Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012712

Physical Location & Seq

Genomic Coordinates Forward (+)

1121325 .. 1122018

Gene Structure 694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0007500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCAAGCCCATCACATTGTTACAAGGGGAAATGACTCGGTTGTTCGTAAAGGTGGTTTGAAAACAGTCCAGATAATGGCAGAAAGGCGACAAGGTAATAAGAAAATCACCAAGTTATCAGGACTGGAAACATTTATAGTGGATCCTGAAGCTTTGGCATTAGAGCTACAAAAGAAGTTCGCTTGCAGCACAACTGTGGCAGAACTACCAGGTAAGAAGGGGCAGGAGGTTCTGGTTCAAGGTGGAGTAATTGAAAATCTGGCAAAGCACTTGATTGAACAATATGGGATTCCAAAGAGATACATTGAGGTTCTTGACAAACCCAGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

9.76

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SUI1	PF01253	21 - 98	1.1e-22	Translation initiation factor SUI1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012712)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49270 AT3G18810 AT4G34440 AT4G34440
fragaria_vesca	FvH4_2g08640
malus_domestica	MD05G1067600.v1.1 MD10G1077600.v1.1
prunus_persica	Prupe.8G098300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0264041
rosa_laevigata	RLG00000014294
rosa_roxburghii	Rroxscaffold_176G00431380 Rroxscaffold_7G00203640
rosa_rugosa	Rorug06G0007400 Rorug06G0007500
rosa_samantha	Rh6AG128700 Rh6CG123900 Rh6DG110700
rosa_wichuraiana	Rw6G011120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AclWI	GGATC	2 cut(s)	137, 150
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	61, 239, 254, 278
AjnI	CCWGG	2 cut(s)	208, 323
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	152, 166
AluI	AGCT	2 cut(s)	152, 166
AlwI	GGATC	2 cut(s)	137, 150
ApeKI	GCWGC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	100
BamHI	GGATCC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	18
BciT130I	CCWGG	2 cut(s)	210, 325
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
Bme1390I	CCNGG	2 cut(s)	210, 325
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	210, 325
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	210, 325
BseDI	CCNNGG	1 cut(s)	323
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	144
BspPI	GGATC	2 cut(s)	137, 150
BsrI	ACTGG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	210, 325
Bst4CI	ACNGT	2 cut(s)	67, 196
BstC8I	GCNNGC	2 cut(s)	6, 184
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNI	CCWGG	2 cut(s)	210, 325
BstSCI	CCNGG	2 cut(s)	208, 323
BstV1I	GCAGC	1 cut(s)	198
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
Cac8I	GCNNGC	2 cut(s)	6, 184
CsiI	ACCWGGT	1 cut(s)	208
CviJI	RGCY	3 cut(s)	8, 152, 166
CviKI_1	RGCY	3 cut(s)	8, 152, 166
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	2 cut(s)	208, 323
FaiI	YATR	2 cut(s)	137, 285
Fnu4HI	GCNGC	1 cut(s)	187
Fsp4HI	GCNGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	150
HinfI	GANTC	2 cut(s)	35, 289
HphI	GGTGA	1 cut(s)	100
Hpy188III	TCNNGA	4 cut(s)	70, 120, 146, 314
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	67, 196
HpyCH4V	TGCA	2 cut(s)	4, 186
Kzo9I	GATC	1 cut(s)	142
Lsp1109I	GCAGC	1 cut(s)	198
MabI	ACCWGGT	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	2 cut(s)	220, 301
MslI	CAYNNNNRTG	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	210, 325
MvaI	CCWGG	2 cut(s)	210, 325
NdeII	GATC	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	144
OliI	CACNNNNGTG	1 cut(s)	194
PfeI	GAWTC	1 cut(s)	289
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	208, 323
PspGI	CCWGG	2 cut(s)	208, 323
PspN4I	GGNNCC	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	194
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	210, 325
SetI	ASST	8 cut(s)	55, 97, 154, 168, 214, 231, 244, 312
SexAI	ACCWGGT	1 cut(s)	208
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	208, 323
TaaI	ACNGT	2 cut(s)	67, 196
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	186
Van91I	CCANNNNNTGG	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.