Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0020574

Physical Location & Seq

Genomic Coordinates Forward (+)

25184577 .. 25188365

Gene Structure 3789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG161400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAATGGATTAAGCAAAAATGTTCAAAATTTTTTGTGGAAAAATAAAATGAAGTTCACCAAGGCCGATTCCAAACTCAAGGCTCTTGGTCTCATGGGGCATGCCAATTCAAAAATAATTGCCATGTCAAAGGAGAATGGGTTGGTGGTTTCAAAGAATTGTGATGTTACTGATGGAAATGGCTGTAGTGAATTTCCCAGTAACATGGATGATAAAGTGGAGTTGACTGCTGAAATAAAAGAAGAGGGACGGGTTGATGAAACGTTTCCATCTGATGAAATGGAGTTGTCTGCTGAAGTAAAAGAAGAGGGAGCTGCTAATGAAACATTTCCATCTGACGATTCTAGGCCTTCAAAGAAGTCAAGATCTGTAATTGAAGAGAAGTTTGGTTCTGGTGAAGCAGATTATGGAGGTGTGAGTGCTGCAGGAAAAGTTGTGGGGCAAACCTGCATGGAACCTGAACCAGAAGCTGCAGCTAACATTGAATTCTCAGAGAATGATAGAAGTTTAAAGACACACCCACGTGAAAAGAAGCTTATTGACTTCAGAGAAAAGTTGTACCTTGCACCTTTGACCGCAGTCGGAAATCTTCCATTTCGAAGGGGTCAAGCTTCGGAATGGGCCCTGCTGAGGAGACATTCATCTGAGGATTTGTTTGGCGTTCAGATATGTGGGGCATATCCAGACACCGTAGCACGCACTGTTGAACTTATAGAACAGGAATGTACCGTAGACTTCATTGATATAAATATGGGGTGCCCAATAGATATTGTTGTGAACAAGGGTGCTGGCTCATCTCTTCTAACAAAACCAATGCGAATGAAAGGCATTGTGCAAGCAGCTTCTGGTACAGTTGACATTCCTATAACTATCAAGGTCCGCACAGCCTATTTTGAGGGGAAAAATCGCATTGACTCACTTATTGCTGACATGGGTAACTGGGGAACCAGTGCAGTAACAATACTTGGTCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002943 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016491 GO:0016627 GO:0017150 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055114 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dus zf-CCCH

Protein Analysis

325

Amino Acids

35.44

Weight (kDa)

5.22

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dus	PF01207	214 - 325	4.9e-21	Dihydrouridine synthase (Dus)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020574)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0268431 RchiOBHm_Chr6g0268441 RchiOBHm_Chr6g0271641
rosa_roxburghii	Rroxscaffold_7G00199810
rosa_samantha	Rh6AG161400 Rh6CG159300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
AccB1I	GGYRCC	1 cut(s)	756
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	2 cut(s)	576, 880
AclI	AACGTT	1 cut(s)	263
AcsI	RAATTY	3 cut(s)	28, 191, 485
AcuI	CTGAAG	2 cut(s)	315, 529
AcvI	CACGTG	1 cut(s)	524
AfaI	GTAC	3 cut(s)	560, 727, 850
AfiI	CCNNNNNNNGG	1 cut(s)	630
AgsI	TTSAA	7 cut(s)	26, 111, 153, 354, 377, 485, 707
AjuI	GAANNNNNNNTTGG	2 cut(s)	369, 401
AleI	CACNNNNGTG	1 cut(s)	522
AluBI	AGCT	6 cut(s)	314, 470, 476, 535, 611, 842
AluI	AGCT	6 cut(s)	314, 470, 476, 535, 611, 842
Alw26I	GTCTC	2 cut(s)	95, 628
AlwNI	CAGNNNCTG	2 cut(s)	470, 845
AoxI	GGCC	3 cut(s)	63, 347, 621
ApaI	GGGCCC	1 cut(s)	625
ApeKI	GCWGC	5 cut(s)	314, 422, 470, 473, 839
ApoI	RAATTY	3 cut(s)	28, 191, 485
Asp700I	GAANNNNTTC	2 cut(s)	264, 327
AspS9I	GGNCC	3 cut(s)	621, 622, 877
AsuHPI	GGTGA	2 cut(s)	49, 407
AsuII	TTCGAA	1 cut(s)	598
AvaII	GGWCC	1 cut(s)	877
BaeGI	GKGCMC	2 cut(s)	625, 761
BanI	GGYRCC	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	625
BbrPI	CACGTG	1 cut(s)	524
BbvCI	CCTCAGC	1 cut(s)	629
BbvI	GCAGC	5 cut(s)	301, 409, 457, 485, 851
BccI	CCATC	3 cut(s)	167, 277, 340
BcoDI	GTCTC	2 cut(s)	95, 628
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	3 cut(s)	184, 423, 471
BfuAI	ACCTGC	1 cut(s)	455
BglII	AGATCT	1 cut(s)	365
BisI	GCNGC	5 cut(s)	315, 423, 471, 474, 840
BlsI	GCNGC	5 cut(s)	316, 424, 472, 475, 841
Bme18I	GGWCC	1 cut(s)	877
BmgT120I	GGNCC	3 cut(s)	621, 622, 877
BmiI	GGNNCC	4 cut(s)	456, 623, 758, 946
BmrI	ACTGGG	2 cut(s)	192, 949
BmuI	ACTGGG	2 cut(s)	192, 949
BoxI	GACNNNNGTC	1 cut(s)	578
Bpu10I	CCTNAGC	1 cut(s)	629
Bpu14I	TTCGAA	1 cut(s)	598
BpuEI	CTTGAG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
Bse1I	ACTGG	3 cut(s)	198, 944, 948
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseMII	CTCAG	3 cut(s)	504, 620, 636
BseNI	ACTGG	3 cut(s)	198, 944, 948
BseRI	GAGGAG	1 cut(s)	646
BseSI	GKGCMC	2 cut(s)	625, 761
BseXI	GCAGC	5 cut(s)	301, 409, 457, 485, 851
BsgI	GTGCAG	1 cut(s)	972
BshFI	GGCC	3 cut(s)	65, 349, 623
BshNI	GGYRCC	1 cut(s)	756
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmAI	GTCTC	2 cut(s)	95, 628
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	3 cut(s)	65, 349, 623
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	598
Bsp120I	GGGCCC	1 cut(s)	621
Bsp1286I	GDGCHC	2 cut(s)	625, 761
Bsp143I	GATC	2 cut(s)	365, 971
BspACI	CCGC	2 cut(s)	576, 880
BspANI	GGCC	3 cut(s)	65, 349, 623
BspCNI	CTCAG	3 cut(s)	503, 621, 637
BspHI	TCATGA	1 cut(s)	974
BspLI	GGNNCC	4 cut(s)	456, 623, 758, 946
BspMAI	CTGCAG	2 cut(s)	427, 475
BspMI	ACCTGC	1 cut(s)	455
BspT104I	TTCGAA	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	756
BspTNI	GGTCTC	1 cut(s)	95
BsrI	ACTGG	3 cut(s)	198, 944, 948
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	365, 971
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	4 cut(s)	691, 703, 730, 853
Bst6I	CTCTTC	4 cut(s)	237, 300, 372, 804
BstBAI	YACGTR	1 cut(s)	524
BstBI	TTCGAA	1 cut(s)	598
BstC8I	GCNNGC	4 cut(s)	102, 697, 790, 837
BstDEI	CTNAG	3 cut(s)	490, 629, 645
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	2 cut(s)	368, 974
BstMAI	GTCTC	2 cut(s)	95, 628
BstMBI	GATC	2 cut(s)	365, 971
BstNSI	RCATGY	1 cut(s)	104
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSFI	CTRYAG	3 cut(s)	184, 423, 471
BstSLI	GKGCMC	2 cut(s)	625, 761
BstV1I	GCAGC	5 cut(s)	301, 409, 457, 485, 851
BstX2I	RGATCY	1 cut(s)	365
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	3 cut(s)	65, 349, 623
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	699, 955
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	4 cut(s)	102, 697, 790, 837
CaiI	CAGNNNCTG	2 cut(s)	470, 845
CciI	TCATGA	1 cut(s)	974
Cfr13I	GGNCC	3 cut(s)	621, 622, 877
Csp6I	GTAC	3 cut(s)	559, 726, 849
CviAII	CATG	7 cut(s)	94, 101, 124, 205, 451, 931, 975
CviQI	GTAC	3 cut(s)	559, 726, 849
DdeI	CTNAG	3 cut(s)	490, 629, 645
DpnI	GATC	2 cut(s)	367, 973
DpnII	GATC	2 cut(s)	365, 971
DraI	TTTAAA	1 cut(s)	510
Eam1104I	CTCTTC	4 cut(s)	237, 300, 372, 804
EarI	CTCTTC	4 cut(s)	237, 300, 372, 804
Eco130I	CCWWGG	1 cut(s)	60
Eco147I	AGGCCT	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	625
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	877
Eco57I	CTGAAG	2 cut(s)	315, 529
Eco72I	CACGTG	1 cut(s)	524
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRI	GAATTC	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	7 cut(s)	97, 104, 127, 208, 454, 934, 978
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	7 cut(s)	93, 100, 123, 204, 450, 930, 974
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	5 cut(s)	315, 423, 471, 474, 840
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	5 cut(s)	315, 423, 471, 474, 840
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	5 cut(s)	315, 423, 471, 474, 840
HaeIII	GGCC	3 cut(s)	65, 349, 623
Hin1II	CATG	7 cut(s)	97, 104, 127, 208, 454, 934, 978
HincII	GTYRAC	2 cut(s)	225, 856
HindII	GTYRAC	2 cut(s)	225, 856
HindIII	AAGCTT	2 cut(s)	533, 609
HinfI	GANTC	3 cut(s)	68, 341, 914
HphI	GGTGA	2 cut(s)	49, 407
Hpy166II	GTNNAC	5 cut(s)	57, 225, 733, 778, 856
Hpy188I	TCNGA	8 cut(s)	274, 337, 493, 548, 584, 616, 646, 666
Hpy188III	TCNNGA	3 cut(s)	363, 683, 975
Hpy8I	GTNNAC	5 cut(s)	57, 225, 733, 778, 856
HpyAV	CCTTC	2 cut(s)	360, 594
HpyCH4III	ACNGT	4 cut(s)	691, 703, 730, 853
HpyCH4IV	ACGT	2 cut(s)	263, 523
HpyCH4V	TGCA	6 cut(s)	425, 450, 473, 566, 835, 953
HpyF3I	CTNAG	3 cut(s)	490, 629, 645
HpySE526I	ACGT	2 cut(s)	263, 523
Hsp92II	CATG	7 cut(s)	97, 104, 127, 208, 454, 934, 978
Kzo9I	GATC	2 cut(s)	365, 971
LmnI	GCTCC	1 cut(s)	311
Lsp1109I	GCAGC	5 cut(s)	301, 409, 457, 485, 851
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	263, 523
MaeIII	GTNAC	4 cut(s)	166, 200, 935, 955
MalI	GATC	2 cut(s)	367, 973
MboI	GATC	2 cut(s)	365, 971
MboII	GAAGA	5 cut(s)	254, 317, 389, 581, 791
MflI	RGATCY	1 cut(s)	365
MhlI	GDGCHC	2 cut(s)	625, 761
MluCI	AATT	7 cut(s)	28, 106, 117, 157, 191, 372, 485
MlyI	GAGTC	1 cut(s)	908
MmeI	TCCRAC	1 cut(s)	562
MnlI	CCTC	6 cut(s)	238, 301, 404, 624, 640, 889
MroXI	GAANNNNTTC	2 cut(s)	264, 327
MseI	TTAA	2 cut(s)	11, 509
MslI	CAYNNNNRTG	1 cut(s)	522
NdeII	GATC	2 cut(s)	365, 971
NlaIII	CATG	7 cut(s)	97, 104, 127, 208, 454, 934, 978
NlaIV	GGNNCC	4 cut(s)	456, 623, 758, 946
NspI	RCATGY	1 cut(s)	104
NspV	TTCGAA	1 cut(s)	598
OliI	CACNNNNGTG	1 cut(s)	522
PaeI	GCATGC	1 cut(s)	104
PagI	TCATGA	1 cut(s)	974
PceI	AGGCCT	1 cut(s)	349
PdmI	GAANNNNTTC	2 cut(s)	264, 327
PfeI	GAWTC	2 cut(s)	68, 341
PkrI	GCNGC	5 cut(s)	316, 424, 472, 475, 841
PleI	GAGTC	1 cut(s)	908
PmaCI	CACGTG	1 cut(s)	524
PmlI	CACGTG	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	908
Ppu21I	YACGTR	1 cut(s)	524
PshAI	GACNNNNGTC	1 cut(s)	578
Psp1406I	AACGTT	1 cut(s)	263
PspCI	CACGTG	1 cut(s)	524
PspN4I	GGNNCC	4 cut(s)	456, 623, 758, 946
PspOMI	GGGCCC	1 cut(s)	621
PspPI	GGNCC	3 cut(s)	621, 622, 877
PstI	CTGCAG	2 cut(s)	427, 475
PstNI	CAGNNNCTG	2 cut(s)	470, 845
PsuI	RGATCY	1 cut(s)	365
RsaI	GTAC	3 cut(s)	560, 727, 850
RsaNI	GTAC	3 cut(s)	559, 726, 849
RseI	CAYNNNNRTG	1 cut(s)	522
SaqAI	TTAA	2 cut(s)	11, 509
SatI	GCNGC	5 cut(s)	315, 423, 471, 474, 840
Sau3AI	GATC	2 cut(s)	365, 971
Sau96I	GGNCC	3 cut(s)	621, 622, 877
SchI	GAGTC	1 cut(s)	908
SduI	GDGCHC	2 cut(s)	625, 761
SfcI	CTRYAG	3 cut(s)	184, 423, 471
SfuI	TTCGAA	1 cut(s)	598
SinI	GGWCC	1 cut(s)	877
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	104
Sse9I	AATT	7 cut(s)	28, 106, 117, 157, 191, 372, 485
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	576, 880
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	349
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	4 cut(s)	691, 703, 730, 853
TaiI	ACGT	2 cut(s)	266, 526
TaqI	TCGA	2 cut(s)	598, 970
TasI	AATT	7 cut(s)	28, 106, 117, 157, 191, 372, 485
TfiI	GAWTC	2 cut(s)	68, 341
Tru1I	TTAA	2 cut(s)	11, 509
Tru9I	TTAA	2 cut(s)	11, 509
TscAI	CASTG	2 cut(s)	706, 955
TseI	GCWGC	5 cut(s)	314, 422, 470, 473, 839
TspDTI	ATGAA	8 cut(s)	17, 65, 273, 291, 336, 630, 727, 836
TspRI	CASTG	2 cut(s)	706, 955
VpaK11BI	GGWCC	1 cut(s)	877
XapI	RAATTY	3 cut(s)	28, 191, 485
XceI	RCATGY	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	732
XmnI	GAANNNNTTC	2 cut(s)	264, 327
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.