Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017770.1

Orthogroup ID

OG0004964

Physical Location & Seq

Genomic Coordinates Reverse (-)

28929 .. 30099

Gene Structure 1171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017770.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggaaagtccatatgcagggttgtctttggcaaagcctgtggtgcctggaaatgttggggagaatcaggaccagccaagtccaatatcagttctagaaccaccatttgtagaggatgacaatactattcaggaattttctaggtttttgaagccagaccacctaggaagacatctcaagtctaacttgattgacaaatcaccaccaataggatcaattgctcggaccctgtcatgggatgaatcttgtgcagagactgccacaccatatggtctattaaaatcgccttcagtttccacaagcattgaggaagaagaacaagactggcaagccattgtccaaactcttttatcagcagccggcctcgatggtgagctgcagtgtgattcgtttttcggtaaatggcattcacttgaaagtcctttggacccatctctccgagataagtacgccaacccggatgacaaagagcttttgcacgaggcaaagagaaggaaatggcgatcaagtcggaagctcgtattcgattgtgttaatgcagccctggtggacatcactggttacgggtcagcagacagcagcagcacaaggaccgtttcgtgcagtggggcccacgacaggttcttggagggcgattcccccctattggcagaccgcgtatggtcctgggtgaaggaatggtttttgagtgaggtgaggtgtgttccagaggatggtggggacatcaacagcctggtggtggagagggtggtgaagaaggaggttgtggggagagggtggcctgaacaaatgagaaatgaaattgacattgtgaggaaggatatagaggggaagttgctgcaagagcttgtggaggaggctgtggttgatctgacagggaggacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

295

Amino Acids

32.83

Weight (kDa)

4.74

Isoelectric Point (pI)

50.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20240 AT4G28760 AT4G28760
fragaria_vesca	FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940
malus_domestica	MD05G1183600.v1.1 MD10G1171400.v1.1
prunus_persica	Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1
pyrus_communis	pycom05g16860 pycom10g14780
rosa_chinensis	RchiOBHm_Chr6g0285601
rosa_laevigata	RLG00000012623
rosa_multiflora	Rmu_sc0001356.1_g000026 Rmu_sc0017770.1_g000008
rosa_rugosa	Rorug06G0176000.1 Rorug06G0176100 Rorug06G0176100
rosa_samantha	Rh6AG287400 Rh6BG288800 Rh6CG289900 Rh6DG282600
rosa_wichuraiana	Rw6G024710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	713
AccII	CGCG	1 cut(s)	657
AciI	CCGC	1 cut(s)	655
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	8 cut(s)	17, 209, 234, 235, 618, 646, 713, 739
AgsI	TTSAA	2 cut(s)	151, 416
AjnI	CCWGG	4 cut(s)	46, 543, 665, 732
AluBI	AGCT	4 cut(s)	376, 472, 517, 847
AluI	AGCT	4 cut(s)	376, 472, 517, 847
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	257
AoxI	GGCC	3 cut(s)	361, 609, 779
ApaI	GGGCCC	1 cut(s)	613
ApeKI	GCWGC	6 cut(s)	356, 376, 539, 579, 582, 838
ApoI	RAATTY	1 cut(s)	134
AspA2I	CCTAGG	1 cut(s)	163
AspS9I	GGNCC	7 cut(s)	70, 225, 427, 591, 609, 610, 663
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	5 cut(s)	192, 383, 682, 706, 763
AvaII	GGWCC	5 cut(s)	70, 225, 427, 591, 663
AvrII	CCTAGG	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	613
BauI	CACGAG	1 cut(s)	479
BbsI	GAAGAC	1 cut(s)	175
BbvI	GCAGC	6 cut(s)	363, 368, 551, 591, 594, 825
BccI	CCATC	3 cut(s)	362, 439, 707
BciT130I	CCWGG	4 cut(s)	48, 545, 667, 734
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	3 cut(s)	95, 141, 164
BfmI	CTRYAG	1 cut(s)	377
BisI	GCNGC	6 cut(s)	357, 377, 540, 580, 583, 839
BlnI	CCTAGG	1 cut(s)	163
BlsI	GCNGC	6 cut(s)	358, 378, 541, 581, 584, 840
Bme1390I	CCNGG	5 cut(s)	48, 458, 545, 667, 734
Bme18I	GGWCC	5 cut(s)	70, 225, 427, 591, 663
BmgT120I	GGNCC	7 cut(s)	70, 225, 427, 591, 609, 610, 663
BmiI	GGNNCC	5 cut(s)	45, 227, 429, 610, 611
BmrFI	CCNGG	5 cut(s)	48, 458, 545, 667, 734
BpiI	GAAGAC	1 cut(s)	175
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	458
BsaJI	CCNNGG	3 cut(s)	163, 543, 666
Bsc4I	CCNNNNNNNGG	8 cut(s)	17, 209, 234, 235, 618, 646, 713, 739
Bse118I	RCCGGY	1 cut(s)	359
Bse1I	ACTGG	2 cut(s)	329, 562
BseBI	CCWGG	4 cut(s)	48, 545, 667, 734
BseDI	CCNNGG	3 cut(s)	163, 543, 666
BseGI	GGATG	4 cut(s)	121, 244, 466, 718
BseLI	CCNNNNNNNGG	8 cut(s)	17, 209, 234, 235, 618, 646, 713, 739
BseNI	ACTGG	2 cut(s)	329, 562
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	1 cut(s)	613
BseXI	GCAGC	6 cut(s)	363, 368, 551, 591, 594, 825
BsgI	GTGCAG	2 cut(s)	270, 622
Bsh1236I	CGCG	1 cut(s)	657
BshFI	GGCC	3 cut(s)	363, 611, 781
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	360, 458
BslFI	GGGAC	1 cut(s)	734
BslI	CCNNNNNNNGG	8 cut(s)	17, 209, 234, 235, 618, 646, 713, 739
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	734
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	3 cut(s)	363, 611, 781
Bsp120I	GGGCCC	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	3 cut(s)	212, 503, 868
BspACI	CCGC	1 cut(s)	655
BspANI	GGCC	3 cut(s)	363, 611, 781
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	5 cut(s)	45, 227, 429, 610, 611
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	329, 562
BssAI	RCCGGY	1 cut(s)	359
BssECI	CCNNGG	3 cut(s)	163, 543, 666
BssMI	GATC	3 cut(s)	212, 503, 868
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	163
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	4 cut(s)	48, 545, 667, 734
Bst4CI	ACNGT	1 cut(s)	595
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	330, 361
BstF5I	GGATG	4 cut(s)	121, 244, 466, 718
BstFNI	CGCG	1 cut(s)	657
BstKTI	GATC	3 cut(s)	215, 506, 871
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	212, 503, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 257, 844
BstNI	CCWGG	4 cut(s)	48, 545, 667, 734
BstSCI	CCNGG	5 cut(s)	46, 456, 543, 665, 732
BstSFI	CTRYAG	1 cut(s)	377
BstSLI	GKGCMC	1 cut(s)	613
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	6 cut(s)	363, 368, 551, 591, 594, 825
BstV2I	GAAGAC	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	363, 611, 781
BtsCI	GGATG	4 cut(s)	121, 244, 466, 718
BtsI	GCAGTG	2 cut(s)	386, 610
BtsIMutI	CAGTG	3 cut(s)	386, 555, 610
Cac8I	GCNNGC	2 cut(s)	330, 361
CaiI	CAGNNNCTG	1 cut(s)	257
Cfr10I	RCCGGY	1 cut(s)	359
Cfr13I	GGNCC	7 cut(s)	70, 225, 427, 591, 609, 610, 663
Csp6I	GTAC	1 cut(s)	448
CspCI	CAANNNNNGTGG	4 cut(s)	21, 56, 286, 321
CviAII	CATG	1 cut(s)	234
CviQI	GTAC	1 cut(s)	448
DpnI	GATC	3 cut(s)	214, 505, 870
DpnII	GATC	3 cut(s)	212, 503, 868
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	613
Eco47I	GGWCC	5 cut(s)	70, 225, 427, 591, 663
Eco57I	CTGAAG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRII	CCWGG	4 cut(s)	46, 543, 665, 732
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	1 cut(s)	237
FaiI	YATR	8 cut(s)	13, 15, 235, 268, 270, 661, 824, 886
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	734
FatI	CATG	1 cut(s)	233
FauNDI	CATATG	2 cut(s)	13, 268
Fnu4HI	GCNGC	6 cut(s)	357, 377, 540, 580, 583, 839
FokI	GGATG	4 cut(s)	128, 251, 473, 725
FriOI	GRGCYC	1 cut(s)	613
Fsp4HI	GCNGC	6 cut(s)	357, 377, 540, 580, 583, 839
FspBI	CTAG	3 cut(s)	95, 141, 164
GluI	GCNGC	6 cut(s)	357, 377, 540, 580, 583, 839
HaeIII	GGCC	3 cut(s)	363, 611, 781
HapII	CCGG	2 cut(s)	360, 458
Hin1II	CATG	1 cut(s)	237
HinfI	GANTC	4 cut(s)	64, 242, 386, 635
HpaII	CCGG	2 cut(s)	360, 458
HphI	GGTGA	5 cut(s)	192, 383, 682, 706, 763
Hpy166II	GTNNAC	1 cut(s)	550
Hpy188I	TCNGA	4 cut(s)	225, 440, 513, 873
Hpy188III	TCNNGA	4 cut(s)	68, 95, 131, 707
Hpy8I	GTNNAC	1 cut(s)	550
HpyAV	CCTTC	5 cut(s)	297, 486, 667, 751, 811
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	7 cut(s)	17, 251, 379, 478, 539, 603, 841
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 257, 844
Hsp92II	CATG	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	359
KroNI	GCCGGC	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	212, 503, 868
Lsp1109I	GCAGC	6 cut(s)	363, 368, 551, 591, 594, 825
MaeI	CTAG	3 cut(s)	95, 141, 164
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	3 cut(s)	214, 505, 870
MboI	GATC	3 cut(s)	212, 503, 868
MboII	GAAGA	4 cut(s)	180, 323, 326, 766
MfeI	CAATTG	1 cut(s)	216
MhlI	GDGCHC	1 cut(s)	613
MluCI	AATT	3 cut(s)	134, 216, 801
MmeI	TCCRAC	1 cut(s)	491
MroNI	GCCGGC	1 cut(s)	359
MseI	TTAA	2 cut(s)	278, 534
MspI	CCGG	2 cut(s)	360, 458
MspR9I	CCNGG	5 cut(s)	48, 458, 545, 667, 734
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	406
MvaI	CCWGG	4 cut(s)	48, 545, 667, 734
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	3 cut(s)	43, 257, 844
NaeI	GCCGGC	1 cut(s)	361
NciI	CCSGG	1 cut(s)	458
NdeI	CATATG	2 cut(s)	13, 268
NdeII	GATC	3 cut(s)	212, 503, 868
NgoMIV	GCCGGC	1 cut(s)	359
NlaIII	CATG	1 cut(s)	237
NlaIV	GGNNCC	5 cut(s)	45, 227, 429, 610, 611
PctI	GAATGC	1 cut(s)	406
PdiI	GCCGGC	1 cut(s)	361
PfeI	GAWTC	4 cut(s)	64, 242, 386, 635
PflFI	GACNNNGTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	713
PkrI	GCNGC	6 cut(s)	358, 378, 541, 581, 584, 840
Psp6I	CCWGG	4 cut(s)	46, 543, 665, 732
PspGI	CCWGG	4 cut(s)	46, 543, 665, 732
PspN4I	GGNNCC	5 cut(s)	45, 227, 429, 610, 611
PspOMI	GGGCCC	1 cut(s)	609
PspPI	GGNCC	7 cut(s)	70, 225, 427, 591, 609, 610, 663
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	257
PsyI	GACNNNGTC	1 cut(s)	229
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SaqAI	TTAA	2 cut(s)	278, 534
SatI	GCNGC	6 cut(s)	357, 377, 540, 580, 583, 839
Sau3AI	GATC	3 cut(s)	212, 503, 868
Sau96I	GGNCC	7 cut(s)	70, 225, 427, 591, 609, 610, 663
ScrFI	CCNGG	5 cut(s)	48, 458, 545, 667, 734
SduI	GDGCHC	1 cut(s)	613
SfcI	CTRYAG	1 cut(s)	377
SinI	GGWCC	5 cut(s)	70, 225, 427, 591, 663
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	134, 216, 801
SsiI	CCGC	1 cut(s)	655
SspMI	CTAG	3 cut(s)	95, 141, 164
StyD4I	CCNGG	5 cut(s)	46, 456, 543, 665, 732
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	366, 525
TasI	AATT	3 cut(s)	134, 216, 801
TfiI	GAWTC	4 cut(s)	64, 242, 386, 635
Tru1I	TTAA	2 cut(s)	278, 534
Tru9I	TTAA	2 cut(s)	278, 534
TscAI	CASTG	3 cut(s)	386, 562, 610
TseI	GCWGC	6 cut(s)	356, 376, 539, 579, 582, 838
TspDTI	ATGAA	2 cut(s)	255, 813
TspRI	CASTG	3 cut(s)	386, 562, 610
Tth111I	GACNNNGTC	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	713
VpaK11BI	GGWCC	5 cut(s)	70, 225, 427, 591, 663
XapI	RAATTY	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	94
XmaJI	CCTAGG	1 cut(s)	163
XspI	CTAG	3 cut(s)	95, 141, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.