGT	1 cut(s)	1184
BfaI	CTAG	7 cut(s)	722, 933, 995, 1106, 1124, 1152, 1185
BfmI	CTRYAG	1 cut(s)	970
BglI	GCCNNNNNGGC	1 cut(s)	192
BisI	GCNGC	4 cut(s)	157, 414, 669, 1273
BlsI	GCNGC	4 cut(s)	158, 415, 670, 1274
Bme1390I	CCNGG	1 cut(s)	293
BmeT110I	CYCGRG	3 cut(s)	230, 577, 860
BmgT120I	GGNCC	3 cut(s)	185, 194, 573
BmiI	GGNNCC	1 cut(s)	792
BmrFI	CCNGG	1 cut(s)	293
BmrI	ACTGGG	3 cut(s)	878, 937, 1152
BmsI	GCATC	2 cut(s)	145, 812
BmtI	GCTAGC	1 cut(s)	725
BmuI	ACTGGG	3 cut(s)	878, 937, 1152
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BpmI	CTGGAG	1 cut(s)	918
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	1 cut(s)	551
BsaBI	GATNNNNATC	2 cut(s)	18, 636
BsaHI	GRCGYC	1 cut(s)	880
BsaI	GGTCTC	2 cut(s)	393, 480
BsaJI	CCNNGG	2 cut(s)	291, 394
Bse1I	ACTGG	6 cut(s)	53, 877, 884, 901, 932, 1158
Bse8I	GATNNNNATC	2 cut(s)	18, 636
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	291, 394
BseGI	GGATG	3 cut(s)	214, 637, 967
BseJI	GATNNNNATC	2 cut(s)	18, 636
BseMII	CTCAG	3 cut(s)	195, 813, 1182
BseNI	ACTGG	6 cut(s)	53, 877, 884, 901, 932, 1158
BseRI	GAGGAG	2 cut(s)	160, 923
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	4 cut(s)	168, 425, 680, 1284
BshFI	GGCC	6 cut(s)	186, 195, 296, 393, 575, 937
BsiHKAI	GWGCWC	4 cut(s)	81, 248, 333, 1105
BsiHKCI	CYCGRG	3 cut(s)	230, 577, 860
BslFI	GGGAC	2 cut(s)	787, 1140
BsmAI	GTCTC	3 cut(s)	393, 463, 480
BsmFI	GGGAC	2 cut(s)	787, 1140
BsnI	GGCC	6 cut(s)	186, 195, 296, 393, 575, 937
Bso31I	GGTCTC	2 cut(s)	393, 480
BsoBI	CYCGRG	3 cut(s)	230, 577, 860
Bsp1286I	GDGCHC	4 cut(s)	81, 248, 333, 1105
Bsp143I	GATC	4 cut(s)	13, 599, 985, 1009
BspACI	CCGC	1 cut(s)	448
BspANI	GGCC	6 cut(s)	186, 195, 296, 393, 575, 937
BspCNI	CTCAG	3 cut(s)	194, 814, 1183
BspLI	GGNNCC	1 cut(s)	792
BspOI	GCTAGC	1 cut(s)	725
BspPI	GGATC	3 cut(s)	8, 607, 980
BspTNI	GGTCTC	2 cut(s)	393, 480
BsrI	ACTGG	6 cut(s)	53, 877, 884, 901, 932, 1158
BssECI	CCNNGG	2 cut(s)	291, 394
BssMI	GATC	4 cut(s)	13, 599, 985, 1009
BssNI	GRCGYC	1 cut(s)	880
BssSI	CACGAG	2 cut(s)	241, 762
BssT1I	CCWWGG	1 cut(s)	394
Bst2BI	CACGAG	2 cut(s)	241, 762
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	2 cut(s)	656, 974
Bst6I	CTCTTC	2 cut(s)	1011, 1296
BstACI	GRCGYC	1 cut(s)	880
BstC8I	GCNNGC	2 cut(s)	723, 1027
BstDEI	CTNAG	6 cut(s)	181, 265, 702, 822, 919, 1191
BstF5I	GGATG	3 cut(s)	214, 637, 967
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	16, 602, 988, 1012
BstMAI	GTCTC	3 cut(s)	393, 463, 480
BstMBI	GATC	4 cut(s)	13, 599, 985, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	192, 707, 727, 862
BstNI	CCWGG	1 cut(s)	293
BstNSI	RCATGY	2 cut(s)	94, 1041
BstSCI	CCNGG	1 cut(s)	291
BstSFI	CTRYAG	1 cut(s)	970
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	168, 425, 680, 1284
BstX2I	RGATCY	1 cut(s)	599
BstXI	CCANNNNNNTGG	2 cut(s)	304, 570
BstYI	RGATCY	1 cut(s)	599
BsuRI	GGCC	6 cut(s)	186, 195, 296, 393, 575, 937
BtsCI	GGATG	3 cut(s)	214, 637, 967
BtsIMutI	CAGTG	5 cut(s)	228, 891, 894, 979, 1165
Cac8I	GCNNGC	2 cut(s)	723, 1027
CfoI	GCGC	1 cut(s)	136
Cfr13I	GGNCC	2 cut(s)	185, 194
CseI	GACGC	2 cut(s)	888, 1032
Csp6I	GTAC	3 cut(s)	64, 784, 1097
CviQI	GTAC	3 cut(s)	64, 784, 1097
DdeI	CTNAG	6 cut(s)	181, 265, 702, 822, 919, 1191
DpnI	GATC	4 cut(s)	15, 601, 987, 1011
DpnII	GATC	4 cut(s)	13, 599, 985, 1009
DrdI	GACNNNNNNGTC	1 cut(s)	826
DseDI	GACNNNNNNGTC	1 cut(s)	826
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	2 cut(s)	1011, 1296
EarI	CTCTTC	2 cut(s)	1011, 1296
Eco130I	CCWWGG	1 cut(s)	394
Eco147I	AGGCCT	1 cut(s)	937
Eco31I	GGTCTC	2 cut(s)	393, 480
Eco57I	CTGAAG	2 cut(s)	204, 264
Eco88I	CYCGRG	3 cut(s)	230, 577, 860
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaqI	GGGAC	2 cut(s)	787, 1140
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	2 cut(s)	758, 924
Fnu4HI	GCNGC	4 cut(s)	157, 414, 669, 1273
FokI	GGATG	3 cut(s)	201, 624, 974
Fsp4HI	GCNGC	4 cut(s)	157, 414, 669, 1273
FspBI	CTAG	7 cut(s)	722, 933, 995, 1106, 1124, 1152, 1185
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	4 cut(s)	157, 414, 669, 1273
GsuI	CTGGAG	1 cut(s)	918
HaeIII	GGCC	6 cut(s)	186, 195, 296, 393, 575, 937
HgaI	GACGC	2 cut(s)	888, 1032
HhaI	GCGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	880
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HincII	GTYRAC	2 cut(s)	819, 1047
HindII	GTYRAC	2 cut(s)	819, 1047
HinfI	GANTC	3 cut(s)	553, 1199, 1205
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	7 cut(s)	331, 560, 759, 819, 889, 925, 1047
Hpy188I	TCNGA	3 cut(s)	832, 1192, 1204
Hpy188III	TCNNGA	5 cut(s)	586, 794, 860, 1013, 1312
Hpy8I	GTNNAC	7 cut(s)	331, 560, 759, 819, 889, 925, 1047
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	4 cut(s)	111, 228, 1103, 1133
HpyCH4III	ACNGT	2 cut(s)	656, 974
HpyCH4IV	ACGT	2 cut(s)	81, 744
HpyCH4V	TGCA	7 cut(s)	107, 331, 625, 1025, 1037, 1067, 1135
HpyF10VI	GCNNNNNNNGC	4 cut(s)	192, 707, 727, 862
HpyF3I	CTNAG	6 cut(s)	181, 265, 702, 822, 919, 1191
HpySE526I	ACGT	2 cut(s)	81, 744
Hsp92I	GRCGYC	1 cut(s)	880
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	4 cut(s)	13, 599, 985, 1009
LmnI	GCTCC	2 cut(s)	131, 796
Lsp1109I	GCAGC	4 cut(s)	168, 425, 680, 1284
LweI	GCATC	2 cut(s)	145, 812
MaeI	CTAG	7 cut(s)	722, 933, 995, 1106, 1124, 1152, 1185
MaeII	ACGT	2 cut(s)	81, 744
MaeIII	GTNAC	2 cut(s)	656, 745
MalI	GATC	4 cut(s)	15, 601, 987, 1011
MboI	GATC	4 cut(s)	13, 599, 985, 1009
MboII	GAAGA	4 cut(s)	641, 1028, 1237, 1313
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	4 cut(s)	81, 248, 333, 1105
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	6 cut(s)	299, 360, 407, 494, 681, 1228
MluNI	TGGCCA	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	1199
MmeI	TCCRAC	3 cut(s)	98, 198, 1227
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	4 cut(s)	378, 480, 663, 680
MslI	CAYNNNNRTG	1 cut(s)	752
Msp20I	TGGCCA	1 cut(s)	393
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	4 cut(s)	192, 707, 727, 862
NdeII	GATC	4 cut(s)	13, 599, 985, 1009
NheI	GCTAGC	1 cut(s)	721
NlaIV	GGNNCC	1 cut(s)	792
NmuCI	GTSAC	2 cut(s)	656, 745
NspI	RCATGY	2 cut(s)	94, 1041
OliI	CACNNNNGTG	1 cut(s)	752
PaeR7I	CTCGAG	2 cut(s)	577, 860
PceI	AGGCCT	1 cut(s)	937
PfeI	GAWTC	2 cut(s)	553, 1199
PkrI	GCNGC	4 cut(s)	158, 415, 670, 1274
PleI	GAGTC	1 cut(s)	1199
PpsI	GAGTC	1 cut(s)	1199
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	1 cut(s)	792
PspPI	GGNCC	3 cut(s)	185, 194, 573
PspXI	VCTCGAGB	1 cut(s)	577
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	3 cut(s)	65, 785, 1098
RsaNI	GTAC	3 cut(s)	64, 784, 1097
RseI	CAYNNNNRTG	1 cut(s)	752
SaqAI	TTAA	4 cut(s)	378, 480, 663, 680
SatI	GCNGC	4 cut(s)	157, 414, 669, 1273
Sau3AI	GATC	4 cut(s)	13, 599, 985, 1009
Sau96I	GGNCC	3 cut(s)	185, 194, 573
SchI	GAGTC	1 cut(s)	1199
ScrFI	CCNGG	1 cut(s)	293
SduI	GDGCHC	4 cut(s)	81, 248, 333, 1105
SfaNI	GCATC	2 cut(s)	145, 812
SfcI	CTRYAG	1 cut(s)	970
SfiI	GGCCNNNNNGGCC	1 cut(s)	192
Sfr274I	CTCGAG	2 cut(s)	577, 860
SlaI	CTCGAG	2 cut(s)	577, 860
SmiMI	CAYNNNNRTG	1 cut(s)	752
SmlI	CTYRAG	3 cut(s)	530, 577, 860
SmoI	CTYRAG	3 cut(s)	530, 577, 860
SpeI	ACTAGT	1 cut(s)	1184
Sse9I	AATT	6 cut(s)	299, 360, 407, 494, 681, 1228
SseBI	AGGCCT	1 cut(s)	937
SsiI	CCGC	1 cut(s)	448
SspI	AATATT	1 cut(s)	676
SspMI	CTAG	7 cut(s)	722, 933, 995, 1106, 1124, 1152, 1185
StuI	AGGCCT	1 cut(s)	937
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	656, 974
TaiI	ACGT	2 cut(s)	84, 747
TaqI	TCGA	3 cut(s)	578, 806, 861
TaqII	GACCGA	2 cut(s)	417, 504
TasI	AATT	6 cut(s)	299, 360, 407, 494, 681, 1228
TfiI	GAWTC	2 cut(s)	553, 1199
Tru1I	TTAA	4 cut(s)	378, 480, 663, 680
Tru9I	TTAA	4 cut(s)	378, 480, 663, 680
TscAI	CASTG	5 cut(s)	228, 891, 901, 979, 1165
TseFI	GTSAC	2 cut(s)	656, 745
TseI	GCWGC	4 cut(s)	156, 413, 668, 1272
Tsp45I	GTSAC	2 cut(s)	656, 745
TspDTI	ATGAA	5 cut(s)	57, 101, 179, 1152, 1238
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	5 cut(s)	228, 891, 901, 979, 1165
VneI	GTGCAC	1 cut(s)	329
XapI	RAATTY	2 cut(s)	407, 1228
XceI	RCATGY	2 cut(s)	94, 1041
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XhoI	CTCGAG	2 cut(s)	577, 860
XmiI	GTMKAC	2 cut(s)	758, 924
XspI	CTAG	7 cut(s)	722, 933, 995, 1106, 1124, 1152, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.