Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020591

Physical Location & Seq

Genomic Coordinates Forward (+)

63785267 .. 63785903

Gene Structure 637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27366

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATGAGTGAAGGCTATGTTTGGATCATGACTTCTTGGATAACTAATAATTTGAAGTCTATGAAACACCGGTTCTACATGGACGGGGTATTAGGTGTGGAAACTTATGTCCCGTTGACAAAAGAGCTTCAAGAGTTCTTACCACGGTGGAAGAGGCAGTCCCATGAAGACGCTGCAACCGCCATCTTTGCTGCTAACTTGGATGCTTTTGGACTTTGGGCTCATGATGCTGCTATTGTACTAGCCATAGCTGTTGAAGGAGTAATTGGGAGTACAAGTAGTTATGGCCTCCAAAAGTCAGATGCTGTTATCAACTCAACAGATCTTTCTAATCTTCCTGTCTCTCAATATGGTTCAAAACTGCTCAAAGCCTTGTCTAGTGTTAGATTTCAAGGCATAGCTGGAAATTTCAGCCTTGTTGATGGGGAACTTCAATCATCGACTTTCCAGATTGATAATGTCATTGGTGGTAGACCAAGGGCAATTGGATACTGGAACCACAAAATGGACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

171

Amino Acids

18.92

Weight (kDa)

6.41

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 155	2.7e-22	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020591)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304561
rosa_laevigata	RLG00000010967 RLG00000010968
rosa_multiflora	Rmu_co8256357.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198250
rosa_wichuraiana	Rw6G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	472
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	2 cut(s)	240, 274
AfiI	CCNNNNNNNGG	1 cut(s)	505
AgeI	ACCGGT	1 cut(s)	69
AgsI	TTSAA	6 cut(s)	55, 131, 257, 357, 392, 434
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	3 cut(s)	127, 251, 401
AluI	AGCT	3 cut(s)	127, 251, 401
Alw26I	GTCTC	1 cut(s)	346
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	173, 191, 230
ApoI	RAATTY	1 cut(s)	406
AsiGI	ACCGGT	1 cut(s)	69
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	160, 178, 217
BccI	CCATC	2 cut(s)	191, 416
BciVI	GTATCC	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	242, 378
BfuI	GTATCC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	3 cut(s)	174, 192, 231
BlsI	GCNGC	3 cut(s)	175, 193, 232
BmiI	GGNNCC	1 cut(s)	497
BmsI	GCATC	3 cut(s)	193, 217, 292
BpiI	GAAGAC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	143, 476
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	505
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	497
BseDI	CCNNGG	2 cut(s)	143, 476
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	1 cut(s)	505
BseNI	ACTGG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	160, 178, 217
BshFI	GGCC	1 cut(s)	288
BshTI	ACCGGT	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	95, 145
BslI	CCNNNNNNNGG	1 cut(s)	505
BsmAI	GTCTC	1 cut(s)	346
BsmFI	GGGAC	2 cut(s)	95, 145
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	24, 322
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	1 cut(s)	288
BspHI	TCATGA	2 cut(s)	27, 223
BspLI	GGNNCC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	497
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	2 cut(s)	143, 476
BssMI	GATC	2 cut(s)	24, 322
BssT1I	CCWWGG	1 cut(s)	476
Bst4CI	ACNGT	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	2 cut(s)	27, 325
BstMAI	GTCTC	1 cut(s)	346
BstMBI	GATC	2 cut(s)	24, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 227
BstV1I	GCAGC	3 cut(s)	160, 178, 217
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuI	GTATCC	1 cut(s)	482
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	305
CciI	TCATGA	2 cut(s)	27, 223
Cfr10I	RCCGGY	1 cut(s)	69
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	239, 273
CspAI	ACCGGT	1 cut(s)	69
CviAII	CATG	4 cut(s)	28, 79, 164, 224
CviJI	RGCY	9 cut(s)	15, 127, 221, 245, 251, 288, 371, 401, 414
CviKI_1	RGCY	9 cut(s)	15, 127, 221, 245, 251, 288, 371, 401, 414
CviQI	GTAC	2 cut(s)	239, 273
DpnI	GATC	2 cut(s)	26, 324
DpnII	GATC	2 cut(s)	24, 322
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Eco130I	CCWWGG	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	476
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	4 cut(s)	31, 82, 167, 227
FaqI	GGGAC	2 cut(s)	95, 145
FatI	CATG	4 cut(s)	27, 78, 163, 223
FblI	GTMKAC	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	174, 192, 231
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	3 cut(s)	174, 192, 231
FspBI	CTAG	2 cut(s)	242, 378
GluI	GCNGC	3 cut(s)	174, 192, 231
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	31, 82, 167, 227
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	117, 473
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	28, 131, 224, 448
Hpy8I	GTNNAC	2 cut(s)	117, 473
HpyAV	CCTTC	2 cut(s)	5, 251
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 227
Hsp92II	CATG	4 cut(s)	31, 82, 167, 227
Kzo9I	GATC	2 cut(s)	24, 322
LpnPI	CCDG	5 cut(s)	83, 351, 387, 461, 478
Lsp1109I	GCAGC	3 cut(s)	160, 178, 217
LweI	GCATC	3 cut(s)	193, 217, 292
MaeI	CTAG	2 cut(s)	242, 378
MalI	GATC	2 cut(s)	26, 324
MboI	GATC	2 cut(s)	24, 322
MboII	GAAGA	3 cut(s)	163, 179, 326
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	223
MluCI	AATT	4 cut(s)	49, 264, 406, 483
MnlI	CCTC	2 cut(s)	147, 299
MspI	CCGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 227
NdeII	GATC	2 cut(s)	24, 322
NlaIII	CATG	4 cut(s)	31, 82, 167, 227
NlaIV	GGNNCC	1 cut(s)	497
PagI	TCATGA	2 cut(s)	27, 223
PflMI	CCANNNNNTGG	1 cut(s)	505
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	175, 193, 232
PspN4I	GGNNCC	1 cut(s)	497
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	240, 274
RsaNI	GTAC	2 cut(s)	239, 273
SatI	GCNGC	3 cut(s)	174, 192, 231
Sau3AI	GATC	2 cut(s)	24, 322
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	4 cut(s)	97, 129, 253, 403
SfaNI	GCATC	3 cut(s)	193, 217, 292
Sse9I	AATT	4 cut(s)	49, 264, 406, 483
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	2 cut(s)	242, 378
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	440
TasI	AATT	4 cut(s)	49, 264, 406, 483
TatI	WGTACW	2 cut(s)	238, 272
TseI	GCWGC	3 cut(s)	173, 191, 230
TspDTI	ATGAA	2 cut(s)	77, 180
Van91I	CCANNNNNTGG	1 cut(s)	505
XapI	RAATTY	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	472
XspI	CTAG	2 cut(s)	242, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.