Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004964

Physical Location & Seq

Genomic Coordinates Reverse (-)

27699126 .. 27703736

Gene Structure 4611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0176100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGACGGCGTAGCTGGGCCTGGGCTACTTCGATTTGGCGTCGGCAACACAGTTAAGTGGGTTTATTTCTTTGTGCTTATAATTCAAATTGAATATTGCATAGATGAAACCGCTCAGATTCTGGTTGAGTTATTGGAGGTGGCAATCACATCAATCGTTTTCCTCAAAGGAATTTATCCTGCAGTGGCTGAACTTAATAGATGGAACATGTACTCAAGCTTAAATAAGAGCCATGGAGCACTTCCTTGGACTTCTAGAAATGATATGACTCTGCGTTCTGCAATGGCTGTCGAGTTGTCAATCTTCTTGAATGATAAAAGGTTGCTATCCACACAAGTAAAAGCACCTGCCCAAGCAAGGCAAATGGGAGCACTTAGAGTTTCCATGACAAGTCCAGGACTTATCTATGAGCCTTATGCACCTCGTGAAAAAGTTCCATTTTTTCAAGAGGCTTTAATGGATGAAGCAAGGTTTTGGGGAGCTTTTGGATTATACGCTACAATAAATGTGGGGATGAATTGTGAAACTACTTTAGTATATATGGTTTTGAAGATTTTGGCTCAAAATGGTTATTTCGTTCCTGACATTGTGGTGGCTGCAGTAATTGGAGTTATGACCAGTTGGTCTGTAGGCCCTCTGGTACCTATTTGTGGTCGCTGGTTAGCCAGGTCATCCATTTTGCAACTCTTATTGCATCCTAGTGTGCTAGACTTGGCTCCGTCATCTCAGTTCTTTCCATATAGCACGGCTGCACCTAAGAGAGTTGTCTTCCAGCATACTTTTCTTACTGCAGGTGTCGGCGGCAAAATGGGACAAGAGGCAGCTACACTTGAGGATTCTCCAGTTGAGTCCTTGCTGGAGGTAGCCTACTCCCTTTTCCAAACCTCAATTGCATTTTTGGACTATTCAAATGATATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

306

Amino Acids

33.77

Weight (kDa)

5.46

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20240 AT4G28760 AT4G28760
fragaria_vesca	FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940
malus_domestica	MD05G1183600.v1.1 MD10G1171400.v1.1
prunus_persica	Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1
pyrus_communis	pycom05g16860 pycom10g14780
rosa_chinensis	RchiOBHm_Chr6g0285601
rosa_laevigata	RLG00000012623
rosa_multiflora	Rmu_sc0001356.1_g000026 Rmu_sc0017770.1_g000008
rosa_rugosa	Rorug06G0176000.1 Rorug06G0176100 Rorug06G0176100
rosa_samantha	Rh6AG287400 Rh6BG288800 Rh6CG289900 Rh6DG282600
rosa_wichuraiana	Rw6G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AarI	CACCTGC	2 cut(s)	355, 782
AasI	GACNNNNNNGTC	1 cut(s)	622
Acc36I	ACCTGC	2 cut(s)	355, 782
Acc65I	GGTACC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	640
AccBSI	CCGCTC	1 cut(s)	113
AciI	CCGC	2 cut(s)	111, 801
AcsI	RAATTY	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	39
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	2 cut(s)	212, 642
AfiI	CCNNNNNNNGG	2 cut(s)	357, 650
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	6 cut(s)	86, 92, 310, 446, 550, 909
AjnI	CCWGG	3 cut(s)	19, 394, 665
AluBI	AGCT	4 cut(s)	14, 219, 482, 824
AluI	AGCT	4 cut(s)	14, 219, 482, 824
Alw21I	GWGCWC	2 cut(s)	241, 373
AlwNI	CAGNNNCTG	2 cut(s)	121, 188
AoxI	GGCC	2 cut(s)	17, 631
ApeKI	GCWGC	3 cut(s)	596, 749, 821
ApoI	RAATTY	1 cut(s)	171
Asp700I	GAANNNNTTC	1 cut(s)	432
Asp718I	GGTACC	1 cut(s)	640
AspS9I	GGNCC	2 cut(s)	17, 632
BanI	GGYRCC	1 cut(s)	640
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	760
Bbv12I	GWGCWC	2 cut(s)	241, 373
BbvI	GCAGC	3 cut(s)	583, 736, 833
BccI	CCATC	1 cut(s)	195
BceAI	ACGGC	2 cut(s)	22, 762
BciT130I	CCWGG	3 cut(s)	21, 396, 667
BfaI	CTAG	3 cut(s)	255, 699, 707
BfmI	CTRYAG	4 cut(s)	180, 597, 627, 789
BfuAI	ACCTGC	2 cut(s)	355, 782
BisI	GCNGC	4 cut(s)	597, 750, 802, 822
BlsI	GCNGC	4 cut(s)	598, 751, 803, 823
Bme1390I	CCNGG	3 cut(s)	21, 396, 667
BmgT120I	GGNCC	2 cut(s)	17, 632
BmiI	GGNNCC	2 cut(s)	642, 717
BmrFI	CCNGG	3 cut(s)	21, 396, 667
BmsI	GCATC	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	760
BpmI	CTGGAG	2 cut(s)	825, 878
BpuEI	CTTGAG	2 cut(s)	199, 851
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	20, 232, 245
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 650
Bse1I	ACTGG	2 cut(s)	618, 842
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	3 cut(s)	21, 396, 667
BseDI	CCNNGG	3 cut(s)	20, 232, 245
BseGI	GGATG	4 cut(s)	466, 519, 671, 694
BseLI	CCNNNNNNNGG	2 cut(s)	357, 650
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	128, 740
BseNI	ACTGG	2 cut(s)	618, 842
BseXI	GCAGC	3 cut(s)	583, 736, 833
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	735
BshFI	GGCC	2 cut(s)	19, 633
BshNI	GGYRCC	1 cut(s)	640
BsiHKAI	GWGCWC	2 cut(s)	241, 373
BslFI	GGGAC	1 cut(s)	825
BslI	CCNNNNNNNGG	2 cut(s)	357, 650
BsmFI	GGGAC	1 cut(s)	825
BsnI	GGCC	2 cut(s)	19, 633
Bsp1286I	GDGCHC	2 cut(s)	241, 373
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	2 cut(s)	111, 801
BspANI	GGCC	2 cut(s)	19, 633
BspCNI	CTCAG	2 cut(s)	127, 739
BspLI	GGNNCC	2 cut(s)	642, 717
BspMAI	CTGCAG	3 cut(s)	184, 601, 793
BspMI	ACCTGC	2 cut(s)	355, 782
BspT107I	GGYRCC	1 cut(s)	640
BsrBI	CCGCTC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	618, 842
BssECI	CCNNGG	3 cut(s)	20, 232, 245
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	232, 245
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	3 cut(s)	21, 396, 667
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	4 cut(s)	114, 374, 726, 756
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	4 cut(s)	466, 519, 671, 694
BstNI	CCWGG	3 cut(s)	21, 396, 667
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	3 cut(s)	19, 394, 665
BstSFI	CTRYAG	4 cut(s)	180, 597, 627, 789
BstV1I	GCAGC	3 cut(s)	583, 736, 833
BstV2I	GAAGAC	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	19, 633
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	4 cut(s)	466, 519, 671, 694
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	2 cut(s)	355, 782
CaiI	CAGNNNCTG	2 cut(s)	121, 188
Cfr13I	GGNCC	2 cut(s)	17, 632
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	211, 641
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	3 cut(s)	208, 233, 385
CviQI	GTAC	2 cut(s)	211, 641
DdeI	CTNAG	4 cut(s)	114, 374, 726, 756
DraIII	CACNNNGTG	1 cut(s)	425
DrdI	GACNNNNNNGTC	1 cut(s)	622
DseDI	GACNNNNNNGTC	1 cut(s)	622
Eco130I	CCWWGG	2 cut(s)	232, 245
Eco32I	GATATC	1 cut(s)	916
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRII	CCWGG	3 cut(s)	19, 394, 665
EcoRV	GATATC	1 cut(s)	916
EcoT14I	CCWWGG	2 cut(s)	232, 245
ErhI	CCWWGG	2 cut(s)	232, 245
FaeI	CATG	3 cut(s)	211, 236, 388
FaqI	GGGAC	1 cut(s)	825
FatI	CATG	3 cut(s)	207, 232, 384
Fnu4HI	GCNGC	4 cut(s)	597, 750, 802, 822
FokI	GGATG	4 cut(s)	473, 526, 658, 681
Fsp4HI	GCNGC	4 cut(s)	597, 750, 802, 822
FspBI	CTAG	3 cut(s)	255, 699, 707
GluI	GCNGC	4 cut(s)	597, 750, 802, 822
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	2 cut(s)	825, 878
HaeIII	GGCC	2 cut(s)	19, 633
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	211, 236, 388
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	4 cut(s)	118, 268, 836, 848
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	5 cut(s)	255, 307, 425, 446, 581
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	52
HpyF3I	CTNAG	4 cut(s)	114, 374, 726, 756
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	211, 236, 388
KpnI	GGTACC	1 cut(s)	644
LmnI	GCTCC	4 cut(s)	236, 368, 479, 721
Lsp1109I	GCAGC	3 cut(s)	583, 736, 833
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	3 cut(s)	255, 699, 707
MbiI	CCGCTC	1 cut(s)	113
MboII	GAAGA	3 cut(s)	295, 562, 760
MfeI	CAATTG	1 cut(s)	888
MhlI	GDGCHC	2 cut(s)	241, 373
MluCI	AATT	6 cut(s)	81, 87, 171, 517, 603, 888
MlyI	GAGTC	2 cut(s)	262, 857
MnlI	CCTC	9 cut(s)	130, 173, 432, 442, 645, 811, 826, 853, 895
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	4 cut(s)	54, 195, 221, 455
MslI	CAYNNNNRTG	2 cut(s)	590, 699
MspR9I	CCNGG	3 cut(s)	21, 396, 667
MunI	CAATTG	1 cut(s)	888
MvaI	CCWGG	3 cut(s)	21, 396, 667
NcoI	CCATGG	1 cut(s)	232
NlaIII	CATG	3 cut(s)	211, 236, 388
NlaIV	GGNNCC	2 cut(s)	642, 717
NspI	RCATGY	1 cut(s)	211
PaqCI	CACCTGC	2 cut(s)	355, 782
PciI	ACATGT	1 cut(s)	207
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	118, 836
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	4 cut(s)	598, 751, 803, 823
PleI	GAGTC	2 cut(s)	262, 856
PpsI	GAGTC	2 cut(s)	262, 856
PscI	ACATGT	1 cut(s)	207
PsiI	TTATAA	1 cut(s)	80
Psp6I	CCWGG	3 cut(s)	19, 394, 665
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	3 cut(s)	19, 394, 665
PspN4I	GGNNCC	2 cut(s)	642, 717
PspPI	GGNCC	2 cut(s)	17, 632
PstI	CTGCAG	3 cut(s)	184, 601, 793
PstNI	CAGNNNCTG	2 cut(s)	121, 188
RsaI	GTAC	2 cut(s)	212, 642
RsaNI	GTAC	2 cut(s)	211, 641
RseI	CAYNNNNRTG	2 cut(s)	590, 699
SaqAI	TTAA	4 cut(s)	54, 195, 221, 455
SatI	GCNGC	4 cut(s)	597, 750, 802, 822
Sau96I	GGNCC	2 cut(s)	17, 632
SchI	GAGTC	2 cut(s)	262, 857
ScrFI	CCNGG	3 cut(s)	21, 396, 667
SduI	GDGCHC	2 cut(s)	241, 373
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	4 cut(s)	180, 597, 627, 789
SmiMI	CAYNNNNRTG	2 cut(s)	590, 699
SmlI	CTYRAG	2 cut(s)	214, 830
SmoI	CTYRAG	2 cut(s)	214, 830
Sse9I	AATT	6 cut(s)	81, 87, 171, 517, 603, 888
SsiI	CCGC	2 cut(s)	111, 801
SspI	AATATT	1 cut(s)	95
SspMI	CTAG	3 cut(s)	255, 699, 707
StyD4I	CCNGG	3 cut(s)	19, 394, 665
StyI	CCWWGG	2 cut(s)	232, 245
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	31, 291
TasI	AATT	6 cut(s)	81, 87, 171, 517, 603, 888
TatI	WGTACW	1 cut(s)	210
TauI	GCSGC	1 cut(s)	804
TfiI	GAWTC	2 cut(s)	118, 836
Tru1I	TTAA	4 cut(s)	54, 195, 221, 455
Tru9I	TTAA	4 cut(s)	54, 195, 221, 455
TscAI	CASTG	1 cut(s)	189
TseI	GCWGC	3 cut(s)	596, 749, 821
TspDTI	ATGAA	3 cut(s)	120, 477, 530
TspGWI	ACGGA	1 cut(s)	708
TspRI	CASTG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	171
XbaI	TCTAGA	1 cut(s)	254
XceI	RCATGY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	3 cut(s)	255, 699, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.