Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0020591

Physical Location & Seq

Genomic Coordinates Reverse (-)

43392851 .. 43393501

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00198250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGACAACCTCACTATGCTCTAGGGTACTTTACAAGGCAAAAGCAATTGGAATGATGAGCGAGGGATATGTTTGGATCATGACCACTGGGATAACTAATAGATTAAGGATGACGGACGACTTTTCATTCCTTAATTCCATGGACGGAGTATTAGGTGTTCAAACCTATGTCCCAAAAACAAAAGAACTTCATCAAGAGTTCATACCACGGTGGCATCTGCAGTTCCTAAAAGACACTCCAACTAACAGTTTTTCTGCTAACTTGGATGTTTTTGCACTATGGGCTTATGATGCTGCTCATGCACTGGTCATAGCAATTGAAGAAGTAACTTGGAGTACAAGTAACATTGATTTCCAAAAGTCACATACTGCTCCCAACAACTCGACAGATCTTGAAAGTTTGGCGGTCTCTCAATATGGTCCAAAACTATGCAAAGCACTCTCAACCACTAGATTTCATGGCATTGCTGGAGATTTTAGACTTGTTGATAGGCAACTTCAATCCTCAACTTTTCAGATTGTTAACATAAATGGTGGTGCAACAAGAACAATCGGATTTTGGACACCAGAAAATGGACTACGTAAAAAGTTGGGCTCCTCAGTAAACACAGAAAAGGTTCAATTTCCAATGGAAATCTGGGACCCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

216

Amino Acids

24.29

Weight (kDa)

6.96

Isoelectric Point (pI)

29.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	4 - 178	6.5e-26	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020591)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304561
rosa_laevigata	RLG00000010967 RLG00000010968
rosa_multiflora	Rmu_co8256357.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198250
rosa_wichuraiana	Rw6G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	572
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	27, 337
AfiI	CCNNNNNNNGG	1 cut(s)	572
AgsI	TTSAA	5 cut(s)	161, 320, 395, 500, 620
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	1 cut(s)	83
ApeKI	GCWGC	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	419, 640
AvaII	GGWCC	2 cut(s)	419, 640
BanII	GRGCYC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	21, 450
BfmI	CTRYAG	1 cut(s)	218
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	1 cut(s)	294
BlsI	GCNGC	1 cut(s)	295
Bme18I	GGWCC	2 cut(s)	419, 640
BmgT120I	GGNCC	2 cut(s)	419, 640
BmiI	GGNNCC	3 cut(s)	595, 641, 642
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	2 cut(s)	223, 280
BmuI	ACTGGG	1 cut(s)	96
BpmI	CTGGAG	1 cut(s)	489
BsaAI	YACGTR	1 cut(s)	581
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	138, 206
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	572
Bse1I	ACTGG	2 cut(s)	91, 309
Bse3DI	GCAATG	1 cut(s)	462
BseDI	CCNNGG	2 cut(s)	138, 206
BseGI	GGATG	2 cut(s)	114, 271
BseLI	CCNNNNNNNGG	1 cut(s)	572
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	91, 309
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	572
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	1 cut(s)	155
Bso31I	GGTCTC	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp143I	GATC	2 cut(s)	75, 388
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	611
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	595, 641, 642
BspMAI	CTGCAG	1 cut(s)	222
BspPI	GGATC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	412
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	91, 309
BssECI	CCNNGG	2 cut(s)	138, 206
BssMI	GATC	2 cut(s)	75, 388
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	210, 248
BstBAI	YACGTR	1 cut(s)	581
BstDEI	CTNAG	1 cut(s)	598
BstDSI	CCRYGG	2 cut(s)	138, 206
BstF5I	GGATG	2 cut(s)	114, 271
BstKTI	GATC	2 cut(s)	78, 391
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	75, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	281, 290, 299
BstSFI	CTRYAG	1 cut(s)	218
BstSNI	TACGTA	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BtgI	CCRYGG	2 cut(s)	138, 206
BtsCI	GGATG	2 cut(s)	114, 271
BtsIMutI	CAGTG	2 cut(s)	84, 302
CciI	TCATGA	1 cut(s)	78
Cfr13I	GGNCC	2 cut(s)	419, 640
Csp6I	GTAC	2 cut(s)	26, 336
CviAII	CATG	4 cut(s)	79, 139, 299, 458
CviJI	RGCY	2 cut(s)	284, 594
CviKI_1	RGCY	2 cut(s)	284, 594
CviQI	GTAC	2 cut(s)	26, 336
DdeI	CTNAG	1 cut(s)	598
DpnI	GATC	2 cut(s)	77, 390
DpnII	GATC	2 cut(s)	75, 388
Eco105I	TACGTA	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	138
Eco24I	GRGCYC	1 cut(s)	596
Eco31I	GGTCTC	1 cut(s)	412
Eco47I	GGWCC	2 cut(s)	419, 640
EcoO109I	RGGNCCY	1 cut(s)	640
EcoT14I	CCWWGG	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	4 cut(s)	82, 142, 302, 461
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	78, 138, 298, 457
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	2 cut(s)	121, 278
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	294
FspBI	CTAG	2 cut(s)	21, 450
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	489
Hin1II	CATG	4 cut(s)	82, 142, 302, 461
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HpaI	GTTAAC	1 cut(s)	523
Hpy166II	GTNNAC	2 cut(s)	523, 604
Hpy188I	TCNGA	2 cut(s)	516, 554
Hpy188III	TCNNGA	3 cut(s)	79, 194, 392
Hpy8I	GTNNAC	2 cut(s)	523, 604
HpyCH4III	ACNGT	2 cut(s)	210, 248
HpyCH4IV	ACGT	1 cut(s)	580
HpyCH4V	TGCA	5 cut(s)	220, 275, 302, 432, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	281, 290, 299
HpyF3I	CTNAG	1 cut(s)	598
HpySE526I	ACGT	1 cut(s)	580
Hsp92II	CATG	4 cut(s)	82, 142, 302, 461
KflI	GGGWCCC	1 cut(s)	640
KspAI	GTTAAC	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	75, 388
LmnI	GCTCC	2 cut(s)	376, 599
LpnPI	CCDG	5 cut(s)	72, 290, 453, 579, 622
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	2 cut(s)	223, 280
MaeI	CTAG	2 cut(s)	21, 450
MaeII	ACGT	1 cut(s)	580
MaeIII	GTNAC	3 cut(s)	325, 341, 360
MalI	GATC	2 cut(s)	77, 390
MboI	GATC	2 cut(s)	75, 388
MboII	GAAGA	1 cut(s)	332
MfeI	CAATTG	2 cut(s)	45, 315
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	4 cut(s)	45, 133, 315, 620
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	19, 55, 514, 607
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	3 cut(s)	104, 132, 522
MunI	CAATTG	2 cut(s)	45, 315
MwoI	GCNNNNNNNGC	3 cut(s)	281, 290, 299
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	2 cut(s)	75, 388
NlaIII	CATG	4 cut(s)	82, 142, 302, 461
NlaIV	GGNNCC	3 cut(s)	595, 641, 642
NmuCI	GTSAC	1 cut(s)	360
PagI	TCATGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	572
PkrI	GCNGC	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	581
PpuMI	RGGWCCY	1 cut(s)	640
Psp5II	RGGWCCY	1 cut(s)	640
PspN4I	GGNNCC	3 cut(s)	595, 641, 642
PspPI	GGNCC	2 cut(s)	419, 640
PspPPI	RGGWCCY	1 cut(s)	640
PsrI	GAACNNNNNNTAC	2 cut(s)	141, 173
PstI	CTGCAG	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	2 cut(s)	27, 337
RsaNI	GTAC	2 cut(s)	26, 336
SaqAI	TTAA	3 cut(s)	104, 132, 522
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	2 cut(s)	75, 388
Sau96I	GGNCC	2 cut(s)	419, 640
SduI	GDGCHC	1 cut(s)	596
SetI	ASST	5 cut(s)	11, 157, 167, 583, 618
SfaNI	GCATC	2 cut(s)	223, 280
SfcI	CTRYAG	1 cut(s)	218
SinI	GGWCC	2 cut(s)	419, 640
SnaBI	TACGTA	1 cut(s)	581
Sse9I	AATT	4 cut(s)	45, 133, 315, 620
SsiI	CCGC	1 cut(s)	404
SspMI	CTAG	2 cut(s)	21, 450
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	210, 248
TaiI	ACGT	1 cut(s)	583
TaqI	TCGA	1 cut(s)	383
TasI	AATT	4 cut(s)	45, 133, 315, 620
TatI	WGTACW	1 cut(s)	335
Tru1I	TTAA	3 cut(s)	104, 132, 522
Tru9I	TTAA	3 cut(s)	104, 132, 522
TscAI	CASTG	2 cut(s)	91, 309
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	293
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	4 cut(s)	114, 179, 190, 446
TspGWI	ACGGA	2 cut(s)	128, 159
TspRI	CASTG	2 cut(s)	91, 309
Van91I	CCANNNNNTGG	1 cut(s)	572
VpaK11BI	GGWCC	2 cut(s)	419, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	633
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	2 cut(s)	21, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.