tRNA-dihydrouridine(47) synthase NAD(P)( )
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0268431 RchiOBHm_Chr6g0268441 RchiOBHm_Chr6g0271641 |
| rosa_roxburghii | Rroxscaffold_7G00199810 |
| rosa_samantha | Rh6AG161400 Rh6CG159300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 362 |
| AclI | AACGTT | 1 cut(s) | 170 |
| AcsI | RAATTY | 2 cut(s) | 98, 392 |
| AcuI | CTGAAG | 1 cut(s) | 222 |
| AgsI | TTSAA | 5 cut(s) | 18, 60, 261, 284, 392 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 276, 308 |
| AluBI | AGCT | 2 cut(s) | 377, 383 |
| AluI | AGCT | 2 cut(s) | 377, 383 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 377 |
| AoxI | GGCC | 1 cut(s) | 254 |
| ApeKI | GCWGC | 3 cut(s) | 329, 377, 380 |
| ApoI | RAATTY | 2 cut(s) | 98, 392 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 171, 234 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| BbvI | GCAGC | 3 cut(s) | 316, 364, 392 |
| BccI | CCATC | 4 cut(s) | 74, 150, 184, 247 |
| BfaI | CTAG | 1 cut(s) | 252 |
| BfmI | CTRYAG | 3 cut(s) | 91, 330, 378 |
| BfuAI | ACCTGC | 1 cut(s) | 362 |
| BglII | AGATCT | 1 cut(s) | 272 |
| BisI | GCNGC | 3 cut(s) | 330, 378, 381 |
| BlsI | GCNGC | 3 cut(s) | 331, 379, 382 |
| BmiI | GGNNCC | 1 cut(s) | 363 |
| BmrI | ACTGGG | 1 cut(s) | 99 |
| BmuI | ACTGGG | 1 cut(s) | 99 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 32, 62 |
| Bse1I | ACTGG | 1 cut(s) | 105 |
| BseGI | GGATG | 2 cut(s) | 121, 161 |
| BseMII | CTCAG | 1 cut(s) | 411 |
| BseNI | ACTGG | 1 cut(s) | 105 |
| BseRI | GAGGAG | 1 cut(s) | 302 |
| BseXI | GCAGC | 3 cut(s) | 316, 364, 392 |
| BshFI | GGCC | 1 cut(s) | 256 |
| BsnI | GGCC | 1 cut(s) | 256 |
| Bsp143I | GATC | 2 cut(s) | 272, 406 |
| BspANI | GGCC | 1 cut(s) | 256 |
| BspCNI | CTCAG | 1 cut(s) | 410 |
| BspLI | GGNNCC | 1 cut(s) | 363 |
| BspMAI | CTGCAG | 2 cut(s) | 334, 382 |
| BspMI | ACCTGC | 1 cut(s) | 362 |
| BsrI | ACTGG | 1 cut(s) | 105 |
| BssMI | GATC | 2 cut(s) | 272, 406 |
| Bst6I | CTCTTC | 2 cut(s) | 207, 279 |
| BstC8I | GCNNGC | 1 cut(s) | 9 |
| BstDEI | CTNAG | 1 cut(s) | 397 |
| BstF5I | GGATG | 2 cut(s) | 121, 161 |
| BstKTI | GATC | 2 cut(s) | 275, 409 |
| BstMBI | GATC | 2 cut(s) | 272, 406 |
| BstNSI | RCATGY | 1 cut(s) | 11 |
| BstSFI | CTRYAG | 3 cut(s) | 91, 330, 378 |
| BstV1I | GCAGC | 3 cut(s) | 316, 364, 392 |
| BstX2I | RGATCY | 1 cut(s) | 272 |
| BstYI | RGATCY | 1 cut(s) | 272 |
| BsuRI | GGCC | 1 cut(s) | 256 |
| BtsCI | GGATG | 2 cut(s) | 121, 161 |
| BveI | ACCTGC | 1 cut(s) | 362 |
| Cac8I | GCNNGC | 1 cut(s) | 9 |
| CaiI | CAGNNNCTG | 1 cut(s) | 377 |
| CviAII | CATG | 3 cut(s) | 8, 31, 358 |
| CviJI | RGCY | 4 cut(s) | 90, 256, 377, 383 |
| CviKI_1 | RGCY | 4 cut(s) | 90, 256, 377, 383 |
| DdeI | CTNAG | 1 cut(s) | 397 |
| DpnI | GATC | 2 cut(s) | 274, 408 |
| DpnII | GATC | 2 cut(s) | 272, 406 |
| Eam1104I | CTCTTC | 2 cut(s) | 207, 279 |
| EarI | CTCTTC | 2 cut(s) | 207, 279 |
| Eco147I | AGGCCT | 1 cut(s) | 256 |
| Eco57I | CTGAAG | 1 cut(s) | 222 |
| EcoRI | GAATTC | 1 cut(s) | 392 |
| FaeI | CATG | 3 cut(s) | 11, 34, 361 |
| FaiI | YATR | 4 cut(s) | 9, 32, 69, 359 |
| FatI | CATG | 3 cut(s) | 7, 30, 357 |
| Fnu4HI | GCNGC | 3 cut(s) | 330, 378, 381 |
| FokI | GGATG | 2 cut(s) | 128, 168 |
| Fsp4HI | GCNGC | 3 cut(s) | 330, 378, 381 |
| FspBI | CTAG | 1 cut(s) | 252 |
| GluI | GCNGC | 3 cut(s) | 330, 378, 381 |
| HaeIII | GGCC | 1 cut(s) | 256 |
| Hin1II | CATG | 3 cut(s) | 11, 34, 361 |
| HincII | GTYRAC | 1 cut(s) | 132 |
| HindII | GTYRAC | 1 cut(s) | 132 |
| HinfI | GANTC | 1 cut(s) | 248 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 1 cut(s) | 132 |
| Hpy188I | TCNGA | 3 cut(s) | 181, 244, 400 |
| Hpy188III | TCNNGA | 2 cut(s) | 270, 410 |
| Hpy8I | GTNNAC | 1 cut(s) | 132 |
| HpyAV | CCTTC | 1 cut(s) | 267 |
| HpyCH4IV | ACGT | 1 cut(s) | 170 |
| HpyCH4V | TGCA | 3 cut(s) | 332, 357, 380 |
| HpyF3I | CTNAG | 1 cut(s) | 397 |
| HpySE526I | ACGT | 1 cut(s) | 170 |
| Hsp92II | CATG | 3 cut(s) | 11, 34, 361 |
| Kzo9I | GATC | 2 cut(s) | 272, 406 |
| LpnPI | CCDG | 6 cut(s) | 118, 285, 318, 367, 378, 384 |
| Lsp1109I | GCAGC | 3 cut(s) | 316, 364, 392 |
| MaeI | CTAG | 1 cut(s) | 252 |
| MaeII | ACGT | 1 cut(s) | 170 |
| MaeIII | GTNAC | 2 cut(s) | 73, 107 |
| MalI | GATC | 2 cut(s) | 274, 408 |
| MboI | GATC | 2 cut(s) | 272, 406 |
| MboII | GAAGA | 2 cut(s) | 224, 296 |
| MflI | RGATCY | 1 cut(s) | 272 |
| MluCI | AATT | 5 cut(s) | 13, 24, 98, 279, 392 |
| MnlI | CCTC | 4 cut(s) | 208, 212, 280, 311 |
| MroXI | GAANNNNTTC | 2 cut(s) | 171, 234 |
| NdeII | GATC | 2 cut(s) | 272, 406 |
| NlaIII | CATG | 3 cut(s) | 11, 34, 361 |
| NlaIV | GGNNCC | 1 cut(s) | 363 |
| NspI | RCATGY | 1 cut(s) | 11 |
| PaeI | GCATGC | 1 cut(s) | 11 |
| PceI | AGGCCT | 1 cut(s) | 256 |
| PdmI | GAANNNNTTC | 2 cut(s) | 171, 234 |
| PfeI | GAWTC | 1 cut(s) | 248 |
| PkrI | GCNGC | 3 cut(s) | 331, 379, 382 |
| Psp1406I | AACGTT | 1 cut(s) | 170 |
| PspN4I | GGNNCC | 1 cut(s) | 363 |
| PstI | CTGCAG | 2 cut(s) | 334, 382 |
| PstNI | CAGNNNCTG | 1 cut(s) | 377 |
| PsuI | RGATCY | 1 cut(s) | 272 |
| SatI | GCNGC | 3 cut(s) | 330, 378, 381 |
| Sau3AI | GATC | 2 cut(s) | 272, 406 |
| SetI | ASST | 7 cut(s) | 173, 223, 322, 356, 367, 379, 385 |
| SfcI | CTRYAG | 3 cut(s) | 91, 330, 378 |
| SphI | GCATGC | 1 cut(s) | 11 |
| Sse9I | AATT | 5 cut(s) | 13, 24, 98, 279, 392 |
| SseBI | AGGCCT | 1 cut(s) | 256 |
| SspMI | CTAG | 1 cut(s) | 252 |
| StuI | AGGCCT | 1 cut(s) | 256 |
| TaiI | ACGT | 1 cut(s) | 173 |
| TasI | AATT | 5 cut(s) | 13, 24, 98, 279, 392 |
| TfiI | GAWTC | 1 cut(s) | 248 |
| TseI | GCWGC | 3 cut(s) | 329, 377, 380 |
| TspDTI | ATGAA | 3 cut(s) | 180, 198, 243 |
| TspGWI | ACGGA | 1 cut(s) | 128 |
| XapI | RAATTY | 2 cut(s) | 98, 392 |
| XceI | RCATGY | 1 cut(s) | 11 |
| XmnI | GAANNNNTTC | 2 cut(s) | 171, 234 |
| XspI | CTAG | 1 cut(s) | 252 |