RchiOBHm_Chr6g0285601

Protein of unknown function (DUF3741)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
48935854 .. 48941549
5696 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25618

Sequence Viewer

Length: 2958 bp
ATGAAGGGGATGCATAGCAGCAAAGCGCACAATGTTGATAAGCCCTTCCCGGGATGCCTGGGAAGAATGGTCAACCTCTTTGATACCGGGGTTTCTAGAAACAAGCTGCTCACGGATAAACCCCACCGAGATGGCTCTTCACTCTCAAGGAGTCAATCAGATGTGGTAACAATGCTGGGTTCCCCCTTTGGAGAACAAATAGAGGATAAAGTGATTGTTTCAGAGTTGAGGAGAAGTTCATCAAACAATAAAACAAATGGAACACCGATAAAGATGCTTTTAGACCAAGAAATGTCAAAAGAGGTGGAAACTAAGAAGAATCCACCTAATGTAGTTGCCAAGTTGATGGGTCTTGATTCTTTCCCACGACAACAGCCTGATTCAACTGCACAAAGAAGTAATGCAAGCAATTATTCACAATGTACTAATAATCATTCCAGTGTACCATTGGGATGTTGGCAGCAAGAAGATGAGTTTTTGGACAAGAGAATGCAGCATGAATTTCATCAGTGTCCGGAGCAGAATGATTACAAGGATGTTTATGAAGTATGGCAGCAACCTCAGAAGACAAGTTACGGAAGAAATAAGTCACCACAGAAGGGAAGGTATAATGAAAAGATTAATGAGAAGCAGATGGATCTTGTTCGTCAGAAGTTCATGGAAGCCAAACGCTTGGCTACAGATGAGAGGCTTCGCCAATCCAAAGAATTCCAAGATGCACTCGAAGTATTAAGTTCCAATAAAGATTTGTTTCTTACGTTTCTGCAAGAACCAAATTCCTTGTTTTCTCAACATCTATATGAATTACAATCTCTTCCTCCACCTACAGAGACAAAGCGAATCACTGTTCTTAGACCTACAAAGATGGTTTCAAATGACAATTTTGCGGGAGCAGGGAACAAGAGTGATAAACAGACAAAGAAGTCATCTCAGGTATGTCAGGCAGCGTGGGAAAGCCACCATTTATACTCTCCTACCATTGCTGATCAGAAAGTTGATGAATATCCTGCTCCAGCAACTCGGATAGTGGTGTTGAGGCCTAGCCCTGGGAAGACTCAGGATGGTAAGGCCATGGGTTCTTCCCCTACCTCATCACCAAGATTACATGGTGAAAACTTCTATGAGGAGCATGAAGATGATGAGGTGCAAGAATCAGTAGAAGTTGCAGAGGAGATCACACAGACAATGCGTGATAATTCGATGGGCCACCGGAGGGTTGAAACTTTGCTTTCCTCTGTCTTTTCCAATGGTTATACGGGAGATGAGAGTTCGTTTCACAAATCAGAAAATGAATATGCAGCTGGAAATCTCAGTGACTCAGAAGTCATGTCACCATCTTTTAGGCATACGTGGGATCACATTAATGGGTTTGGCAGCCCTTTTTCTTCTTCTTCCTTCAGTCGCATGTCATGTTCTCCAGAGTCATCTGTATGCAGAGAAGCCAAGAAGCGACTTTCTGAAAGATGGGCCATGATGGCATTAAATGGAAATTCTCAGGAGCAAAGACATGCCCGAAGGAGCTCTAGTACATTAGGTGAGATGCTTGCTCTATCAGAGGTTAAGAAGTCAACAACATCTGAGGATGAGATTAGTCACAAGGAACAAGAACGAAGGGAATCAGTTTCATGCTTGATTAGTGATTCAAGTAAGGAAGAGCTGGTTGATTCTCCTAGTCTTTTGAGGTCGAAATCTCTCCCTGTATCTTCTGCGGTATTTAGCAACCGGATCAACATTGAAGTTTCAGATCATGAGGCGGGGAAGATAGATGTTCCCAAAGAGCTGAATAAGGCAAAGAGCATGAAGTCATCATTGAAAGGGAAAGTCTCAAGTTTATTTTTCTCTAGAAATAAGAAATCAAATAAAGAGAAATCTGAGGCATTTCGAGCAAACAAGGAATCTCAATCTTCCTTTTCTGAACAATTAAGTTCTCTGGTTCGTCCGGGAATGATTAGTGATGATGCATCTCAGTGTTCCAATGATGGTGGATTTGAAGGGTGTTTCTCTCCTGCTTTATGTGGTGCTTCAGGAAAAGACTCTCCAGTTGTAACAAACATTGAACAAAAACAAGGGGCAGCTCCATGGGAGGCAGGGTTGTCTTTGGCAAAGCCTGTGGCGCCTGGAAATGTTGGTGAGAATCAGGACCAGCCAAGTCCAATATCAGTTCTAGAACCACCATTTGTAGAGGATGACAATACTATTCAGGAATTTTCTAGGTTTTTGAAGCCAGACCACCTAGGAAGACATCATAAGTCTAACTTGATTGACAAATCACCACCAATAGGATCAATTGCTCGGACCCTGTCATGGGACGAATCTTGTGCAGAGACTGCAACACCATATGGTCTATTAAAATCGCCTTCAGTTTCCACAAGCATTGAGGAAGAAGAACAAGACTGGCAAGCCATTGTCCAAACTCTTTTATCAGCAGCCGGCCTCGATGGTGAGCTGCAGTGTGATTCGTTTTTCGGTAAATGGCATTCGCTTGAAAGTCCTTTGGACCCATCTCTCCGAGATAAGTACGCCAACCCGGATGACAAAGAGCTTTTGCACGAGGCAAAGAGAAGGAAATGGCGATCAAGTCGGAAGCTCGTATTCGATTGTGTTAATGCAGCCCTAGTGGACATCACTGGTTACGGGTCAGCAGACAGCAGCAGCACAAGGACCGTTTCGTGCAGTGGGGCCCACGACAGGTTCTTGGAGGGCGATTCCCCCCTATTGGCAGACCGCGTATGGTCCTGGGTGAAGGAATGGTTTTTGAGTGAGGTGAGGTGTGTTCCAGAGGATGGTGGGGACATCAACAGCCTGGTGGTGGAGAGGGTGGTGAAGAAGGAGGTTGTGGGGAGAGGGTGGCCTGAACAAATGAGAAATGAAATTGACATTGTAAGGAAGGATATAGAAGGGAAGTTGCTGCAAGAGCTTGTGGAGGAGGCTGTGGTTGATCTGACAGGGAGGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

985

Amino Acids

109.98

Weight (kDa)

5.72

Isoelectric Point (pI)

64.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 108 - 125 3.7e-06 DUF761-associated sequence motif
DUF3741 PF12552 216 - 260 1e-23 Protein of unknown function (DUF3741)
DUF4378 PF14309 803 - 976 2e-29 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 922, 1322
AccB1I GGYRCC 1 cut(s) 2113
AccB7I CCANNNNNTGG 1 cut(s) 2783
AccII CGCG 1 cut(s) 2727
AccIII TCCGGA 1 cut(s) 514
AciI CCGC 4 cut(s) 887, 1709, 1754, 2725
AclWI GGATC 4 cut(s) 645, 1362, 1733, 2290
AcsI RAATTY 5 cut(s) 500, 707, 775, 1489, 2204
AcuI CTGAAG 3 cut(s) 1381, 2007, 2343
AcyI GRCGYC 1 cut(s) 2114
AfaI GTAC 4 cut(s) 424, 444, 1528, 2519
AjnI CCWGG 5 cut(s) 57, 1045, 2116, 2735, 2802
Alw21I GWGCWC 1 cut(s) 1523
Alw26I GTCTC 3 cut(s) 824, 1828, 2318
AlwI GGATC 4 cut(s) 645, 1362, 1733, 2290
AlwNI CAGNNNCTG 1 cut(s) 2327
Ama87I CYCGRG 1 cut(s) 49
Aor13HI TCCGGA 1 cut(s) 514
AoxI GGCC 7 cut(s) 1037, 1068, 1204, 1467, 2431, 2679, 2849
ApaI GGGCCC 1 cut(s) 2683
ApoI RAATTY 5 cut(s) 500, 707, 775, 1489, 2204
AseI ATTAAT 2 cut(s) 621, 1362
AspA2I CCTAGG 1 cut(s) 2233
AspLEI GCGC 2 cut(s) 28, 2116
AspS9I GGNCC 9 cut(s) 1204, 1467, 2140, 2295, 2497, 2661, 2679, 2680, 2733
AsuC2I CCSGG 5 cut(s) 50, 51, 88, 1941, 2528
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 5 cut(s) 2140, 2295, 2497, 2661, 2733
AvrII CCTAGG 1 cut(s) 2233
BaeGI GKGCMC 1 cut(s) 2683
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BanI GGYRCC 1 cut(s) 2113
BanII GRGCYC 2 cut(s) 1523, 2683
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
BauI CACGAG 1 cut(s) 2549
BbsI GAAGAC 3 cut(s) 572, 1058, 2245
Bbv12I GWGCWC 1 cut(s) 1523
BcgI CGANNNNNNTGC 4 cut(s) 256, 290, 2300, 2334
BciT130I CCWGG 5 cut(s) 59, 1047, 2118, 2737, 2804
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 5 cut(s) 50, 51, 88, 1941, 2528
BcoDI GTCTC 3 cut(s) 824, 1828, 2318
BfaI CTAG 9 cut(s) 96, 1041, 1524, 1671, 1842, 2165, 2211, 2234, 2615
BfmI CTRYAG 3 cut(s) 678, 825, 2447
BfoI RGCGCY 1 cut(s) 2117
BglI GCCNNNNNGGC 1 cut(s) 1475
BlnI CCTAGG 1 cut(s) 2233
Bme18I GGWCC 5 cut(s) 2140, 2295, 2497, 2661, 2733
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 9 cut(s) 1204, 1467, 2140, 2295, 2497, 2661, 2679, 2680, 2733
BmiI GGNNCC 6 cut(s) 181, 2115, 2297, 2499, 2680, 2681
BmsI GCATC 6 cut(s) 44, 264, 706, 1530, 1948, 1970
BpiI GAAGAC 3 cut(s) 572, 1058, 2245
BpmI CTGGAG 3 cut(s) 996, 1401, 2022
BpuEI CTTGAG 2 cut(s) 130, 1810
BpuMI CCSGG 5 cut(s) 50, 51, 88, 1941, 2528
BsaAI YACGTR 1 cut(s) 1350
BsaBI GATNNNNATC 1 cut(s) 1002
BsaHI GRCGYC 1 cut(s) 2114
BsaJI CCNNGG 9 cut(s) 49, 58, 87, 1045, 1046, 1071, 2078, 2233, 2736
BsaWI WCCGGW 3 cut(s) 514, 1209, 1722
BsaXI ACNNNNNCTCC 4 cut(s) 1510, 1540, 2075, 2105
Bse118I RCCGGY 1 cut(s) 2429
Bse1I ACTGG 4 cut(s) 438, 2039, 2399, 2632
Bse3DI GCAATG 1 cut(s) 978
Bse8I GATNNNNATC 1 cut(s) 1002
BseAI TCCGGA 1 cut(s) 514
BseBI CCWGG 5 cut(s) 59, 1047, 2118, 2737, 2804
BseDI CCNNGG 9 cut(s) 49, 58, 87, 1045, 1046, 1071, 2078, 2233, 2736
BseGI GGATG 9 cut(s) 15, 59, 458, 541, 1066, 1588, 2191, 2536, 2788
BseJI GATNNNNATC 1 cut(s) 1002
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 9 cut(s) 575, 944, 1070, 1324, 1332, 1508, 1569, 1863, 1979
BseNI ACTGG 4 cut(s) 438, 2039, 2399, 2632
BseRI GAGGAG 4 cut(s) 244, 1139, 1184, 2939
BseSI GKGCMC 1 cut(s) 2683
BseYI CCCAGC 1 cut(s) 175
BsgI GTGCAG 3 cut(s) 372, 2340, 2692
Bsh1236I CGCG 1 cut(s) 2727
BshFI GGCC 7 cut(s) 1039, 1070, 1206, 1469, 2433, 2681, 2851
BshNI GGYRCC 1 cut(s) 2113
BsiHKAI GWGCWC 1 cut(s) 1523
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 8 cut(s) 50, 87, 515, 1210, 1723, 1940, 2430, 2528
BslFI GGGAC 2 cut(s) 2321, 2804
BsmAI GTCTC 3 cut(s) 824, 1828, 2318
BsmFI GGGAC 2 cut(s) 2321, 2804
BsmI GAATGC 2 cut(s) 495, 2476
BsnI GGCC 7 cut(s) 1039, 1070, 1206, 1469, 2433, 2681, 2851
BsoBI CYCGRG 1 cut(s) 49
Bsp120I GGGCCC 1 cut(s) 2679
Bsp1286I GDGCHC 2 cut(s) 1523, 2683
Bsp13I TCCGGA 1 cut(s) 514
Bsp143I GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
Bsp19I CCATGG 2 cut(s) 1071, 2078
BspACI CCGC 4 cut(s) 887, 1709, 1754, 2725
BspANI GGCC 7 cut(s) 1039, 1070, 1206, 1469, 2433, 2681, 2851
BspCNI CTCAG 9 cut(s) 574, 943, 1069, 1323, 1331, 1507, 1570, 1864, 1978
BspEI TCCGGA 1 cut(s) 514
BspFNI CGCG 1 cut(s) 2727
BspHI TCATGA 1 cut(s) 1747
BspLI GGNNCC 6 cut(s) 181, 2115, 2297, 2499, 2680, 2681
BspMAI CTGCAG 1 cut(s) 2451
BspPI GGATC 4 cut(s) 645, 1362, 1733, 2290
BspQI GCTCTTC 2 cut(s) 142, 1647
BspT107I GGYRCC 1 cut(s) 2113
BsrDI GCAATG 1 cut(s) 978
BsrFI RCCGGY 1 cut(s) 2429
BsrI ACTGG 4 cut(s) 438, 2039, 2399, 2632
BssAI RCCGGY 1 cut(s) 2429
BssECI CCNNGG 9 cut(s) 49, 58, 87, 1045, 1046, 1071, 2078, 2233, 2736
BssMI GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
BssNI GRCGYC 1 cut(s) 2114
BssSI CACGAG 1 cut(s) 2549
BssT1I CCWWGG 3 cut(s) 1071, 2078, 2233
Bst2BI CACGAG 1 cut(s) 2549
Bst2UI CCWGG 5 cut(s) 59, 1047, 2118, 2737, 2804
Bst4CI ACNGT 2 cut(s) 847, 2665
Bst6I CTCTTC 3 cut(s) 142, 819, 1647
BstACI GRCGYC 1 cut(s) 2114
BstAPI GCANNNNNTGC 1 cut(s) 2327
BstBAI YACGTR 1 cut(s) 1350
BstC8I GCNNGC 4 cut(s) 406, 1545, 2400, 2431
BstDSI CCRYGG 2 cut(s) 1071, 2078
BstF5I GGATG 9 cut(s) 15, 59, 458, 541, 1066, 1588, 2191, 2536, 2788
BstFNI CGCG 1 cut(s) 2727
BstH2I RGCGCY 1 cut(s) 2117
BstHHI GCGC 2 cut(s) 28, 2116
BstKTI GATC 9 cut(s) 640, 988, 1176, 1357, 1728, 1747, 2285, 2576, 2941
BstMAI GTCTC 3 cut(s) 824, 1828, 2318
BstMBI GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
BstMWI GCNNNNNNNGC 5 cut(s) 1475, 1883, 2113, 2327, 2914
BstNI CCWGG 5 cut(s) 59, 1047, 2118, 2737, 2804
BstNSI RCATGY 2 cut(s) 1408, 1511
BstSFI CTRYAG 3 cut(s) 678, 825, 2447
BstSLI GKGCMC 1 cut(s) 2683
BstUI CGCG 1 cut(s) 2727
BstV2I GAAGAC 3 cut(s) 572, 1058, 2245
BstX2I RGATCY 1 cut(s) 637
BstXI CCANNNNNNTGG 3 cut(s) 131, 346, 673
BstYI RGATCY 1 cut(s) 637
BsuRI GGCC 7 cut(s) 1039, 1070, 1206, 1469, 2433, 2681, 2851
BtgI CCRYGG 2 cut(s) 1071, 2078
BtsCI GGATG 9 cut(s) 15, 59, 458, 541, 1066, 1588, 2191, 2536, 2788
BtsI GCAGTG 2 cut(s) 2456, 2680
BtsIMutI CAGTG 8 cut(s) 445, 515, 843, 1318, 1973, 2456, 2625, 2680
Cac8I GCNNGC 4 cut(s) 406, 1545, 2400, 2431
CaiI CAGNNNCTG 1 cut(s) 2327
CciI TCATGA 1 cut(s) 1747
CfoI GCGC 2 cut(s) 28, 2116
Cfr10I RCCGGY 1 cut(s) 2429
Cfr13I GGNCC 9 cut(s) 1204, 1467, 2140, 2295, 2497, 2661, 2679, 2680, 2733
Cfr9I CCCGGG 1 cut(s) 49
Csp6I GTAC 4 cut(s) 423, 443, 1527, 2518
CspCI CAANNNNNGTGG 8 cut(s) 285, 320, 1963, 1998, 2091, 2126, 2356, 2391
CviQI GTAC 4 cut(s) 423, 443, 1527, 2518
DinI GGCGCC 1 cut(s) 2115
DpnI GATC 9 cut(s) 639, 987, 1175, 1356, 1727, 1746, 2284, 2575, 2940
DpnII GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
DrdI GACNNNNNNGTC 2 cut(s) 922, 1322
DseDI GACNNNNNNGTC 2 cut(s) 922, 1322
Eam1104I CTCTTC 3 cut(s) 142, 819, 1647
EarI CTCTTC 3 cut(s) 142, 819, 1647
Ecl136II GAGCTC 1 cut(s) 1521
Eco130I CCWWGG 3 cut(s) 1071, 2078, 2233
Eco147I AGGCCT 1 cut(s) 1039
Eco24I GRGCYC 2 cut(s) 1523, 2683
Eco47I GGWCC 5 cut(s) 2140, 2295, 2497, 2661, 2733
Eco53kI GAGCTC 1 cut(s) 1521
Eco57I CTGAAG 3 cut(s) 1381, 2007, 2343
Eco88I CYCGRG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 1521
EcoO109I RGGNCCY 1 cut(s) 2679
EcoRI GAATTC 1 cut(s) 707
EcoRII CCWGG 5 cut(s) 57, 1045, 2116, 2735, 2802
EcoT14I CCWWGG 3 cut(s) 1071, 2078, 2233
EcoT22I ATGCAT 2 cut(s) 15, 1963
EcoT38I GRGCYC 2 cut(s) 1523, 2683
EgeI GGCGCC 1 cut(s) 2115
EheI GGCGCC 1 cut(s) 2115
ErhI CCWWGG 3 cut(s) 1071, 2078, 2233
FalI AAGNNNNNCTT 2 cut(s) 2240, 2272
FaqI GGGAC 2 cut(s) 2321, 2804
FauI CCCGC 2 cut(s) 880, 1747
FauNDI CATATG 1 cut(s) 2338
FbaI TGATCA 1 cut(s) 985
FokI GGATG 9 cut(s) 22, 66, 465, 548, 1073, 1595, 2198, 2543, 2795
FriOI GRGCYC 2 cut(s) 1523, 2683
FspBI CTAG 9 cut(s) 96, 1041, 1524, 1671, 1842, 2165, 2211, 2234, 2615
GlaI GCGC 2 cut(s) 27, 2115
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 3 cut(s) 996, 1401, 2022
HaeII RGCGCY 1 cut(s) 2117
HaeIII GGCC 7 cut(s) 1039, 1070, 1206, 1469, 2433, 2681, 2851
HapII CCGG 8 cut(s) 50, 87, 515, 1210, 1723, 1940, 2430, 2528
HhaI GCGC 2 cut(s) 28, 2116
Hin1I GRCGYC 1 cut(s) 2114
Hin6I GCGC 2 cut(s) 26, 2114
HinP1I GCGC 2 cut(s) 26, 2114
HincII GTYRAC 2 cut(s) 73, 1569
HindII GTYRAC 2 cut(s) 73, 1569
HpaII CCGG 8 cut(s) 50, 87, 515, 1210, 1723, 1940, 2430, 2528
Hpy166II GTNNAC 4 cut(s) 73, 443, 1569, 2620
Hpy8I GTNNAC 4 cut(s) 73, 443, 1569, 2620
HpyCH4III ACNGT 2 cut(s) 847, 2665
HpyCH4IV ACGT 2 cut(s) 758, 1349
HpyF10VI GCNNNNNNNGC 5 cut(s) 1475, 1883, 2113, 2327, 2914
HpySE526I ACGT 2 cut(s) 758, 1349
Hsp92I GRCGYC 1 cut(s) 2114
HspAI GCGC 2 cut(s) 26, 2114
KasI GGCGCC 1 cut(s) 2113
Kpn2I TCCGGA 1 cut(s) 514
KroI GCCGGC 1 cut(s) 2429
KroNI GCCGGC 1 cut(s) 2431
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
LguI GCTCTTC 2 cut(s) 142, 1647
LmnI GCTCC 7 cut(s) 517, 890, 1015, 1126, 1498, 1518, 2080
LweI GCATC 6 cut(s) 44, 264, 706, 1530, 1948, 1970
MaeI CTAG 9 cut(s) 96, 1041, 1524, 1671, 1842, 2165, 2211, 2234, 2615
MaeII ACGT 2 cut(s) 758, 1349
MaeIII GTNAC 8 cut(s) 166, 572, 588, 1313, 1329, 1592, 2044, 2630
MalI GATC 9 cut(s) 639, 987, 1175, 1356, 1727, 1746, 2284, 2575, 2940
MboI GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
MfeI CAATTG 1 cut(s) 2286
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 2 cut(s) 1523, 2683
Mly113I GGCGCC 1 cut(s) 2114
MlyI GAGTC 5 cut(s) 160, 1048, 1310, 1430, 2027
MmeI TCCRAC 1 cut(s) 2561
Mph1103I ATGCAT 2 cut(s) 15, 1963
MroI TCCGGA 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 2429
MseI TTAA 8 cut(s) 621, 731, 1362, 1481, 1560, 1922, 2348, 2604
MslI CAYNNNNRTG 8 cut(s) 129, 438, 451, 798, 1134, 1362, 1429, 1966
MspA1I CMGCKG 1 cut(s) 1301
MspI CCGG 8 cut(s) 50, 87, 515, 1210, 1723, 1940, 2430, 2528
MunI CAATTG 1 cut(s) 2286
Mva1269I GAATGC 2 cut(s) 495, 2476
MvaI CCWGG 5 cut(s) 59, 1047, 2118, 2737, 2804
MvnI CGCG 1 cut(s) 2727
MwoI GCNNNNNNNGC 5 cut(s) 1475, 1883, 2113, 2327, 2914
NaeI GCCGGC 1 cut(s) 2431
NarI GGCGCC 1 cut(s) 2114
NciI CCSGG 5 cut(s) 50, 51, 88, 1941, 2528
NcoI CCATGG 2 cut(s) 1071, 2078
NdeI CATATG 1 cut(s) 2338
NdeII GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
NgoMIV GCCGGC 1 cut(s) 2429
NlaIV GGNNCC 6 cut(s) 181, 2115, 2297, 2499, 2680, 2681
NmuCI GTSAC 4 cut(s) 588, 1313, 1329, 1592
NsiI ATGCAT 2 cut(s) 15, 1963
NspI RCATGY 2 cut(s) 1408, 1511
PagI TCATGA 1 cut(s) 1747
PasI CCCWGGG 1 cut(s) 1046
PceI AGGCCT 1 cut(s) 1039
PciSI GCTCTTC 2 cut(s) 142, 1647
PctI GAATGC 2 cut(s) 495, 2476
PdiI GCCGGC 1 cut(s) 2431
PflFI GACNNNGTC 1 cut(s) 2299
PflMI CCANNNNNTGG 1 cut(s) 2783
PfoI TCCNGGA 1 cut(s) 1939
PleI GAGTC 5 cut(s) 159, 1048, 1310, 1429, 2027
PluTI GGCGCC 1 cut(s) 2117
PpsI GAGTC 5 cut(s) 159, 1048, 1310, 1429, 2027
Ppu21I YACGTR 1 cut(s) 1350
PshBI ATTAAT 2 cut(s) 621, 1362
Psp124BI GAGCTC 1 cut(s) 1523
Psp6I CCWGG 5 cut(s) 57, 1045, 2116, 2735, 2802
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 5 cut(s) 57, 1045, 2116, 2735, 2802
PspN4I GGNNCC 6 cut(s) 181, 2115, 2297, 2499, 2680, 2681
PspOMI GGGCCC 1 cut(s) 2679
PspPI GGNCC 9 cut(s) 1204, 1467, 2140, 2295, 2497, 2661, 2679, 2680, 2733
PstI CTGCAG 1 cut(s) 2451
PstNI CAGNNNCTG 1 cut(s) 2327
PsuI RGATCY 1 cut(s) 637
PsyI GACNNNGTC 1 cut(s) 2299
PvuII CAGCTG 1 cut(s) 1301
RsaI GTAC 4 cut(s) 424, 444, 1528, 2519
RsaNI GTAC 4 cut(s) 423, 443, 1527, 2518
RseI CAYNNNNRTG 8 cut(s) 129, 438, 451, 798, 1134, 1362, 1429, 1966
SacI GAGCTC 1 cut(s) 1523
SapI GCTCTTC 2 cut(s) 142, 1647
SaqAI TTAA 8 cut(s) 621, 731, 1362, 1481, 1560, 1922, 2348, 2604
Sau3AI GATC 9 cut(s) 637, 985, 1173, 1354, 1725, 1744, 2282, 2573, 2938
Sau96I GGNCC 9 cut(s) 1204, 1467, 2140, 2295, 2497, 2661, 2679, 2680, 2733
SchI GAGTC 5 cut(s) 160, 1048, 1310, 1430, 2027
SduI GDGCHC 2 cut(s) 1523, 2683
SfaNI GCATC 6 cut(s) 44, 264, 706, 1530, 1948, 1970
SfcI CTRYAG 3 cut(s) 678, 825, 2447
SfoI GGCGCC 1 cut(s) 2115
SinI GGWCC 5 cut(s) 2140, 2295, 2497, 2661, 2733
SmaI CCCGGG 1 cut(s) 51
SmiMI CAYNNNNRTG 8 cut(s) 129, 438, 451, 798, 1134, 1362, 1429, 1966
SmlI CTYRAG 2 cut(s) 145, 1825
SmoI CTYRAG 2 cut(s) 145, 1825
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 4 cut(s) 887, 1709, 1754, 2725
SspDI GGCGCC 1 cut(s) 2113
SspMI CTAG 9 cut(s) 96, 1041, 1524, 1671, 1842, 2165, 2211, 2234, 2615
SstI GAGCTC 1 cut(s) 1523
StuI AGGCCT 1 cut(s) 1039
StyI CCWWGG 3 cut(s) 1071, 2078, 2233
TaaI ACNGT 2 cut(s) 847, 2665
TaiI ACGT 2 cut(s) 761, 1352
TaqI TCGA 6 cut(s) 723, 1199, 1685, 1882, 2436, 2595
TatI WGTACW 2 cut(s) 422, 1526
Tru1I TTAA 8 cut(s) 621, 731, 1362, 1481, 1560, 1922, 2348, 2604
Tru9I TTAA 8 cut(s) 621, 731, 1362, 1481, 1560, 1922, 2348, 2604
TscAI CASTG 8 cut(s) 445, 515, 850, 1318, 1973, 2456, 2632, 2680
TseFI GTSAC 4 cut(s) 588, 1313, 1329, 1592
Tsp45I GTSAC 4 cut(s) 588, 1313, 1329, 1592
TspGWI ACGGA 2 cut(s) 128, 591
TspMI CCCGGG 1 cut(s) 49
TspRI CASTG 8 cut(s) 445, 515, 850, 1318, 1973, 2456, 2632, 2680
Tth111I GACNNNGTC 1 cut(s) 2299
Van91I CCANNNNNTGG 1 cut(s) 2783
VpaK11BI GGWCC 5 cut(s) 2140, 2295, 2497, 2661, 2733
VspI ATTAAT 2 cut(s) 621, 1362
XapI RAATTY 5 cut(s) 500, 707, 775, 1489, 2204
XbaI TCTAGA 3 cut(s) 95, 1841, 2164
XceI RCATGY 2 cut(s) 1408, 1511
XcmI CCANNNNNNNNNTGG 2 cut(s) 445, 453
XmaI CCCGGG 1 cut(s) 49
XmaJI CCTAGG 1 cut(s) 2233
XspI CTAG 9 cut(s) 96, 1041, 1524, 1671, 1842, 2165, 2211, 2234, 2615
Zsp2I ATGCAT 2 cut(s) 15, 1963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.