Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0020591

Physical Location & Seq

Genomic Coordinates Forward (+)

62728009 .. 62730484

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G038660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGACGGGGTATTAGGTGTGGAAACTTATGTCCCGTTGACAAAAGAGCTTCAAGAGTTCTTACCACGGTGGAAGAGGCAGTCCCATGAAGACGCTGCAACCGCCATCTTTGCTGCTAACTTGGATGTTTTTGGACTTTGGGCTCATGATGCTGCTATTGTACTAGCCATAGCTGTTGAAGGAGTAATTGGGAGTACAAGTAGTTATGGCCTCCAAAAGTCAGATGCTGTTATCAACTCAACAGATCTTTCTAATCTTCCTGTCTCTCAATATGGTTCAAAACTGCTCAAAGCCTTGTCTAGTGTTAGATTTCAAGGCATAGCTGGAAATTTGAGCCTTGTTGATGGGGAACTTCAATCATCGACTTTCCAGATTGATAATGTCATTGGTGGTTTTCATGAGTCCAAACTTCAGCATCTTAAAACCGTGGAAGAAATTGATGATGCTCTTTCAAAAGGGAGTGCAAATGGCGGAGTTGCAGCTGTTGTGGATGAAACTCCCAGCATGAAGCTTTTCCTTGCAAAATACTGCAACAAATATGCAATGAGTACTAGACCGTTGTTTAAAACCGATGGCCTTGCCTTTGTGTTTCCGAAACGTTCTCCTCTTTTACCTGATATTTCACAGGCAATCCTGAATGTAACAGGACGACAGAAGATAATGGACATCGAAAACAAATGGTTCCGTGAACACAGCAATTGCCAAGACTCAGGTGGTCCAGACATTTCTAGCACTGGTCTTCGTGCATATAGCTTTTTGGTCATATTTCTCATTGTTGGTGGTGTTTCAATGCTCGCTCTCATCATACGTGCAGTTTCTTTCGTGAACAAGCATAAGGATGTCTGGAATTCAGAAGCCTCTCTATATAGTAGGTTTTGGGTCATGTGGAACATTTTCAAAGAAGAAGAGCCGAATTGTGACAGTGAACGACAAGATGTAGTTGTTGGCTCATCTAACAACTCTCGAGAAAGTTCAGTCACAAGTTCTGTATCTTCTGGTTCTGAAGAGCAACAAGCACGCTCATCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

343

Amino Acids

37.44

Weight (kDa)

5.35

Isoelectric Point (pI)

52.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 129	5.5e-13	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020591)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304561
rosa_laevigata	RLG00000010967 RLG00000010968
rosa_multiflora	Rmu_co8256357.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198250
rosa_wichuraiana	Rw6G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	102, 471
AclI	AACGTT	1 cut(s)	598
AcsI	RAATTY	2 cut(s)	328, 847
AcuI	CTGAAG	2 cut(s)	395, 1023
AfaI	GTAC	3 cut(s)	162, 196, 550
AgsI	TTSAA	8 cut(s)	53, 179, 279, 314, 356, 453, 789, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	171, 203
AluBI	AGCT	7 cut(s)	49, 173, 323, 482, 511, 753, 1029
AluI	AGCT	7 cut(s)	49, 173, 323, 482, 511, 753, 1029
Alw26I	GTCTC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	227
Ama87I	CYCGRG	1 cut(s)	963
AoxI	GGCC	2 cut(s)	208, 574
ApeKI	GCWGC	4 cut(s)	95, 113, 152, 479
ApoI	RAATTY	2 cut(s)	328, 847
Asp700I	GAANNNNTTC	2 cut(s)	512, 893
AspS9I	GGNCC	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	963
AvaII	GGWCC	1 cut(s)	716
BanII	GRGCYC	1 cut(s)	145
BbsI	GAAGAC	2 cut(s)	96, 731
BbvI	GCAGC	4 cut(s)	82, 100, 139, 491
BccI	CCATC	3 cut(s)	113, 338, 566
BcgI	CGANNNNNNTGC	2 cut(s)	560, 594
BcoDI	GTCTC	1 cut(s)	268
BfaI	CTAG	4 cut(s)	164, 300, 552, 729
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	4 cut(s)	96, 114, 153, 480
BlsI	GCNGC	4 cut(s)	97, 115, 154, 481
BmcAI	AGTACT	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	716
BmeT110I	CYCGRG	1 cut(s)	963
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	683
BmsI	GCATC	4 cut(s)	139, 214, 424, 433
BpiI	GAAGAC	2 cut(s)	96, 731
BsaAI	YACGTR	1 cut(s)	809
BsaJI	CCNNGG	2 cut(s)	65, 426
BsaXI	ACNNNNNCTCC	2 cut(s)	184, 214
Bse1I	ACTGG	1 cut(s)	739
Bse3DI	GCAATG	1 cut(s)	549
BseDI	CCNNGG	2 cut(s)	65, 426
BseGI	GGATG	3 cut(s)	130, 496, 844
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	723
BseNI	ACTGG	1 cut(s)	739
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	4 cut(s)	82, 100, 139, 491
BseYI	CCCAGC	1 cut(s)	500
BsgI	GTGCAG	1 cut(s)	831
BshFI	GGCC	2 cut(s)	210, 576
BsiHKCI	CYCGRG	1 cut(s)	963
BslFI	GGGAC	2 cut(s)	17, 67
BsmAI	GTCTC	1 cut(s)	268
BsmFI	GGGAC	2 cut(s)	17, 67
BsnI	GGCC	2 cut(s)	210, 576
BsoBI	CYCGRG	1 cut(s)	963
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	102, 471
BspANI	GGCC	2 cut(s)	210, 576
BspCNI	CTCAG	1 cut(s)	722
BspHI	TCATGA	2 cut(s)	145, 397
BspLI	GGNNCC	1 cut(s)	683
BspQI	GCTCTTC	2 cut(s)	900, 999
BsrDI	GCAATG	1 cut(s)	549
BsrI	ACTGG	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	65, 426
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	4 cut(s)	69, 427, 558, 923
Bst6I	CTCTTC	3 cut(s)	68, 900, 999
BstBAI	YACGTR	1 cut(s)	809
BstC8I	GCNNGC	2 cut(s)	795, 1018
BstDEI	CTNAG	1 cut(s)	709
BstDSI	CCRYGG	2 cut(s)	65, 426
BstF5I	GGATG	3 cut(s)	130, 496, 844
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 110, 149, 1026
BstV1I	GCAGC	4 cut(s)	82, 100, 139, 491
BstV2I	GAAGAC	2 cut(s)	96, 731
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BsuRI	GGCC	2 cut(s)	210, 576
BtgI	CCRYGG	2 cut(s)	65, 426
BtsCI	GGATG	3 cut(s)	130, 496, 844
BtsIMutI	CAGTG	2 cut(s)	732, 928
Cac8I	GCNNGC	2 cut(s)	795, 1018
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	2 cut(s)	145, 397
Cfr13I	GGNCC	1 cut(s)	716
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	161, 195, 549
CviAII	CATG	5 cut(s)	86, 146, 398, 505, 883
CviQI	GTAC	3 cut(s)	161, 195, 549
DdeI	CTNAG	1 cut(s)	709
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	565
Eam1104I	CTCTTC	3 cut(s)	68, 900, 999
EarI	CTCTTC	3 cut(s)	68, 900, 999
EciI	GGCGGA	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	2 cut(s)	395, 1023
Eco88I	CYCGRG	1 cut(s)	963
EcoRI	GAATTC	1 cut(s)	847
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	5 cut(s)	89, 149, 401, 508, 886
FaqI	GGGAC	2 cut(s)	17, 67
FatI	CATG	5 cut(s)	85, 145, 397, 504, 882
Fnu4HI	GCNGC	4 cut(s)	96, 114, 153, 480
FokI	GGATG	3 cut(s)	137, 503, 851
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	96, 114, 153, 480
FspBI	CTAG	4 cut(s)	164, 300, 552, 729
GluI	GCNGC	4 cut(s)	96, 114, 153, 480
GsaI	CCCAGC	1 cut(s)	504
HaeIII	GGCC	2 cut(s)	210, 576
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	89, 149, 401, 508, 886
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	2 cut(s)	401, 707
Hpy166II	GTNNAC	4 cut(s)	39, 689, 826, 926
Hpy188I	TCNGA	4 cut(s)	223, 594, 853, 1003
Hpy8I	GTNNAC	4 cut(s)	39, 689, 826, 926
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	4 cut(s)	69, 427, 558, 923
HpyCH4IV	ACGT	2 cut(s)	598, 808
HpyCH4V	TGCA	8 cut(s)	98, 464, 479, 521, 531, 542, 746, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 110, 149, 1026
HpyF3I	CTNAG	1 cut(s)	709
HpySE526I	ACGT	2 cut(s)	598, 808
Hsp92II	CATG	5 cut(s)	89, 149, 401, 508, 886
Kzo9I	GATC	1 cut(s)	244
LguI	GCTCTTC	2 cut(s)	900, 999
Lsp1109I	GCAGC	4 cut(s)	82, 100, 139, 491
LweI	GCATC	4 cut(s)	139, 214, 424, 433
MaeI	CTAG	4 cut(s)	164, 300, 552, 729
MaeII	ACGT	2 cut(s)	598, 808
MaeIII	GTNAC	3 cut(s)	640, 917, 976
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MfeI	CAATTG	1 cut(s)	697
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	6 cut(s)	186, 328, 435, 697, 847, 913
MlyI	GAGTC	2 cut(s)	410, 701
MnlI	CCTC	4 cut(s)	69, 221, 615, 868
MroXI	GAANNNNTTC	2 cut(s)	512, 893
MseI	TTAA	2 cut(s)	420, 564
MslI	CAYNNNNRTG	1 cut(s)	837
MspA1I	CMGCKG	1 cut(s)	482
MunI	CAATTG	1 cut(s)	697
MwoI	GCNNNNNNNGC	4 cut(s)	101, 110, 149, 1026
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	5 cut(s)	89, 149, 401, 508, 886
NlaIV	GGNNCC	1 cut(s)	683
NmuCI	GTSAC	2 cut(s)	917, 976
PaeR7I	CTCGAG	1 cut(s)	963
PagI	TCATGA	2 cut(s)	145, 397
PciSI	GCTCTTC	2 cut(s)	900, 999
PdmI	GAANNNNTTC	2 cut(s)	512, 893
PkrI	GCNGC	4 cut(s)	97, 115, 154, 481
PleI	GAGTC	2 cut(s)	409, 701
PpsI	GAGTC	2 cut(s)	409, 701
Ppu21I	YACGTR	1 cut(s)	809
Psp1406I	AACGTT	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	500
PspN4I	GGNNCC	1 cut(s)	683
PspPI	GGNCC	1 cut(s)	716
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	162, 196, 550
RsaNI	GTAC	3 cut(s)	161, 195, 549
RseI	CAYNNNNRTG	1 cut(s)	837
SapI	GCTCTTC	2 cut(s)	900, 999
SaqAI	TTAA	2 cut(s)	420, 564
SatI	GCNGC	4 cut(s)	96, 114, 153, 480
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	1 cut(s)	716
ScaI	AGTACT	1 cut(s)	550
SchI	GAGTC	2 cut(s)	410, 701
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	4 cut(s)	139, 214, 424, 433
Sfr274I	CTCGAG	1 cut(s)	963
SinI	GGWCC	1 cut(s)	716
SlaI	CTCGAG	1 cut(s)	963
SmiMI	CAYNNNNRTG	1 cut(s)	837
SmlI	CTYRAG	1 cut(s)	963
SmoI	CTYRAG	1 cut(s)	963
Sse9I	AATT	6 cut(s)	186, 328, 435, 697, 847, 913
SsiI	CCGC	2 cut(s)	102, 471
SspMI	CTAG	4 cut(s)	164, 300, 552, 729
TaaI	ACNGT	4 cut(s)	69, 427, 558, 923
TaiI	ACGT	2 cut(s)	601, 811
TaqI	TCGA	3 cut(s)	362, 669, 964
TasI	AATT	6 cut(s)	186, 328, 435, 697, 847, 913
TatI	WGTACW	3 cut(s)	160, 194, 548
Tru1I	TTAA	2 cut(s)	420, 564
Tru9I	TTAA	2 cut(s)	420, 564
TscAI	CASTG	2 cut(s)	739, 928
TseFI	GTSAC	2 cut(s)	917, 976
TseI	GCWGC	4 cut(s)	95, 113, 152, 479
Tsp45I	GTSAC	2 cut(s)	917, 976
TspDTI	ATGAA	4 cut(s)	102, 386, 507, 521
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	2 cut(s)	739, 928
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	2 cut(s)	328, 847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	710
XhoI	CTCGAG	1 cut(s)	963
XmnI	GAANNNNTTC	2 cut(s)	512, 893
XspI	CTAG	4 cut(s)	164, 300, 552, 729
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.