Protein of unknown function (DUF3741)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20240 AT4G28760 AT4G28760 |
| fragaria_vesca | FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 FvH4_2g19940 |
| malus_domestica | MD05G1183600.v1.1 MD10G1171400.v1.1 |
| prunus_persica | Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 Prupe.8G209800_v2.0.a1 |
| pyrus_communis | pycom05g16860 pycom10g14780 |
| rosa_chinensis | RchiOBHm_Chr6g0285601 |
| rosa_laevigata | RLG00000012623 |
| rosa_multiflora | Rmu_sc0001356.1_g000026 Rmu_sc0017770.1_g000008 |
| rosa_rugosa | Rorug06G0176000.1 Rorug06G0176100 Rorug06G0176100 |
| rosa_samantha | Rh6AG287400 Rh6BG288800 Rh6CG289900 Rh6DG282600 |
| rosa_wichuraiana | Rw6G024710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1243, 1643 |
| AccB1I | GGYRCC | 1 cut(s) | 2434 |
| AccII | CGCG | 2 cut(s) | 167, 3048 |
| AccIII | TCCGGA | 1 cut(s) | 835 |
| AciI | CCGC | 8 cut(s) | 162, 165, 1208, 1723, 2030, 2075, 2748, 3046 |
| AclWI | GGATC | 5 cut(s) | 966, 1219, 1683, 2054, 2611 |
| AcoI | YGGCCR | 2 cut(s) | 181, 3164 |
| AcsI | RAATTY | 5 cut(s) | 821, 1028, 1096, 1810, 2525 |
| AcuI | CTGAAG | 4 cut(s) | 51, 1702, 2328, 2664 |
| AcyI | GRCGYC | 1 cut(s) | 2435 |
| AfaI | GTAC | 5 cut(s) | 406, 745, 765, 1849, 2840 |
| AflII | CTTAAG | 2 cut(s) | 1076, 2567 |
| AjiI | CACGTC | 1 cut(s) | 199 |
| AjnI | CCWGG | 5 cut(s) | 372, 1366, 2437, 3056, 3117 |
| Alw21I | GWGCWC | 1 cut(s) | 1844 |
| Alw26I | GTCTC | 5 cut(s) | 82, 193, 1145, 2149, 2639 |
| AlwI | GGATC | 5 cut(s) | 966, 1219, 1683, 2054, 2611 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2648 |
| Ama87I | CYCGRG | 1 cut(s) | 364 |
| Aor13HI | TCCGGA | 1 cut(s) | 835 |
| AoxI | GGCC | 8 cut(s) | 181, 1358, 1389, 1525, 1788, 2752, 3000, 3164 |
| ApaI | GGGCCC | 1 cut(s) | 3004 |
| ApoI | RAATTY | 5 cut(s) | 821, 1028, 1096, 1810, 2525 |
| AseI | ATTAAT | 2 cut(s) | 942, 1683 |
| AspA2I | CCTAGG | 2 cut(s) | 1661, 2554 |
| AspLEI | GCGC | 2 cut(s) | 343, 2437 |
| AspS9I | GGNCC | 9 cut(s) | 1525, 1788, 2461, 2616, 2818, 2982, 3000, 3001, 3054 |
| AsuC2I | CCSGG | 4 cut(s) | 365, 366, 2262, 2849 |
| AvaI | CYCGRG | 1 cut(s) | 364 |
| AvaII | GGWCC | 5 cut(s) | 2461, 2616, 2818, 2982, 3054 |
| AvrII | CCTAGG | 2 cut(s) | 1661, 2554 |
| BaeGI | GKGCMC | 1 cut(s) | 3004 |
| BanI | GGYRCC | 1 cut(s) | 2434 |
| BanII | GRGCYC | 2 cut(s) | 1844, 3004 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 878, 910 |
| BauI | CACGAG | 1 cut(s) | 2870 |
| BbsI | GAAGAC | 3 cut(s) | 893, 1379, 2566 |
| Bbv12I | GWGCWC | 1 cut(s) | 1844 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 577, 611 |
| BciT130I | CCWGG | 5 cut(s) | 374, 1368, 2439, 3058, 3119 |
| BclI | TGATCA | 1 cut(s) | 1306 |
| BcnI | CCSGG | 4 cut(s) | 365, 366, 2262, 2849 |
| BcoDI | GTCTC | 5 cut(s) | 82, 193, 1145, 2149, 2639 |
| BfmI | CTRYAG | 3 cut(s) | 999, 1146, 2768 |
| BfoI | RGCGCY | 1 cut(s) | 2438 |
| BfrI | CTTAAG | 2 cut(s) | 1076, 2567 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1796 |
| BlnI | CCTAGG | 2 cut(s) | 1661, 2554 |
| BlpI | GCTNAGC | 1 cut(s) | 146 |
| BmcAI | AGTACT | 1 cut(s) | 406 |
| Bme1390I | CCNGG | 9 cut(s) | 365, 366, 374, 1368, 2262, 2439, 2849, 3058, 3119 |
| Bme18I | GGWCC | 5 cut(s) | 2461, 2616, 2818, 2982, 3054 |
| BmeT110I | CYCGRG | 1 cut(s) | 364 |
| BmgBI | CACGTC | 1 cut(s) | 199 |
| BmgT120I | GGNCC | 9 cut(s) | 1525, 1788, 2461, 2616, 2818, 2982, 3000, 3001, 3054 |
| BmiI | GGNNCC | 7 cut(s) | 502, 2436, 2618, 2820, 2984, 3001, 3002 |
| BmrFI | CCNGG | 9 cut(s) | 365, 366, 374, 1368, 2262, 2439, 2849, 3058, 3119 |
| BmrI | ACTGGG | 1 cut(s) | 417 |
| BmsI | GCATC | 8 cut(s) | 163, 359, 585, 667, 1027, 1851, 2269, 2291 |
| BmuI | ACTGGG | 1 cut(s) | 417 |
| BpiI | GAAGAC | 3 cut(s) | 893, 1379, 2566 |
| BpmI | CTGGAG | 3 cut(s) | 1317, 1599, 1722 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 146 |
| BpuEI | CTTGAG | 3 cut(s) | 113, 451, 2131 |
| BpuMI | CCSGG | 4 cut(s) | 365, 366, 2262, 2849 |
| BsaAI | YACGTR | 1 cut(s) | 1671 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1323 |
| BsaHI | GRCGYC | 1 cut(s) | 2435 |
| BsaI | GGTCTC | 1 cut(s) | 82 |
| BsaWI | WCCGGW | 5 cut(s) | 206, 835, 1530, 2043, 2359 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1831, 1861, 2396, 2426 |
| Bse118I | RCCGGY | 1 cut(s) | 2750 |
| Bse1I | ACTGG | 5 cut(s) | 412, 759, 1582, 2720, 2953 |
| Bse3DI | GCAATG | 2 cut(s) | 7, 1299 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1323 |
| BseAI | TCCGGA | 1 cut(s) | 835 |
| BseBI | CCWGG | 5 cut(s) | 374, 1368, 2439, 3058, 3119 |
| BseJI | GATNNNNATC | 1 cut(s) | 1323 |
| BseMI | GCAATG | 2 cut(s) | 7, 1299 |
| BseMII | CTCAG | 8 cut(s) | 896, 1265, 1391, 1645, 1653, 1829, 2184, 2300 |
| BseNI | ACTGG | 5 cut(s) | 412, 759, 1582, 2720, 2953 |
| BseRI | GAGGAG | 4 cut(s) | 565, 1460, 1505, 3254 |
| BseSI | GKGCMC | 1 cut(s) | 3004 |
| BseX3I | CGGCCG | 1 cut(s) | 181 |
| BseYI | CCCAGC | 1 cut(s) | 496 |
| BsgI | GTGCAG | 4 cut(s) | 693, 2661, 2852, 3013 |
| Bsh1236I | CGCG | 2 cut(s) | 167, 3048 |
| Bsh1285I | CGRYCG | 1 cut(s) | 184 |
| BshFI | GGCC | 8 cut(s) | 183, 1360, 1391, 1527, 1790, 2754, 3002, 3166 |
| BshNI | GGYRCC | 1 cut(s) | 2434 |
| BsiEI | CGRYCG | 1 cut(s) | 184 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1844 |
| BsiHKCI | CYCGRG | 1 cut(s) | 364 |
| BslFI | GGGAC | 1 cut(s) | 3119 |
| BsmAI | GTCTC | 5 cut(s) | 82, 193, 1145, 2149, 2639 |
| BsmFI | GGGAC | 1 cut(s) | 3119 |
| BsmI | GAATGC | 2 cut(s) | 816, 2797 |
| BsnI | GGCC | 8 cut(s) | 183, 1360, 1391, 1527, 1790, 2754, 3002, 3166 |
| Bso31I | GGTCTC | 1 cut(s) | 82 |
| BsoBI | CYCGRG | 1 cut(s) | 364 |
| Bsp120I | GGGCCC | 1 cut(s) | 3000 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1844, 3004 |
| Bsp13I | TCCGGA | 1 cut(s) | 835 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 146 |
| Bsp19I | CCATGG | 2 cut(s) | 1392, 2399 |
| BspACI | CCGC | 8 cut(s) | 162, 165, 1208, 1723, 2030, 2075, 2748, 3046 |
| BspANI | GGCC | 8 cut(s) | 183, 1360, 1391, 1527, 1790, 2754, 3002, 3166 |
| BspCNI | CTCAG | 8 cut(s) | 895, 1264, 1390, 1644, 1652, 1828, 2185, 2299 |
| BspEI | TCCGGA | 1 cut(s) | 835 |
| BspFNI | CGCG | 2 cut(s) | 167, 3048 |
| BspHI | TCATGA | 1 cut(s) | 2068 |
| BspLI | GGNNCC | 7 cut(s) | 502, 2436, 2618, 2820, 2984, 3001, 3002 |
| BspMAI | CTGCAG | 1 cut(s) | 2772 |
| BspPI | GGATC | 5 cut(s) | 966, 1219, 1683, 2054, 2611 |
| BspQI | GCTCTTC | 2 cut(s) | 463, 1968 |
| BspT107I | GGYRCC | 1 cut(s) | 2434 |
| BspTI | CTTAAG | 2 cut(s) | 1076, 2567 |
| BspTNI | GGTCTC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 2 cut(s) | 7, 1299 |
| BsrFI | RCCGGY | 1 cut(s) | 2750 |
| BsrI | ACTGG | 5 cut(s) | 412, 759, 1582, 2720, 2953 |
| BssAI | RCCGGY | 1 cut(s) | 2750 |
| BssNI | GRCGYC | 1 cut(s) | 2435 |
| BssSI | CACGAG | 1 cut(s) | 2870 |
| BssT1I | CCWWGG | 5 cut(s) | 1392, 1661, 2211, 2399, 2554 |
| Bst2BI | CACGAG | 1 cut(s) | 2870 |
| Bst2UI | CCWGG | 5 cut(s) | 374, 1368, 2439, 3058, 3119 |
| Bst4CI | ACNGT | 2 cut(s) | 1168, 1202 |
| Bst6I | CTCTTC | 3 cut(s) | 463, 1140, 1968 |
| BstACI | GRCGYC | 1 cut(s) | 2435 |
| BstAFI | CTTAAG | 2 cut(s) | 1076, 2567 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2648 |
| BstBAI | YACGTR | 1 cut(s) | 1671 |
| BstC8I | GCNNGC | 5 cut(s) | 252, 727, 1866, 2721, 2752 |
| BstDSI | CCRYGG | 2 cut(s) | 1392, 2399 |
| BstFNI | CGCG | 2 cut(s) | 167, 3048 |
| BstH2I | RGCGCY | 1 cut(s) | 2438 |
| BstHHI | GCGC | 2 cut(s) | 343, 2437 |
| BstMAI | GTCTC | 5 cut(s) | 82, 193, 1145, 2149, 2639 |
| BstMCI | CGRYCG | 1 cut(s) | 184 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 118, 173, 1796, 2204, 2434, 2648, 3229 |
| BstNI | CCWGG | 5 cut(s) | 374, 1368, 2439, 3058, 3119 |
| BstNSI | RCATGY | 2 cut(s) | 1729, 1832 |
| BstSCI | CCNGG | 9 cut(s) | 363, 364, 372, 1366, 2260, 2437, 2847, 3056, 3117 |
| BstSFI | CTRYAG | 3 cut(s) | 999, 1146, 2768 |
| BstSLI | GKGCMC | 1 cut(s) | 3004 |
| BstUI | CGCG | 2 cut(s) | 167, 3048 |
| BstV2I | GAAGAC | 3 cut(s) | 893, 1379, 2566 |
| BstX2I | RGATCY | 1 cut(s) | 958 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 452, 667, 994 |
| BstYI | RGATCY | 1 cut(s) | 958 |
| BstZI | CGGCCG | 1 cut(s) | 181 |
| BsuRI | GGCC | 8 cut(s) | 183, 1360, 1391, 1527, 1790, 2754, 3002, 3166 |
| BtgI | CCRYGG | 2 cut(s) | 1392, 2399 |
| BtrI | CACGTC | 1 cut(s) | 199 |
| BtsI | GCAGTG | 3 cut(s) | 1272, 2777, 3001 |
| BtsIMutI | CAGTG | 9 cut(s) | 766, 836, 1164, 1272, 1639, 2294, 2777, 2946, 3001 |
| Cac8I | GCNNGC | 5 cut(s) | 252, 727, 1866, 2721, 2752 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2648 |
| CciI | TCATGA | 1 cut(s) | 2068 |
| CfoI | GCGC | 2 cut(s) | 343, 2437 |
| Cfr10I | RCCGGY | 1 cut(s) | 2750 |
| Cfr13I | GGNCC | 9 cut(s) | 1525, 1788, 2461, 2616, 2818, 2982, 3000, 3001, 3054 |
| Cfr9I | CCCGGG | 1 cut(s) | 364 |
| CseI | GACGC | 1 cut(s) | 156 |
| Csp6I | GTAC | 5 cut(s) | 405, 744, 764, 1848, 2839 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 606, 641, 2284, 2319, 2412, 2447, 2677, 2712 |
| CviQI | GTAC | 5 cut(s) | 405, 744, 764, 1848, 2839 |
| DinI | GGCGCC | 1 cut(s) | 2436 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1243, 1643 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1243, 1643 |
| EaeI | YGGCCR | 2 cut(s) | 181, 3164 |
| EagI | CGGCCG | 1 cut(s) | 181 |
| Eam1104I | CTCTTC | 3 cut(s) | 463, 1140, 1968 |
| EarI | CTCTTC | 3 cut(s) | 463, 1140, 1968 |
| Ecl136II | GAGCTC | 1 cut(s) | 1842 |
| EclXI | CGGCCG | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 5 cut(s) | 1392, 1661, 2211, 2399, 2554 |
| Eco147I | AGGCCT | 1 cut(s) | 1360 |
| Eco24I | GRGCYC | 2 cut(s) | 1844, 3004 |
| Eco31I | GGTCTC | 1 cut(s) | 82 |
| Eco47I | GGWCC | 5 cut(s) | 2461, 2616, 2818, 2982, 3054 |
| Eco52I | CGGCCG | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 1842 |
| Eco57I | CTGAAG | 4 cut(s) | 51, 1702, 2328, 2664 |
| Eco88I | CYCGRG | 1 cut(s) | 364 |
| EcoICRI | GAGCTC | 1 cut(s) | 1842 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2982, 3000 |
| EcoRI | GAATTC | 1 cut(s) | 1028 |
| EcoRII | CCWGG | 5 cut(s) | 372, 1366, 2437, 3056, 3117 |
| EcoT14I | CCWWGG | 5 cut(s) | 1392, 1661, 2211, 2399, 2554 |
| EcoT22I | ATGCAT | 1 cut(s) | 2284 |
| EcoT38I | GRGCYC | 2 cut(s) | 1844, 3004 |
| EgeI | GGCGCC | 1 cut(s) | 2436 |
| EheI | GGCGCC | 1 cut(s) | 2436 |
| ErhI | CCWWGG | 5 cut(s) | 1392, 1661, 2211, 2399, 2554 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2561, 2593 |
| FaqI | GGGAC | 1 cut(s) | 3119 |
| FauI | CCCGC | 2 cut(s) | 1201, 2068 |
| FauNDI | CATATG | 1 cut(s) | 2659 |
| FbaI | TGATCA | 1 cut(s) | 1306 |
| FriOI | GRGCYC | 2 cut(s) | 1844, 3004 |
| GlaI | GCGC | 2 cut(s) | 342, 2436 |
| GsaI | CCCAGC | 1 cut(s) | 500 |
| GsuI | CTGGAG | 3 cut(s) | 1317, 1599, 1722 |
| HaeII | RGCGCY | 1 cut(s) | 2438 |
| HaeIII | GGCC | 8 cut(s) | 183, 1360, 1391, 1527, 1790, 2754, 3002, 3166 |
| HgaI | GACGC | 1 cut(s) | 156 |
| HhaI | GCGC | 2 cut(s) | 343, 2437 |
| Hin1I | GRCGYC | 1 cut(s) | 2435 |
| Hin6I | GCGC | 2 cut(s) | 341, 2435 |
| HinP1I | GCGC | 2 cut(s) | 341, 2435 |
| HincII | GTYRAC | 2 cut(s) | 388, 1890 |
| HindII | GTYRAC | 2 cut(s) | 388, 1890 |
| Hpy166II | GTNNAC | 5 cut(s) | 83, 388, 764, 1890, 2941 |
| Hpy8I | GTNNAC | 5 cut(s) | 83, 388, 764, 1890, 2941 |
| HpyCH4III | ACNGT | 2 cut(s) | 1168, 1202 |
| HpyCH4IV | ACGT | 3 cut(s) | 36, 198, 1670 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 118, 173, 1796, 2204, 2434, 2648, 3229 |
| HpySE526I | ACGT | 3 cut(s) | 36, 198, 1670 |
| Hsp92I | GRCGYC | 1 cut(s) | 2435 |
| HspAI | GCGC | 2 cut(s) | 341, 2435 |
| KasI | GGCGCC | 1 cut(s) | 2434 |
| Kpn2I | TCCGGA | 1 cut(s) | 835 |
| KroI | GCCGGC | 1 cut(s) | 2750 |
| KroNI | GCCGGC | 1 cut(s) | 2752 |
| Ksp22I | TGATCA | 1 cut(s) | 1306 |
| LguI | GCTCTTC | 2 cut(s) | 463, 1968 |
| LmnI | GCTCC | 6 cut(s) | 838, 1336, 1447, 1819, 1839, 2401 |
| LweI | GCATC | 8 cut(s) | 163, 359, 585, 667, 1027, 1851, 2269, 2291 |
| MaeII | ACGT | 3 cut(s) | 36, 198, 1670 |
| MaeIII | GTNAC | 7 cut(s) | 487, 893, 1634, 1650, 1913, 2365, 2951 |
| MfeI | CAATTG | 3 cut(s) | 17, 261, 2607 |
| MflI | RGATCY | 1 cut(s) | 958 |
| MhlI | GDGCHC | 2 cut(s) | 1844, 3004 |
| Mly113I | GGCGCC | 1 cut(s) | 2435 |
| MlyI | GAGTC | 6 cut(s) | 195, 481, 1369, 1631, 1751, 2348 |
| MmeI | TCCRAC | 3 cut(s) | 216, 246, 2882 |
| Mph1103I | ATGCAT | 1 cut(s) | 2284 |
| MroI | TCCGGA | 1 cut(s) | 835 |
| MroNI | GCCGGC | 1 cut(s) | 2750 |
| MslI | CAYNNNNRTG | 9 cut(s) | 209, 450, 759, 772, 1119, 1455, 1683, 1750, 2287 |
| MspA1I | CMGCKG | 1 cut(s) | 1622 |
| MspCI | CTTAAG | 2 cut(s) | 1076, 2567 |
| MspR9I | CCNGG | 9 cut(s) | 365, 366, 374, 1368, 2262, 2439, 2849, 3058, 3119 |
| MunI | CAATTG | 3 cut(s) | 17, 261, 2607 |
| Mva1269I | GAATGC | 2 cut(s) | 816, 2797 |
| MvaI | CCWGG | 5 cut(s) | 374, 1368, 2439, 3058, 3119 |
| MvnI | CGCG | 2 cut(s) | 167, 3048 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 118, 173, 1796, 2204, 2434, 2648, 3229 |
| NaeI | GCCGGC | 1 cut(s) | 2752 |
| NarI | GGCGCC | 1 cut(s) | 2435 |
| NciI | CCSGG | 4 cut(s) | 365, 366, 2262, 2849 |
| NcoI | CCATGG | 2 cut(s) | 1392, 2399 |
| NdeI | CATATG | 1 cut(s) | 2659 |
| NgoMIV | GCCGGC | 1 cut(s) | 2750 |
| NlaIV | GGNNCC | 7 cut(s) | 502, 2436, 2618, 2820, 2984, 3001, 3002 |
| NmeAIII | GCCGAG | 1 cut(s) | 209 |
| NmuCI | GTSAC | 3 cut(s) | 1634, 1650, 1913 |
| NsiI | ATGCAT | 1 cut(s) | 2284 |
| NspI | RCATGY | 2 cut(s) | 1729, 1832 |
| PagI | TCATGA | 1 cut(s) | 2068 |
| PasI | CCCWGGG | 1 cut(s) | 1367 |
| PceI | AGGCCT | 1 cut(s) | 1360 |
| PciSI | GCTCTTC | 2 cut(s) | 463, 1968 |
| PctI | GAATGC | 2 cut(s) | 816, 2797 |
| PdiI | GCCGGC | 1 cut(s) | 2752 |
| PflFI | GACNNNGTC | 2 cut(s) | 197, 2620 |
| PfoI | TCCNGGA | 1 cut(s) | 2260 |
| PleI | GAGTC | 6 cut(s) | 194, 480, 1369, 1631, 1750, 2348 |
| PluTI | GGCGCC | 1 cut(s) | 2438 |
| PpsI | GAGTC | 6 cut(s) | 194, 480, 1369, 1631, 1750, 2348 |
| Ppu21I | YACGTR | 1 cut(s) | 1671 |
| PpuMI | RGGWCCY | 1 cut(s) | 2982 |
| PshBI | ATTAAT | 2 cut(s) | 942, 1683 |
| Psp124BI | GAGCTC | 1 cut(s) | 1844 |
| Psp5II | RGGWCCY | 1 cut(s) | 2982 |
| Psp6I | CCWGG | 5 cut(s) | 372, 1366, 2437, 3056, 3117 |
| PspFI | CCCAGC | 1 cut(s) | 496 |
| PspGI | CCWGG | 5 cut(s) | 372, 1366, 2437, 3056, 3117 |
| PspN4I | GGNNCC | 7 cut(s) | 502, 2436, 2618, 2820, 2984, 3001, 3002 |
| PspOMI | GGGCCC | 1 cut(s) | 3000 |
| PspPI | GGNCC | 9 cut(s) | 1525, 1788, 2461, 2616, 2818, 2982, 3000, 3001, 3054 |
| PspPPI | RGGWCCY | 1 cut(s) | 2982 |
| PstI | CTGCAG | 1 cut(s) | 2772 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2648 |
| PsuI | RGATCY | 1 cut(s) | 958 |
| PsyI | GACNNNGTC | 2 cut(s) | 197, 2620 |
| PvuII | CAGCTG | 1 cut(s) | 1622 |
| RsaI | GTAC | 5 cut(s) | 406, 745, 765, 1849, 2840 |
| RsaNI | GTAC | 5 cut(s) | 405, 744, 764, 1848, 2839 |
| RseI | CAYNNNNRTG | 9 cut(s) | 209, 450, 759, 772, 1119, 1455, 1683, 1750, 2287 |
| SacI | GAGCTC | 1 cut(s) | 1844 |
| SapI | GCTCTTC | 2 cut(s) | 463, 1968 |
| Sau96I | GGNCC | 9 cut(s) | 1525, 1788, 2461, 2616, 2818, 2982, 3000, 3001, 3054 |
| ScaI | AGTACT | 1 cut(s) | 406 |
| SchI | GAGTC | 6 cut(s) | 195, 481, 1369, 1631, 1751, 2348 |
| ScrFI | CCNGG | 9 cut(s) | 365, 366, 374, 1368, 2262, 2439, 2849, 3058, 3119 |
| SduI | GDGCHC | 2 cut(s) | 1844, 3004 |
| SfaNI | GCATC | 8 cut(s) | 163, 359, 585, 667, 1027, 1851, 2269, 2291 |
| SfcI | CTRYAG | 3 cut(s) | 999, 1146, 2768 |
| SfoI | GGCGCC | 1 cut(s) | 2436 |
| SinI | GGWCC | 5 cut(s) | 2461, 2616, 2818, 2982, 3054 |
| SmaI | CCCGGG | 1 cut(s) | 366 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 209, 450, 759, 772, 1119, 1455, 1683, 1750, 2287 |
| SmlI | CTYRAG | 5 cut(s) | 128, 466, 1076, 2146, 2567 |
| SmoI | CTYRAG | 5 cut(s) | 128, 466, 1076, 2146, 2567 |
| SseBI | AGGCCT | 1 cut(s) | 1360 |
| SsiI | CCGC | 8 cut(s) | 162, 165, 1208, 1723, 2030, 2075, 2748, 3046 |
| SspDI | GGCGCC | 1 cut(s) | 2434 |
| SstI | GAGCTC | 1 cut(s) | 1844 |
| StuI | AGGCCT | 1 cut(s) | 1360 |
| StyD4I | CCNGG | 9 cut(s) | 363, 364, 372, 1366, 2260, 2437, 2847, 3056, 3117 |
| StyI | CCWWGG | 5 cut(s) | 1392, 1661, 2211, 2399, 2554 |
| TaaI | ACNGT | 2 cut(s) | 1168, 1202 |
| TaiI | ACGT | 3 cut(s) | 39, 201, 1673 |
| TaqI | TCGA | 5 cut(s) | 1520, 2006, 2203, 2757, 2916 |
| TatI | WGTACW | 3 cut(s) | 404, 743, 1847 |
| TauI | GCSGC | 4 cut(s) | 164, 167, 1725, 2750 |
| TscAI | CASTG | 9 cut(s) | 766, 836, 1171, 1272, 1639, 2294, 2777, 2953, 3001 |
| TseFI | GTSAC | 3 cut(s) | 1634, 1650, 1913 |
| Tsp45I | GTSAC | 3 cut(s) | 1634, 1650, 1913 |
| TspGWI | ACGGA | 2 cut(s) | 449, 912 |
| TspMI | CCCGGG | 1 cut(s) | 364 |
| TspRI | CASTG | 9 cut(s) | 766, 836, 1171, 1272, 1639, 2294, 2777, 2953, 3001 |
| Tth111I | GACNNNGTC | 2 cut(s) | 197, 2620 |
| Vha464I | CTTAAG | 2 cut(s) | 1076, 2567 |
| VpaK11BI | GGWCC | 5 cut(s) | 2461, 2616, 2818, 2982, 3054 |
| VspI | ATTAAT | 2 cut(s) | 942, 1683 |
| XapI | RAATTY | 5 cut(s) | 821, 1028, 1096, 1810, 2525 |
| XbaI | TCTAGA | 3 cut(s) | 416, 2162, 2485 |
| XceI | RCATGY | 2 cut(s) | 1729, 1832 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 766, 774, 2993 |
| XmaI | CCCGGG | 1 cut(s) | 364 |
| XmaJI | CCTAGG | 2 cut(s) | 1661, 2554 |
| ZrmI | AGTACT | 1 cut(s) | 406 |
| Zsp2I | ATGCAT | 1 cut(s) | 2284 |