Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005728

Physical Location & Seq

Genomic Coordinates Reverse (-)

20870013 .. 20871837

Gene Structure 1825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGAAGAAGCAACGAGATGAAATCATGGAAGAATTCAGGGCCGCCTTAGAACAAAGATCACAACTCACCTTAGAACAAAGATCACAACTCGCCTTAGAACAAAGATCACAACTCGAGAGCCAAATTGCAGAGTCTGATCAGCTGGTTCAGAGCTTGGAGCAGAAGATCATATCTGCTGTGGATCTCTTACAAAATTACAAAAGAGAACGGGATGAGTTGCATGTAGAACGTGACAATGCTCTTAGAGAAGCAGAGGAGCTAAGGAAAAGACAAGGAGAGGCCTCAAGCACACAGATGCCTCAGTTCTTCAATGATTTTTCATTTCCCGAGATTGAGGAAGCAACTCGACACTTTGACCCATCACTTAAGATTGGAGAAGGTGGATATGGAAGCATTTTCAAAGGTTTCCTACGTCACACTGAGGTGGCTATAAAAATGCTAAATGATCATAGTTTGCAAGGTCCCTCTGAATTCCAGCAAGAGGTGGAAATATTAAGTAGGCTGAGGCATACCAATCTTGTCACCCTCATTGGTGCCTGCCCAGAAGCTTGGACTCTTATCTATGAGTATCTTGCAAATGGAAGCCTTGAAGATCGACTAAGTTGCAAGGACAATACTCCCCCATTATCATGGCAAGCTCGAATACGCATTGCTACTGAGTTGTGTTCTGTCCTAATCTTTCTCCACTCCAGTAAACCACACAGCGTAGTACATGGTGATTTGAAACCCTCCAATATTCTCCTTGATGCTAATTTTGTTTGCAAACTTAGTGACTTTGGCATCAGTCGGCTTTTGTCTCGAGGTCAAGATTCAAGCAACAACACAACACTCTGTTGCTGGACTGGTCCAAAAGGTACTATCGCTTACATGGATCCTGAGTTCCTTTCGTCGGGAGAGCTTACACCGAAGTCAGATGTGTATTCATTTGGAATTATACTCTTACAATTGTTAACCGGAAAACCAGCTTTGGGAATAACAAAGGAAGTACAGTATGCATTAGATTCTGGAAAGTTGGAAACCCTCTTGGATCCTTTAGCAGGAGACTGGCCATTTGTACAGGCTGAACAGTTGGCTCGCTTAGCATTGAGGTGTTGTGAGATGAGCCGGAAGTGCAGGGCAGACCTTGTGTCAGATGTGTGGAGGGTACTTGAACCAATGAGGGCTTCATGTGGCTCCTTATCATCATTCCGGCTGGGTACTGAAGAGCACTTCCAACCTCCCTCATACTTCATCTGTCCCATTTTCGAGTCATGCAAGATCCACATGTTGCAGCAGATGGTTTCACTTATGAAGCAGAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr U-box

Protein Analysis

434

Amino Acids

49.28

Weight (kDa)

5.53

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	123 - 372	1.9e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	123 - 326	1.2e-39	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45910 AT2G45910
fragaria_vesca	FvH4_7g14340 FvH4_7g14340 FvH4_7g14340 FvH4_7g14340 FvH4_7g14340 FvH4_7g14340
malus_domestica	MD01G1061400.v1.1 MD07G1136700.v1.1
prunus_persica	Prupe.2G170900_v2.0.a1 Prupe.2G170900_v2.0.a1 Prupe.2G170900_v2.0.a1 Prupe.2G170900_v2.0.a1
pyrus_communis	pycom01g09150 pycom07g13440
rosa_chinensis	RchiOBHm_Chr1g0355361 RchiOBHm_Chr6g0265291
rosa_laevigata	RLG00000028150
rosa_multiflora	Rmu_sc0002037.1_g000029 Rmu_sc0004128.1_g000003
rosa_roxburghii	Rroxscaffold_4G00300470
rosa_rugosa	Rorug01G0246800
rosa_samantha	Rh1AG259300 Rh1BG228900 Rh1CG243300 Rh1DG256800
rosa_wichuraiana	Rw1G022860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	533
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	6 cut(s)	189, 866, 879, 1022, 1035, 1252
AcoI	YGGCCR	1 cut(s)	1046
AcsI	RAATTY	2 cut(s)	32, 470
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	6 cut(s)	711, 856, 987, 1056, 1146, 1198
AfiI	CCNNNNNNNGG	4 cut(s)	481, 889, 968, 1037
AflII	CTTAAG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	1263
AgsI	TTSAA	6 cut(s)	310, 400, 590, 724, 813, 1151
AhdI	GACNNNNNGTC	1 cut(s)	1126
AjuI	GAANNNNNNNTTGG	2 cut(s)	1147, 1179
AleI	CACNNNNGTG	1 cut(s)	422
AloI	GAACNNNNNNTCC	2 cut(s)	863, 895
AluBI	AGCT	7 cut(s)	142, 153, 259, 548, 638, 898, 965
AluI	AGCT	7 cut(s)	142, 153, 259, 548, 638, 898, 965
Alw21I	GWGCWC	1 cut(s)	1209
Alw26I	GTCTC	2 cut(s)	801, 1035
AlwI	GGATC	6 cut(s)	189, 866, 879, 1022, 1035, 1252
AlwNI	CAGNNNCTG	1 cut(s)	134
Ama87I	CYCGRG	3 cut(s)	113, 326, 798
AoxI	GGCC	3 cut(s)	39, 279, 1046
ApeKI	GCWGC	1 cut(s)	1270
ApoI	RAATTY	2 cut(s)	32, 470
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AspS9I	GGNCC	3 cut(s)	39, 461, 845
AsuHPI	GGTGA	3 cut(s)	58, 514, 728
AvaI	CYCGRG	3 cut(s)	113, 326, 798
AvaII	GGWCC	2 cut(s)	461, 845
BalI	TGGCCA	1 cut(s)	1048
BamHI	GGATCC	2 cut(s)	871, 1027
BanI	GGYRCC	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	1209
BbvCI	CCTCAGC	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	1282
BccI	CCATC	2 cut(s)	367, 1270
BcgI	CGANNNNNNTGC	2 cut(s)	585, 619
BclI	TGATCA	2 cut(s)	136, 445
BcoDI	GTCTC	2 cut(s)	801, 1035
BfrI	CTTAAG	1 cut(s)	365
BisI	GCNGC	2 cut(s)	42, 1271
BlpI	GCTNAGC	1 cut(s)	1078
BlsI	GCNGC	2 cut(s)	43, 1272
Bme18I	GGWCC	2 cut(s)	461, 845
BmeRI	GACNNNNNGTC	1 cut(s)	1126
BmeT110I	CYCGRG	3 cut(s)	113, 326, 798
BmgT120I	GGNCC	3 cut(s)	39, 461, 845
BmiI	GGNNCC	5 cut(s)	463, 535, 873, 1029, 1174
BmsI	GCATC	3 cut(s)	285, 736, 789
BpmI	CTGGAG	1 cut(s)	673
Bpu10I	CCTNAGC	2 cut(s)	260, 503
Bpu1102I	GCTNAGC	1 cut(s)	1078
BpuEI	CTTGAG	1 cut(s)	268
BsaWI	WCCGGW	1 cut(s)	953
Bsc4I	CCNNNNNNNGG	4 cut(s)	481, 889, 968, 1037
Bse1I	ACTGG	3 cut(s)	690, 847, 1049
Bse3DI	GCAATG	1 cut(s)	648
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	4 cut(s)	481, 889, 968, 1037
BseMI	GCAATG	1 cut(s)	648
BseMII	CTCAG	5 cut(s)	314, 411, 494, 648, 867
BseNI	ACTGG	3 cut(s)	690, 847, 1049
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	1282
BseYI	CCCAGC	1 cut(s)	1192
BsgI	GTGCAG	1 cut(s)	1132
BshFI	GGCC	3 cut(s)	41, 281, 1048
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	1 cut(s)	1209
BsiHKCI	CYCGRG	3 cut(s)	113, 326, 798
BsiSI	CCGG	3 cut(s)	954, 1105, 1189
BslFI	GGGAC	2 cut(s)	447, 1221
BslI	CCNNNNNNNGG	4 cut(s)	481, 889, 968, 1037
BsmAI	GTCTC	2 cut(s)	801, 1035
BsmFI	GGGAC	2 cut(s)	447, 1221
BsnI	GGCC	3 cut(s)	41, 281, 1048
BsoBI	CYCGRG	3 cut(s)	113, 326, 798
Bsp1286I	GDGCHC	1 cut(s)	1209
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp1720I	GCTNAGC	1 cut(s)	1078
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	3 cut(s)	41, 281, 1048
BspCNI	CTCAG	5 cut(s)	313, 412, 495, 649, 868
BspLI	GGNNCC	5 cut(s)	463, 535, 873, 1029, 1174
BspPI	GGATC	6 cut(s)	189, 866, 879, 1022, 1035, 1252
BspQI	GCTCTTC	1 cut(s)	1197
BspT107I	GGYRCC	1 cut(s)	533
BspTI	CTTAAG	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	648
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	3 cut(s)	690, 847, 1049
Bst4CI	ACNGT	2 cut(s)	990, 1068
Bst6I	CTCTTC	1 cut(s)	1197
BstAFI	CTTAAG	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	1054
BstC8I	GCNNGC	3 cut(s)	538, 636, 1075
BstENI	CCTNNNNNAGG	1 cut(s)	1035
BstF5I	GGATG	1 cut(s)	217
BstMAI	GTCTC	2 cut(s)	801, 1035
BstMWI	GCNNNNNNNGC	2 cut(s)	1079, 1110
BstNSI	RCATGY	2 cut(s)	224, 1267
BstV1I	GCAGC	1 cut(s)	1282
BstX2I	RGATCY	4 cut(s)	181, 871, 1027, 1257
BstXI	CCANNNNNNTGG	2 cut(s)	549, 630
BstYI	RGATCY	4 cut(s)	181, 871, 1027, 1257
BsuRI	GGCC	3 cut(s)	41, 281, 1048
BtsCI	GGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	3 cut(s)	538, 636, 1075
CaiI	CAGNNNCTG	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	39, 461, 845
Csp6I	GTAC	6 cut(s)	710, 855, 986, 1055, 1145, 1197
CviAII	CATG	8 cut(s)	25, 221, 630, 713, 868, 1167, 1251, 1264
CviQI	GTAC	6 cut(s)	710, 855, 986, 1055, 1145, 1197
DriI	GACNNNNNGTC	1 cut(s)	1126
EaeI	YGGCCR	1 cut(s)	1046
Eam1104I	CTCTTC	1 cut(s)	1197
Eam1105I	GACNNNNNGTC	1 cut(s)	1126
EarI	CTCTTC	1 cut(s)	1197
Eco147I	AGGCCT	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	461, 845
Eco57I	CTGAAG	1 cut(s)	1221
Eco88I	CYCGRG	3 cut(s)	113, 326, 798
EcoNI	CCTNNNNNAGG	1 cut(s)	1035
EcoO109I	RGGNCCY	1 cut(s)	461
EcoRI	GAATTC	2 cut(s)	32, 470
EcoT22I	ATGCAT	1 cut(s)	997
FaeI	CATG	8 cut(s)	28, 224, 633, 716, 871, 1170, 1254, 1267
FaqI	GGGAC	2 cut(s)	447, 1221
FatI	CATG	8 cut(s)	24, 220, 629, 712, 867, 1166, 1250, 1263
FbaI	TGATCA	2 cut(s)	136, 445
Fnu4HI	GCNGC	2 cut(s)	42, 1271
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	42, 1271
GluI	GCNGC	2 cut(s)	42, 1271
GsaI	CCCAGC	1 cut(s)	1196
GsuI	CTGGAG	1 cut(s)	673
HaeIII	GGCC	3 cut(s)	41, 281, 1048
HapII	CCGG	3 cut(s)	954, 1105, 1189
Hin1II	CATG	8 cut(s)	28, 224, 633, 716, 871, 1170, 1254, 1267
HincII	GTYRAC	1 cut(s)	951
HindII	GTYRAC	1 cut(s)	951
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	5 cut(s)	131, 553, 809, 1001, 1247
HpaI	GTTAAC	1 cut(s)	951
HpaII	CCGG	3 cut(s)	954, 1105, 1189
HphI	GGTGA	3 cut(s)	58, 514, 728
Hpy166II	GTNNAC	2 cut(s)	695, 951
Hpy188I	TCNGA	6 cut(s)	136, 150, 469, 913, 1132, 1304
Hpy188III	TCNNGA	7 cut(s)	115, 326, 798, 806, 875, 891, 1005
Hpy8I	GTNNAC	2 cut(s)	695, 951
Hpy99I	CGWCG	1 cut(s)	892
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	990, 1068
HpyCH4IV	ACGT	2 cut(s)	229, 412
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1079, 1110
HpySE526I	ACGT	2 cut(s)	229, 412
Hsp92II	CATG	8 cut(s)	28, 224, 633, 716, 871, 1170, 1254, 1267
Ksp22I	TGATCA	2 cut(s)	136, 445
KspAI	GTTAAC	1 cut(s)	951
LguI	GCTCTTC	1 cut(s)	1197
LmnI	GCTCC	3 cut(s)	157, 256, 1178
Lsp1109I	GCAGC	1 cut(s)	1282
LweI	GCATC	3 cut(s)	285, 736, 789
MaeII	ACGT	2 cut(s)	229, 412
MaeIII	GTNAC	4 cut(s)	230, 413, 520, 770
MboII	GAAGA	6 cut(s)	16, 41, 175, 298, 602, 1214
MfeI	CAATTG	1 cut(s)	944
MflI	RGATCY	4 cut(s)	181, 871, 1027, 1257
MhlI	GDGCHC	1 cut(s)	1209
MlsI	TGGCCA	1 cut(s)	1048
MluCI	AATT	7 cut(s)	32, 123, 193, 470, 751, 930, 944
MluNI	TGGCCA	1 cut(s)	1048
MlyI	GAGTC	3 cut(s)	140, 547, 1256
MmeI	TCCRAC	2 cut(s)	993, 1237
Mox20I	TGGCCA	1 cut(s)	1048
Mph1103I	ATGCAT	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	1048
MseI	TTAA	3 cut(s)	366, 494, 950
MslI	CAYNNNNRTG	4 cut(s)	293, 422, 628, 1087
Msp20I	TGGCCA	1 cut(s)	1048
MspA1I	CMGCKG	1 cut(s)	142
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	3 cut(s)	954, 1105, 1189
MunI	CAATTG	1 cut(s)	944
MwoI	GCNNNNNNNGC	2 cut(s)	1079, 1110
NlaIII	CATG	8 cut(s)	28, 224, 633, 716, 871, 1170, 1254, 1267
NlaIV	GGNNCC	5 cut(s)	463, 535, 873, 1029, 1174
NmuCI	GTSAC	4 cut(s)	230, 413, 520, 770
NsiI	ATGCAT	1 cut(s)	997
NspI	RCATGY	2 cut(s)	224, 1267
OliI	CACNNNNGTG	1 cut(s)	422
PaeR7I	CTCGAG	2 cut(s)	113, 798
PceI	AGGCCT	1 cut(s)	281
PciI	ACATGT	1 cut(s)	1263
PciSI	GCTCTTC	1 cut(s)	1197
PfeI	GAWTC	2 cut(s)	809, 1001
PkrI	GCNGC	2 cut(s)	43, 1272
PleI	GAGTC	3 cut(s)	139, 547, 1255
PpsI	GAGTC	3 cut(s)	139, 547, 1255
PpuMI	RGGWCCY	1 cut(s)	461
PscI	ACATGT	1 cut(s)	1263
Psp5II	RGGWCCY	1 cut(s)	461
PspFI	CCCAGC	1 cut(s)	1192
PspN4I	GGNNCC	5 cut(s)	463, 535, 873, 1029, 1174
PspPI	GGNCC	3 cut(s)	39, 461, 845
PspPPI	RGGWCCY	1 cut(s)	461
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	4 cut(s)	181, 871, 1027, 1257
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	6 cut(s)	711, 856, 987, 1056, 1146, 1198
RsaNI	GTAC	6 cut(s)	710, 855, 986, 1055, 1145, 1197
RseI	CAYNNNNRTG	4 cut(s)	293, 422, 628, 1087
SapI	GCTCTTC	1 cut(s)	1197
SaqAI	TTAA	3 cut(s)	366, 494, 950
SatI	GCNGC	2 cut(s)	42, 1271
Sau96I	GGNCC	3 cut(s)	39, 461, 845
SchI	GAGTC	3 cut(s)	140, 547, 1256
SduI	GDGCHC	1 cut(s)	1209
SfaNI	GCATC	3 cut(s)	285, 736, 789
Sfr274I	CTCGAG	2 cut(s)	113, 798
SinI	GGWCC	2 cut(s)	461, 845
SlaI	CTCGAG	2 cut(s)	113, 798
SmiMI	CAYNNNNRTG	4 cut(s)	293, 422, 628, 1087
SmlI	CTYRAG	4 cut(s)	113, 283, 365, 798
SmoI	CTYRAG	4 cut(s)	113, 283, 365, 798
Sse9I	AATT	7 cut(s)	32, 123, 193, 470, 751, 930, 944
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	1 cut(s)	42
SspI	AATATT	2 cut(s)	492, 736
StuI	AGGCCT	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	990, 1068
TaiI	ACGT	2 cut(s)	232, 415
TaqI	TCGA	6 cut(s)	114, 346, 595, 640, 799, 1245
TasI	AATT	7 cut(s)	32, 123, 193, 470, 751, 930, 944
TatI	WGTACW	3 cut(s)	709, 985, 1054
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	809, 1001
Tru1I	TTAA	3 cut(s)	366, 494, 950
Tru9I	TTAA	3 cut(s)	366, 494, 950
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	4 cut(s)	230, 413, 520, 770
TseI	GCWGC	1 cut(s)	1270
Tsp45I	GTSAC	4 cut(s)	230, 413, 520, 770
TspDTI	ATGAA	7 cut(s)	17, 33, 309, 912, 1155, 1219, 1304
TspRI	CASTG	1 cut(s)	424
Vha464I	CTTAAG	1 cut(s)	365
VpaK11BI	GGWCC	2 cut(s)	461, 845
XagI	CCTNNNNNAGG	1 cut(s)	1035
XapI	RAATTY	2 cut(s)	32, 470
XceI	RCATGY	2 cut(s)	224, 1267
XhoI	CTCGAG	2 cut(s)	113, 798
Zsp2I	ATGCAT	1 cut(s)	997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.