Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0012712

Physical Location & Seq

Genomic Coordinates Forward (+)

1021401 .. 1025300

Gene Structure 3900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2184 bp

ATGGCGCCTTCATCTAATGATTCGTCATCATCAAATTCTAAACAATCCTCATCAACTTCTCCATCATCATCATCGTCATCTTCGAGCTCAAACTCTACACCATCTAATCAAGGGAATGGTAACTCTGAAGGCAACAATAACAATTCTGGAGGTAATAGCAATAACAATTCTGGAGGAAACAACAACAATAACAACAACAATTCTAGTGGGAACAACAATGGAAACGACAACTCTAGTGGGAATGGTAACTCTGGAGACAACAATGGGAGCAAAGATTCAAGTGGGAAAAACAATTCGAGCGGGAACAACAATTCTGGGCAGAACAACAACAACAATTCTGGTCAGAACAACAACAACAATTCTGGACAGAATGACAATAACAATTCTGGACAGAGCAACAATTCTGGTCAGAATGGCAACAACAATTCTGGGCAAAATGGCAACAACAATTCTGGGCAAAATGGCAATAGCAACTCTGGACAAAACAACAACAACAACAACAGCCAGAACAACAATGGCAACCAAAATAACAACGGCAACCAGAACAAAAACAACTCTGGACAAAACAACAACAACAATGGCGGGAATGGTAACTCTCAATCATCCCAAGGGAATCATCCACCACCACCACCACCACCACCCAAATCGCCCAACAATTATTGGCATGCACCTCCACCACCGTCAAAAAAGTCCCCTCCAGCACCACCAGCTCTATCTAATACAGACAATAAATCATCGTCCAGCTCACCTTCCTCACCACTCATAATAGGACTTGCAGCTGGAGCAGGGCTGTTGTTTGTCCTGGTTTTGCTCTTTTTGGCATGTTCTAGAAGGAGGAAGAAGCGACAGTCCTCACACCTCATGGATAACCCTGATCCTTATCGTCCTAATGGAACAGGAAGTGAATACTGGCAAAGTGGAGCGTACAAACCCAATGAGCACGTTATGAACATGCCTCCACCTTCTGCATTATCTGGTTGGACTAACACAGGAGCGCATCAGCCACCCATGATTAGCAGCGAGATGAACTCCTCCAACTTCTCAGGCCCTCATGGCCCTTTACAACCCCCTCCACACCCTTCAGTGGCTCTTGGATTCAACACGAGCACTTTCACATATGATGACTTAGCAGTTGCGACTTCAGGGTTCTCCCAGGCCAAATTGTTGGGTCAAGGTGGGTTCGGGTTTGTGCACAAAGGGGTGCTGCCAAATGGTAAAGAAATTGCTGTGAAAAGTCTCAAAGCAGGAAGTGGCCAAGGAGACCGAGAATTCGCAGCAGAGGTTGAGATTATTAGCCGTGTCCATCACCGCCACCTTGTCTCGCTTGTGGGATATTGCCTTAACGGAGACCGAAAATTGTTGGTTTATGAGTTTGTTCCAAATAACACCCTTGAGTTCCACCTTCATAATAAGAATCGTCCACCATTGGACTGGGCCTCGAGGGTCAAGATTGCATTGGGATCTGCTAAAGGGCTTGCTTACTTGCACGAAGATTGTCATCCAAAGATCATCCATCGTGACATTAAAGCAGCAAATATTTTAATTGACCATCACTTTGAAGCTAAGGTGGCAGATTTTGGGCTAGCAAAGCTAAACCAAGAAAACGTTACTCATGTGTCTACTCGTGTCATGGGGACATTCGGGTACTTGGCTCCTGAATACGCATCGAGTGGCAAGTTGACTGAGAAGTCTGATGTTTTCTCATTTGGTATCATGCTTCTCGAGCTGATTACTGGACGACGTCCAGTGGACACCACTGGAGAATATGAGGAGGACACCTTAGTAGACTGGGCTAGGCCTTTGCTATTGAAAGCAATAGAGGATGGGAACTACAGTGAGTTAGCTGATCCACGACTAGAAAATAAGTATGATCAGGAAGAGATTGCACGCATGGTTGCATGTGCGTCAACAAGCGTTCGGCATTCTGCAAAAAAGCGACCCAAAATGAGCCAGATTGTACGAGCACTAGAAGGAGATGTGTCGCTAGAGGACTTGCATGAAGGAATAAAACCTAGTCCCAGCGCTTTATTTGGTGGCTCTAATACTAGTTCTGAGTTTGATTCCGACTCATATAATGCTAACATGAAGAATTTTAGAAAGACGACATTGGGGGAAAGCCAAGACTATCCAAGCAGCGAATATGGGAACACCTCTAATAGCGAAGAGATGGTCAAGAAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

727

Amino Acids

77.35

Weight (kDa)

6.73

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	384 - 589	9.6e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	386 - 656	3.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49270 AT3G18810 AT4G34440 AT4G34440
fragaria_vesca	FvH4_2g08640
malus_domestica	MD05G1067600.v1.1 MD10G1077600.v1.1
prunus_persica	Prupe.8G098300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0264041
rosa_laevigata	RLG00000014294
rosa_roxburghii	Rroxscaffold_176G00431380 Rroxscaffold_7G00203640
rosa_rugosa	Rorug06G0007400 Rorug06G0007500
rosa_samantha	Rh6AG128700 Rh6CG123900 Rh6DG110700
rosa_wichuraiana	Rw6G011120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1687
AatII	GACGTC	1 cut(s)	1744
AbsI	CCTCGAGG	1 cut(s)	1438
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	300
AccI	GTMKAC	2 cut(s)	1619, 1785
AciI	CCGC	3 cut(s)	300, 582, 1309
AclI	AACGTT	1 cut(s)	1605
AclWI	GGATC	3 cut(s)	869, 1468, 1841
AcoI	YGGCCR	1 cut(s)	1252
AcsI	RAATTY	3 cut(s)	34, 1268, 2089
AcuI	CTGAAG	3 cut(s)	147, 1065, 1125
AcyI	GRCGYC	2 cut(s)	5, 1741
AfaI	GTAC	3 cut(s)	926, 1646, 1959
AfeI	AGCGCT	1 cut(s)	2023
AfiI	CCNNNNNNNGG	1 cut(s)	1084
AgsI	TTSAA	4 cut(s)	279, 1099, 1559, 1810
AhlI	ACTAGT	1 cut(s)	2045
AjnI	CCWGG	2 cut(s)	801, 1152
AluBI	AGCT	8 cut(s)	87, 710, 744, 779, 1562, 1591, 1726, 1844
AluI	AGCT	8 cut(s)	87, 710, 744, 779, 1562, 1591, 1726, 1844
Alw21I	GWGCWC	5 cut(s)	89, 942, 1109, 1194, 1966
Alw26I	GTCTC	5 cut(s)	249, 1241, 1254, 1324, 1341
Alw44I	GTGCAC	1 cut(s)	1190
AlwI	GGATC	3 cut(s)	869, 1468, 1841
Ama87I	CYCGRG	2 cut(s)	1438, 1721
Aor51HI	AGCGCT	1 cut(s)	2023
AoxI	GGCC	6 cut(s)	1045, 1054, 1155, 1252, 1434, 1796
ApaLI	GTGCAC	1 cut(s)	1190
ApeKI	GCWGC	6 cut(s)	776, 1017, 1204, 1274, 1529, 2133
ApoI	RAATTY	3 cut(s)	34, 1268, 2089
ArsI	GACNNNNNNTTYG	5 cut(s)	1253, 1285, 1538, 1570, 2154
AspLEI	GCGC	3 cut(s)	7, 997, 2024
AspS9I	GGNCC	3 cut(s)	1046, 1055, 1434
AsuHPI	GGTGA	3 cut(s)	738, 747, 1298
AsuNHI	GCTAGC	1 cut(s)	1582
AvaI	CYCGRG	2 cut(s)	1438, 1721
BaeGI	GKGCMC	1 cut(s)	1194
BalI	TGGCCA	1 cut(s)	1254
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	89
BauI	CACGAG	2 cut(s)	1102, 1623
Bbv12I	GWGCWC	5 cut(s)	89, 942, 1109, 1194, 1966
BbvI	GCAGC	6 cut(s)	788, 1029, 1191, 1286, 1541, 2145
BccI	CCATC	7 cut(s)	70, 109, 1311, 1521, 1557, 1817, 2161
BceAI	ACGGC	2 cut(s)	550, 1281
BciT130I	CCWGG	2 cut(s)	803, 1154
BclI	TGATCA	1 cut(s)	1870
BcoDI	GTCTC	5 cut(s)	249, 1241, 1254, 1324, 1341
BcuI	ACTAGT	1 cut(s)	2045
BfmI	CTRYAG	1 cut(s)	1831
BfoI	RGCGCY	2 cut(s)	8, 2025
BglI	GCCNNNNNGGC	1 cut(s)	1053
BisI	GCNGC	6 cut(s)	777, 1018, 1205, 1275, 1530, 2134
BlsI	GCNGC	6 cut(s)	778, 1019, 1206, 1276, 1531, 2135
Bme1390I	CCNGG	2 cut(s)	803, 1154
BmeT110I	CYCGRG	2 cut(s)	1438, 1721
BmgT120I	GGNCC	3 cut(s)	1046, 1055, 1434
BmiI	GGNNCC	2 cut(s)	6, 1653
BmrFI	CCNGG	2 cut(s)	803, 1154
BmrI	ACTGGG	2 cut(s)	1441, 1798
BmsI	GCATC	2 cut(s)	1006, 1673
BmtI	GCTAGC	1 cut(s)	1586
BmuI	ACTGGG	2 cut(s)	1441, 1798
BplI	GAGNNNNNCTC	2 cut(s)	1013, 1045
BpmI	CTGGAG	6 cut(s)	168, 192, 273, 681, 801, 1779
Bpu10I	CCTNAGC	1 cut(s)	1563
BpuEI	CTTGAG	1 cut(s)	1412
BsaBI	GATNNNNATC	2 cut(s)	879, 1497
BsaHI	GRCGYC	2 cut(s)	5, 1741
BsaI	GGTCTC	2 cut(s)	1254, 1341
BsaJI	CCNNGG	3 cut(s)	607, 1152, 1255
Bsc4I	CCNNNNNNNGG	1 cut(s)	1084
Bse1I	ACTGG	6 cut(s)	914, 1436, 1738, 1745, 1762, 1793
Bse8I	GATNNNNATC	2 cut(s)	879, 1497
BseBI	CCWGG	2 cut(s)	803, 1154
BseDI	CCNNGG	3 cut(s)	607, 1152, 1255
BseGI	GGATG	5 cut(s)	602, 616, 1498, 1509, 1828
BseJI	GATNNNNATC	2 cut(s)	879, 1497
BseLI	CCNNNNNNNGG	1 cut(s)	1084
BseMII	CTCAG	3 cut(s)	1056, 1674, 2043
BseNI	ACTGG	6 cut(s)	914, 1436, 1738, 1745, 1762, 1793
BseRI	GAGGAG	2 cut(s)	1021, 1784
BseSI	GKGCMC	1 cut(s)	1194
BseXI	GCAGC	6 cut(s)	788, 1029, 1191, 1286, 1541, 2145
BseYI	CCCAGC	1 cut(s)	2018
BshFI	GGCC	6 cut(s)	1047, 1056, 1157, 1254, 1436, 1798
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	5 cut(s)	89, 942, 1109, 1194, 1966
BsiHKCI	CYCGRG	2 cut(s)	1438, 1721
BslFI	GGGAC	3 cut(s)	676, 1648, 2001
BslI	CCNNNNNNNGG	1 cut(s)	1084
BsmAI	GTCTC	5 cut(s)	249, 1241, 1254, 1324, 1341
BsmFI	GGGAC	3 cut(s)	676, 1648, 2001
BsmI	GAATGC	1 cut(s)	1921
BsnI	GGCC	6 cut(s)	1047, 1056, 1157, 1254, 1436, 1798
Bso31I	GGTCTC	2 cut(s)	1254, 1341
BsoBI	CYCGRG	2 cut(s)	1438, 1721
Bsp1286I	GDGCHC	5 cut(s)	89, 942, 1109, 1194, 1966
Bsp143I	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
BspACI	CCGC	3 cut(s)	300, 582, 1309
BspANI	GGCC	6 cut(s)	1047, 1056, 1157, 1254, 1436, 1798
BspCNI	CTCAG	3 cut(s)	1055, 1675, 2044
BspLI	GGNNCC	2 cut(s)	6, 1653
BspOI	GCTAGC	1 cut(s)	1586
BspPI	GGATC	3 cut(s)	869, 1468, 1841
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	1254, 1341
BsrBI	CCGCTC	1 cut(s)	300
BsrI	ACTGG	6 cut(s)	914, 1436, 1738, 1745, 1762, 1793
BssECI	CCNNGG	3 cut(s)	607, 1152, 1255
BssMI	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
BssNI	GRCGYC	2 cut(s)	5, 1741
BssSI	CACGAG	2 cut(s)	1102, 1623
BssT1I	CCWWGG	2 cut(s)	607, 1255
Bst2BI	CACGAG	2 cut(s)	1102, 1623
Bst2UI	CCWGG	2 cut(s)	803, 1154
Bst4CI	ACNGT	3 cut(s)	681, 849, 1835
Bst6I	CTCTTC	2 cut(s)	1872, 2157
BstACI	GRCGYC	2 cut(s)	5, 1741
BstC8I	GCNNGC	4 cut(s)	666, 1476, 1584, 1888
BstDEI	CTNAG	6 cut(s)	1042, 1126, 1563, 1683, 1780, 2052
BstF5I	GGATG	5 cut(s)	602, 616, 1498, 1509, 1828
BstH2I	RGCGCY	2 cut(s)	8, 2025
BstHHI	GCGC	3 cut(s)	7, 997, 2024
BstKTI	GATC	5 cut(s)	877, 1463, 1509, 1849, 1873
BstMAI	GTCTC	5 cut(s)	249, 1241, 1254, 1324, 1341
BstMBI	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
BstMWI	GCNNNNNNNGC	6 cut(s)	707, 782, 1053, 1568, 1588, 1723
BstNI	CCWGG	2 cut(s)	803, 1154
BstNSI	RCATGY	4 cut(s)	668, 825, 955, 1902
BstSCI	CCNGG	2 cut(s)	801, 1152
BstSFI	CTRYAG	1 cut(s)	1831
BstSLI	GKGCMC	1 cut(s)	1194
BstV1I	GCAGC	6 cut(s)	788, 1029, 1191, 1286, 1541, 2145
BstX2I	RGATCY	1 cut(s)	1460
BstXI	CCANNNNNNTGG	2 cut(s)	1165, 1431
BstYI	RGATCY	1 cut(s)	1460
BsuRI	GGCC	6 cut(s)	1047, 1056, 1157, 1254, 1436, 1798
BtsCI	GGATG	5 cut(s)	602, 616, 1498, 1509, 1828
BtsIMutI	CAGTG	4 cut(s)	1089, 1752, 1755, 1840
Cac8I	GCNNGC	4 cut(s)	666, 1476, 1584, 1888
CfoI	GCGC	3 cut(s)	7, 997, 2024
Cfr13I	GGNCC	3 cut(s)	1046, 1055, 1434
CseI	GACGC	1 cut(s)	1893
Csp6I	GTAC	3 cut(s)	925, 1645, 1958
CspCI	CAANNNNNGTGG	4 cut(s)	187, 217, 222, 252
CviQI	GTAC	3 cut(s)	925, 1645, 1958
DdeI	CTNAG	6 cut(s)	1042, 1126, 1563, 1683, 1780, 2052
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	876, 1462, 1508, 1848, 1872
DpnII	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
DrdI	GACNNNNNNGTC	1 cut(s)	1687
DseDI	GACNNNNNNGTC	1 cut(s)	1687
EaeI	YGGCCR	1 cut(s)	1252
Eam1104I	CTCTTC	2 cut(s)	1872, 2157
EarI	CTCTTC	2 cut(s)	1872, 2157
Ecl136II	GAGCTC	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	607, 1255
Eco147I	AGGCCT	1 cut(s)	1798
Eco24I	GRGCYC	1 cut(s)	89
Eco31I	GGTCTC	2 cut(s)	1254, 1341
Eco47III	AGCGCT	1 cut(s)	2023
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	3 cut(s)	147, 1065, 1125
Eco88I	CYCGRG	2 cut(s)	1438, 1721
EcoICRI	GAGCTC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	1046
EcoRI	GAATTC	1 cut(s)	1268
EcoRII	CCWGG	2 cut(s)	801, 1152
EcoT14I	CCWWGG	2 cut(s)	607, 1255
EcoT38I	GRGCYC	1 cut(s)	89
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	607, 1255
FaqI	GGGAC	3 cut(s)	676, 1648, 2001
FauI	CCCGC	2 cut(s)	293, 575
FauNDI	CATATG	1 cut(s)	1117
FbaI	TGATCA	1 cut(s)	1870
FblI	GTMKAC	2 cut(s)	1619, 1785
Fnu4HI	GCNGC	6 cut(s)	777, 1018, 1205, 1275, 1530, 2134
FokI	GGATG	5 cut(s)	589, 603, 1485, 1496, 1835
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	6 cut(s)	777, 1018, 1205, 1275, 1530, 2134
GlaI	GCGC	3 cut(s)	6, 996, 2023
GluI	GCNGC	6 cut(s)	777, 1018, 1205, 1275, 1530, 2134
GsaI	CCCAGC	1 cut(s)	2022
GsuI	CTGGAG	6 cut(s)	168, 192, 273, 681, 801, 1779
HaeII	RGCGCY	2 cut(s)	8, 2025
HaeIII	GGCC	6 cut(s)	1047, 1056, 1157, 1254, 1436, 1798
HgaI	GACGC	1 cut(s)	1893
HhaI	GCGC	3 cut(s)	7, 997, 2024
Hin1I	GRCGYC	2 cut(s)	5, 1741
Hin6I	GCGC	3 cut(s)	5, 995, 2022
HinP1I	GCGC	3 cut(s)	5, 995, 2022
HincII	GTYRAC	2 cut(s)	1680, 1908
HindII	GTYRAC	2 cut(s)	1680, 1908
HinfI	GANTC	7 cut(s)	20, 275, 613, 1095, 1414, 2060, 2066
HphI	GGTGA	3 cut(s)	738, 747, 1298
Hpy166II	GTNNAC	7 cut(s)	1192, 1421, 1620, 1680, 1750, 1786, 1908
Hpy188I	TCNGA	6 cut(s)	127, 345, 411, 1693, 2053, 2065
Hpy8I	GTNNAC	7 cut(s)	1192, 1421, 1620, 1680, 1750, 1786, 1908
Hpy99I	CGWCG	1 cut(s)	1743
HpyCH4III	ACNGT	3 cut(s)	681, 849, 1835
HpyCH4IV	ACGT	3 cut(s)	942, 1605, 1741
HpyF10VI	GCNNNNNNNGC	6 cut(s)	707, 782, 1053, 1568, 1588, 1723
HpyF3I	CTNAG	6 cut(s)	1042, 1126, 1563, 1683, 1780, 2052
HpySE526I	ACGT	3 cut(s)	942, 1605, 1741
Hsp92I	GRCGYC	2 cut(s)	5, 1741
HspAI	GCGC	3 cut(s)	5, 995, 2022
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	1870
Kzo9I	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
LmnI	GCTCC	5 cut(s)	267, 782, 920, 992, 1657
Lsp1109I	GCAGC	6 cut(s)	788, 1029, 1191, 1286, 1541, 2145
LweI	GCATC	2 cut(s)	1006, 1673
MaeII	ACGT	3 cut(s)	942, 1605, 1741
MaeIII	GTNAC	5 cut(s)	119, 245, 590, 1517, 1606
MalI	GATC	5 cut(s)	876, 1462, 1508, 1848, 1872
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
MboII	GAAGA	6 cut(s)	72, 850, 1502, 1889, 2098, 2174
MflI	RGATCY	1 cut(s)	1460
MhlI	GDGCHC	5 cut(s)	89, 942, 1109, 1194, 1966
MlsI	TGGCCA	1 cut(s)	1254
MluNI	TGGCCA	1 cut(s)	1254
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	2060
MmeI	TCCRAC	3 cut(s)	959, 1059, 2088
Mox20I	TGGCCA	1 cut(s)	1254
MscI	TGGCCA	1 cut(s)	1254
MseI	TTAA	3 cut(s)	1341, 1524, 1541
Msp20I	TGGCCA	1 cut(s)	1254
MspA1I	CMGCKG	1 cut(s)	779
MspR9I	CCNGG	2 cut(s)	803, 1154
Mva1269I	GAATGC	1 cut(s)	1921
MvaI	CCWGG	2 cut(s)	803, 1154
MwoI	GCNNNNNNNGC	6 cut(s)	707, 782, 1053, 1568, 1588, 1723
NarI	GGCGCC	1 cut(s)	5
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
NheI	GCTAGC	1 cut(s)	1582
NlaIV	GGNNCC	2 cut(s)	6, 1653
NmuCI	GTSAC	1 cut(s)	1517
NspI	RCATGY	4 cut(s)	668, 825, 955, 1902
PaeI	GCATGC	1 cut(s)	668
PaeR7I	CTCGAG	2 cut(s)	1438, 1721
PceI	AGGCCT	1 cut(s)	1798
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PctI	GAATGC	1 cut(s)	1921
PfeI	GAWTC	6 cut(s)	20, 275, 613, 1095, 1414, 2060
PflFI	GACNNNGTC	1 cut(s)	1740
PkrI	GCNGC	6 cut(s)	778, 1019, 1206, 1276, 1531, 2135
PleI	GAGTC	1 cut(s)	2060
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	2060
Psp124BI	GAGCTC	1 cut(s)	89
Psp1406I	AACGTT	1 cut(s)	1605
Psp6I	CCWGG	2 cut(s)	801, 1152
PspFI	CCCAGC	1 cut(s)	2018
PspGI	CCWGG	2 cut(s)	801, 1152
PspN4I	GGNNCC	2 cut(s)	6, 1653
PspPI	GGNCC	3 cut(s)	1046, 1055, 1434
PspXI	VCTCGAGB	1 cut(s)	1438
PsuI	RGATCY	1 cut(s)	1460
PsyI	GACNNNGTC	1 cut(s)	1740
PvuII	CAGCTG	1 cut(s)	779
RsaI	GTAC	3 cut(s)	926, 1646, 1959
RsaNI	GTAC	3 cut(s)	925, 1645, 1958
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	1341, 1524, 1541
SatI	GCNGC	6 cut(s)	777, 1018, 1205, 1275, 1530, 2134
Sau3AI	GATC	5 cut(s)	874, 1460, 1506, 1846, 1870
Sau96I	GGNCC	3 cut(s)	1046, 1055, 1434
SchI	GAGTC	1 cut(s)	2060
ScrFI	CCNGG	2 cut(s)	803, 1154
SduI	GDGCHC	5 cut(s)	89, 942, 1109, 1194, 1966
SfaNI	GCATC	2 cut(s)	1006, 1673
SfcI	CTRYAG	1 cut(s)	1831
SfiI	GGCCNNNNNGGCC	1 cut(s)	1053
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	2 cut(s)	1438, 1721
SlaI	CTCGAG	2 cut(s)	1438, 1721
SmlI	CTYRAG	3 cut(s)	1391, 1438, 1721
SmoI	CTYRAG	3 cut(s)	1391, 1438, 1721
SpeI	ACTAGT	1 cut(s)	2045
SphI	GCATGC	1 cut(s)	668
SseBI	AGGCCT	1 cut(s)	1798
SsiI	CCGC	3 cut(s)	300, 582, 1309
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	1537
SstI	GAGCTC	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	1798
StyD4I	CCNGG	2 cut(s)	801, 1152
StyI	CCWWGG	2 cut(s)	607, 1255
TaaI	ACNGT	3 cut(s)	681, 849, 1835
TaiI	ACGT	3 cut(s)	945, 1608, 1744
TaqI	TCGA	5 cut(s)	83, 296, 1439, 1667, 1722
TaqII	GACCGA	2 cut(s)	1278, 1365
TfiI	GAWTC	6 cut(s)	20, 275, 613, 1095, 1414, 2060
Tru1I	TTAA	3 cut(s)	1341, 1524, 1541
Tru9I	TTAA	3 cut(s)	1341, 1524, 1541
TscAI	CASTG	4 cut(s)	1089, 1752, 1762, 1840
TseFI	GTSAC	1 cut(s)	1517
TseI	GCWGC	6 cut(s)	776, 1017, 1204, 1274, 1529, 2133
Tsp45I	GTSAC	1 cut(s)	1517
TspDTI	ATGAA	5 cut(s)	962, 1040, 1394, 2013, 2099
TspGWI	ACGGA	1 cut(s)	1359
TspRI	CASTG	4 cut(s)	1089, 1752, 1762, 1840
Tth111I	GACNNNGTC	1 cut(s)	1740
VneI	GTGCAC	1 cut(s)	1190
XapI	RAATTY	3 cut(s)	34, 1268, 2089
XbaI	TCTAGA	1 cut(s)	827
XceI	RCATGY	4 cut(s)	668, 825, 955, 1902
XcmI	CCANNNNNNNNNTGG	2 cut(s)	512, 1428
XhoI	CTCGAG	2 cut(s)	1438, 1721
XmiI	GTMKAC	2 cut(s)	1619, 1785
ZraI	GACGTC	1 cut(s)	1742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.