Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020574

Physical Location & Seq

Genomic Coordinates Forward (+)

25292170 .. 25292670

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTTCCATCTGATGAAATGGAGTTGTCTGCTGAAGTAAAAGAAGAGGGAGCTGCTAATGAAACATTTCCATCTGACGATTCTAGGCCTTCAAAGAAGTCAAGATCTGTAATTGAAGAGGAGTTTGGTTCTGGTGAAGCAGATTATGGAGGTGTGAGAGCTGCAGGAAAAGTTGTTGGGCAAACCTGCATGGAACCTGAACCAGAAGCTGCAGCTAACACTGAATTCTCAGAGAATGATAAAAGTTTAAAGACACACCCACGTGAAAAGAAGCTTATTGACTTCAGAGAAAAGTTGTACCTTGCACCTTTGACCGCAGTCGGAAATCTTCCATTTCGAAGGTTTGCAAAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

118

Amino Acids

13.03

Weight (kDa)

4.92

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020574)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268431 RchiOBHm_Chr6g0268441 RchiOBHm_Chr6g0271641
rosa_roxburghii	Rroxscaffold_7G00199810
rosa_samantha	Rh6AG161400 Rh6CG159300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AciI	CCGC	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	2 cut(s)	54, 268
AcvI	CACGTG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	93, 116
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AleI	CACNNNNGTG	1 cut(s)	261
AluBI	AGCT	5 cut(s)	53, 161, 209, 215, 274
AluI	AGCT	5 cut(s)	53, 161, 209, 215, 274
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	86
ApeKI	GCWGC	4 cut(s)	53, 161, 209, 212
ApoI	RAATTY	1 cut(s)	224
Asp700I	GAANNNNTTC	1 cut(s)	66
AsuHPI	GGTGA	1 cut(s)	146
AsuII	TTCGAA	1 cut(s)	337
BbrPI	CACGTG	1 cut(s)	263
BbvI	GCAGC	4 cut(s)	40, 148, 196, 224
BccI	CCATC	2 cut(s)	16, 79
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	2 cut(s)	162, 210
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	4 cut(s)	54, 162, 210, 213
BlsI	GCNGC	4 cut(s)	55, 163, 211, 214
BmiI	GGNNCC	1 cut(s)	195
BoxI	GACNNNNGTC	1 cut(s)	317
Bpu14I	TTCGAA	1 cut(s)	337
BsaAI	YACGTR	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	243
BseRI	GAGGAG	1 cut(s)	134
BseXI	GCAGC	4 cut(s)	40, 148, 196, 224
BshFI	GGCC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	104
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	88
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	2 cut(s)	166, 214
BspMI	ACCTGC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	337
BssMI	GATC	1 cut(s)	104
Bst6I	CTCTTC	2 cut(s)	39, 111
BstBAI	YACGTR	1 cut(s)	263
BstBI	TTCGAA	1 cut(s)	337
BstDEI	CTNAG	1 cut(s)	229
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstPAI	GACNNNNGTC	1 cut(s)	317
BstSFI	CTRYAG	2 cut(s)	162, 210
BstV1I	GCAGC	4 cut(s)	40, 148, 196, 224
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	219
BveI	ACCTGC	1 cut(s)	194
CaiI	CAGNNNCTG	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	190
CviJI	RGCY	6 cut(s)	53, 88, 161, 209, 215, 274
CviKI_1	RGCY	6 cut(s)	53, 88, 161, 209, 215, 274
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
DraI	TTTAAA	1 cut(s)	249
Eam1104I	CTCTTC	2 cut(s)	39, 111
EarI	CTCTTC	2 cut(s)	39, 111
Eco147I	AGGCCT	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	54, 268
Eco72I	CACGTG	1 cut(s)	263
EcoRI	GAATTC	1 cut(s)	224
FaeI	CATG	1 cut(s)	193
FaiI	YATR	2 cut(s)	147, 191
FatI	CATG	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	54, 162, 210, 213
Fsp4HI	GCNGC	4 cut(s)	54, 162, 210, 213
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	4 cut(s)	54, 162, 210, 213
HaeIII	GGCC	1 cut(s)	88
Hin1II	CATG	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	1 cut(s)	80
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	5 cut(s)	13, 76, 232, 287, 323
Hpy188III	TCNNGA	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	99, 333
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	5 cut(s)	164, 189, 212, 305, 347
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	5 cut(s)	117, 150, 199, 210, 216
Lsp1109I	GCAGC	4 cut(s)	40, 148, 196, 224
MaeI	CTAG	1 cut(s)	84
MaeII	ACGT	1 cut(s)	262
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	3 cut(s)	56, 128, 320
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	2 cut(s)	111, 224
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	3 cut(s)	40, 112, 143
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	261
NdeII	GATC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	195
NspV	TTCGAA	1 cut(s)	337
OliI	CACNNNNGTG	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	55, 163, 211, 214
PmaCI	CACGTG	1 cut(s)	263
PmlI	CACGTG	1 cut(s)	263
Ppu21I	YACGTR	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	317
PspCI	CACGTG	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	195
PstI	CTGCAG	2 cut(s)	166, 214
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	4 cut(s)	54, 162, 210, 213
Sau3AI	GATC	1 cut(s)	104
SfcI	CTRYAG	2 cut(s)	162, 210
SfuI	TTCGAA	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	111, 224
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	84
StuI	AGGCCT	1 cut(s)	88
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	337
TasI	AATT	2 cut(s)	111, 224
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	4 cut(s)	53, 161, 209, 212
TspDTI	ATGAA	2 cut(s)	30, 75
TspRI	CASTG	1 cut(s)	226
XapI	RAATTY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.