tRNA-dihydrouridine(47) synthase NAD(P)( )
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0268431 RchiOBHm_Chr6g0268441 RchiOBHm_Chr6g0271641 |
| rosa_roxburghii | Rroxscaffold_7G00199810 |
| rosa_samantha | Rh6AG161400 Rh6CG159300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 530 |
| AciI | CCGC | 1 cut(s) | 651 |
| AcsI | RAATTY | 2 cut(s) | 299, 560 |
| AcuI | CTGAAG | 2 cut(s) | 390, 604 |
| AcvI | CACGTG | 1 cut(s) | 599 |
| AfaI | GTAC | 2 cut(s) | 52, 635 |
| AgsI | TTSAA | 6 cut(s) | 134, 219, 261, 429, 452, 560 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 444, 476 |
| AleI | CACNNNNGTG | 1 cut(s) | 597 |
| AluBI | AGCT | 7 cut(s) | 102, 139, 389, 497, 545, 551, 610 |
| AluI | AGCT | 7 cut(s) | 102, 139, 389, 497, 545, 551, 610 |
| Alw26I | GTCTC | 1 cut(s) | 203 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 545 |
| AoxI | GGCC | 2 cut(s) | 171, 422 |
| ApeKI | GCWGC | 4 cut(s) | 389, 497, 545, 548 |
| ApoI | RAATTY | 2 cut(s) | 299, 560 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 402 |
| AsuHPI | GGTGA | 2 cut(s) | 157, 482 |
| AsuII | TTCGAA | 1 cut(s) | 673 |
| BbrPI | CACGTG | 1 cut(s) | 599 |
| BbvI | GCAGC | 4 cut(s) | 376, 484, 532, 560 |
| BccI | CCATC | 3 cut(s) | 68, 275, 415 |
| BcoDI | GTCTC | 1 cut(s) | 203 |
| BfaI | CTAG | 1 cut(s) | 420 |
| BfmI | CTRYAG | 3 cut(s) | 292, 498, 546 |
| BfuAI | ACCTGC | 1 cut(s) | 530 |
| BglII | AGATCT | 1 cut(s) | 440 |
| BisI | GCNGC | 4 cut(s) | 390, 498, 546, 549 |
| BlsI | GCNGC | 4 cut(s) | 391, 499, 547, 550 |
| BmiI | GGNNCC | 1 cut(s) | 531 |
| BmrI | ACTGGG | 1 cut(s) | 300 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BmuI | ACTGGG | 1 cut(s) | 300 |
| BoxI | GACNNNNGTC | 2 cut(s) | 361, 653 |
| Bpu14I | TTCGAA | 1 cut(s) | 673 |
| BpuEI | CTTGAG | 1 cut(s) | 170 |
| BsaAI | YACGTR | 1 cut(s) | 599 |
| BsaI | GGTCTC | 1 cut(s) | 203 |
| BsaJI | CCNNGG | 1 cut(s) | 168 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 233, 263 |
| Bse1I | ACTGG | 1 cut(s) | 306 |
| BseDI | CCNNGG | 1 cut(s) | 168 |
| BseGI | GGATG | 1 cut(s) | 322 |
| BseMII | CTCAG | 2 cut(s) | 96, 579 |
| BseNI | ACTGG | 1 cut(s) | 306 |
| BseXI | GCAGC | 4 cut(s) | 376, 484, 532, 560 |
| BshFI | GGCC | 2 cut(s) | 173, 424 |
| BslFI | GGGAC | 1 cut(s) | 369 |
| BsmAI | GTCTC | 1 cut(s) | 203 |
| BsmFI | GGGAC | 1 cut(s) | 369 |
| BsnI | GGCC | 2 cut(s) | 173, 424 |
| Bso31I | GGTCTC | 1 cut(s) | 203 |
| Bsp119I | TTCGAA | 1 cut(s) | 673 |
| Bsp143I | GATC | 1 cut(s) | 440 |
| BspACI | CCGC | 1 cut(s) | 651 |
| BspANI | GGCC | 2 cut(s) | 173, 424 |
| BspCNI | CTCAG | 2 cut(s) | 97, 578 |
| BspLI | GGNNCC | 1 cut(s) | 531 |
| BspMAI | CTGCAG | 2 cut(s) | 502, 550 |
| BspMI | ACCTGC | 1 cut(s) | 530 |
| BspT104I | TTCGAA | 1 cut(s) | 673 |
| BspTNI | GGTCTC | 1 cut(s) | 203 |
| BsrI | ACTGG | 1 cut(s) | 306 |
| BssECI | CCNNGG | 1 cut(s) | 168 |
| BssMI | GATC | 1 cut(s) | 440 |
| BssT1I | CCWWGG | 1 cut(s) | 168 |
| Bst4CI | ACNGT | 1 cut(s) | 360 |
| Bst6I | CTCTTC | 3 cut(s) | 345, 375, 450 |
| BstBAI | YACGTR | 1 cut(s) | 599 |
| BstBI | TTCGAA | 1 cut(s) | 673 |
| BstC8I | GCNNGC | 1 cut(s) | 210 |
| BstDEI | CTNAG | 2 cut(s) | 105, 565 |
| BstF5I | GGATG | 1 cut(s) | 322 |
| BstKTI | GATC | 1 cut(s) | 443 |
| BstMAI | GTCTC | 1 cut(s) | 203 |
| BstMBI | GATC | 1 cut(s) | 440 |
| BstNSI | RCATGY | 1 cut(s) | 212 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 361, 653 |
| BstSFI | CTRYAG | 3 cut(s) | 292, 498, 546 |
| BstV1I | GCAGC | 4 cut(s) | 376, 484, 532, 560 |
| BstX2I | RGATCY | 1 cut(s) | 440 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 313 |
| BstYI | RGATCY | 1 cut(s) | 440 |
| BsuRI | GGCC | 2 cut(s) | 173, 424 |
| BtsCI | GGATG | 1 cut(s) | 322 |
| BveI | ACCTGC | 1 cut(s) | 530 |
| Cac8I | GCNNGC | 1 cut(s) | 210 |
| CaiI | CAGNNNCTG | 1 cut(s) | 545 |
| Csp6I | GTAC | 2 cut(s) | 51, 634 |
| CviAII | CATG | 7 cut(s) | 18, 36, 202, 209, 232, 313, 526 |
| CviQI | GTAC | 2 cut(s) | 51, 634 |
| DdeI | CTNAG | 2 cut(s) | 105, 565 |
| DpnI | GATC | 1 cut(s) | 442 |
| DpnII | GATC | 1 cut(s) | 440 |
| DraI | TTTAAA | 1 cut(s) | 585 |
| Eam1104I | CTCTTC | 3 cut(s) | 345, 375, 450 |
| EarI | CTCTTC | 3 cut(s) | 345, 375, 450 |
| Eco130I | CCWWGG | 1 cut(s) | 168 |
| Eco147I | AGGCCT | 1 cut(s) | 424 |
| Eco31I | GGTCTC | 1 cut(s) | 203 |
| Eco57I | CTGAAG | 2 cut(s) | 390, 604 |
| Eco72I | CACGTG | 1 cut(s) | 599 |
| EcoRI | GAATTC | 1 cut(s) | 560 |
| EcoT14I | CCWWGG | 1 cut(s) | 168 |
| ErhI | CCWWGG | 1 cut(s) | 168 |
| FaeI | CATG | 7 cut(s) | 21, 39, 205, 212, 235, 316, 529 |
| FaqI | GGGAC | 1 cut(s) | 369 |
| FatI | CATG | 7 cut(s) | 17, 35, 201, 208, 231, 312, 525 |
| Fnu4HI | GCNGC | 4 cut(s) | 390, 498, 546, 549 |
| FokI | GGATG | 1 cut(s) | 329 |
| Fsp4HI | GCNGC | 4 cut(s) | 390, 498, 546, 549 |
| FspBI | CTAG | 1 cut(s) | 420 |
| GluI | GCNGC | 4 cut(s) | 390, 498, 546, 549 |
| HaeIII | GGCC | 2 cut(s) | 173, 424 |
| Hin1II | CATG | 7 cut(s) | 21, 39, 205, 212, 235, 316, 529 |
| HincII | GTYRAC | 1 cut(s) | 333 |
| HindII | GTYRAC | 1 cut(s) | 333 |
| HindIII | AAGCTT | 2 cut(s) | 137, 608 |
| HinfI | GANTC | 1 cut(s) | 416 |
| HphI | GGTGA | 2 cut(s) | 157, 482 |
| Hpy166II | GTNNAC | 2 cut(s) | 165, 333 |
| Hpy188I | TCNGA | 5 cut(s) | 106, 412, 568, 623, 659 |
| Hpy188III | TCNNGA | 1 cut(s) | 438 |
| Hpy8I | GTNNAC | 2 cut(s) | 165, 333 |
| HpyAV | CCTTC | 2 cut(s) | 435, 669 |
| HpyCH4III | ACNGT | 1 cut(s) | 360 |
| HpyCH4IV | ACGT | 1 cut(s) | 598 |
| HpyCH4V | TGCA | 6 cut(s) | 71, 500, 525, 548, 641, 683 |
| HpyF3I | CTNAG | 2 cut(s) | 105, 565 |
| HpySE526I | ACGT | 1 cut(s) | 598 |
| Hsp92II | CATG | 7 cut(s) | 21, 39, 205, 212, 235, 316, 529 |
| Kzo9I | GATC | 1 cut(s) | 440 |
| LmnI | GCTCC | 1 cut(s) | 386 |
| LpnPI | CCDG | 6 cut(s) | 319, 453, 486, 535, 546, 552 |
| Lsp1109I | GCAGC | 4 cut(s) | 376, 484, 532, 560 |
| LweI | GCATC | 1 cut(s) | 166 |
| MaeI | CTAG | 1 cut(s) | 420 |
| MaeII | ACGT | 1 cut(s) | 598 |
| MaeIII | GTNAC | 2 cut(s) | 274, 308 |
| MalI | GATC | 1 cut(s) | 442 |
| MboI | GATC | 1 cut(s) | 440 |
| MboII | GAAGA | 6 cut(s) | 108, 362, 392, 464, 467, 656 |
| MflI | RGATCY | 1 cut(s) | 440 |
| MluCI | AATT | 6 cut(s) | 214, 225, 265, 299, 447, 560 |
| MmeI | TCCRAC | 1 cut(s) | 637 |
| MnlI | CCTC | 3 cut(s) | 346, 376, 479 |
| MroXI | GAANNNNTTC | 1 cut(s) | 402 |
| MseI | TTAA | 2 cut(s) | 119, 584 |
| MslI | CAYNNNNRTG | 2 cut(s) | 60, 597 |
| NdeII | GATC | 1 cut(s) | 440 |
| NlaIII | CATG | 7 cut(s) | 21, 39, 205, 212, 235, 316, 529 |
| NlaIV | GGNNCC | 1 cut(s) | 531 |
| NspI | RCATGY | 1 cut(s) | 212 |
| NspV | TTCGAA | 1 cut(s) | 673 |
| OliI | CACNNNNGTG | 1 cut(s) | 597 |
| PaeI | GCATGC | 1 cut(s) | 212 |
| PceI | AGGCCT | 1 cut(s) | 424 |
| PdmI | GAANNNNTTC | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 416 |
| PkrI | GCNGC | 4 cut(s) | 391, 499, 547, 550 |
| PmaCI | CACGTG | 1 cut(s) | 599 |
| PmlI | CACGTG | 1 cut(s) | 599 |
| Ppu21I | YACGTR | 1 cut(s) | 599 |
| PshAI | GACNNNNGTC | 2 cut(s) | 361, 653 |
| PspCI | CACGTG | 1 cut(s) | 599 |
| PspN4I | GGNNCC | 1 cut(s) | 531 |
| PstI | CTGCAG | 2 cut(s) | 502, 550 |
| PstNI | CAGNNNCTG | 1 cut(s) | 545 |
| PsuI | RGATCY | 1 cut(s) | 440 |
| RsaI | GTAC | 2 cut(s) | 52, 635 |
| RsaNI | GTAC | 2 cut(s) | 51, 634 |
| RseI | CAYNNNNRTG | 2 cut(s) | 60, 597 |
| SaqAI | TTAA | 2 cut(s) | 119, 584 |
| SatI | GCNGC | 4 cut(s) | 390, 498, 546, 549 |
| Sau3AI | GATC | 1 cut(s) | 440 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| SfcI | CTRYAG | 3 cut(s) | 292, 498, 546 |
| SfuI | TTCGAA | 1 cut(s) | 673 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 60, 597 |
| SmlI | CTYRAG | 1 cut(s) | 185 |
| SmoI | CTYRAG | 1 cut(s) | 185 |
| SphI | GCATGC | 1 cut(s) | 212 |
| Sse9I | AATT | 6 cut(s) | 214, 225, 265, 299, 447, 560 |
| SseBI | AGGCCT | 1 cut(s) | 424 |
| SsiI | CCGC | 1 cut(s) | 651 |
| SspMI | CTAG | 1 cut(s) | 420 |
| StuI | AGGCCT | 1 cut(s) | 424 |
| StyI | CCWWGG | 1 cut(s) | 168 |
| TaaI | ACNGT | 1 cut(s) | 360 |
| TaiI | ACGT | 1 cut(s) | 601 |
| TaqI | TCGA | 1 cut(s) | 673 |
| TasI | AATT | 6 cut(s) | 214, 225, 265, 299, 447, 560 |
| TfiI | GAWTC | 1 cut(s) | 416 |
| Tru1I | TTAA | 2 cut(s) | 119, 584 |
| Tru9I | TTAA | 2 cut(s) | 119, 584 |
| TseI | GCWGC | 4 cut(s) | 389, 497, 545, 548 |
| TspDTI | ATGAA | 3 cut(s) | 125, 173, 411 |
| XapI | RAATTY | 2 cut(s) | 299, 560 |
| XceI | RCATGY | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 402 |
| XspI | CTAG | 1 cut(s) | 420 |