Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0020591

Physical Location & Seq

Genomic Coordinates Reverse (-)

5756130 .. 5757009

Gene Structure 880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGATAAGTGAAGGCTATGTTTGGATCATGACTTCTTGGATAACTAATAATTTGAAGTCTATGAAACACCGGTTCTACATGGACGGGGTATTACGTGTGGAAACTTATGTCCCATTGACAAAAGAGCTTCAAGAGTTCTTACCACGGTGGAAGAGGCAGTCCCATGAAGACGCTGCAACCGCCATCTTTGCTGCTAACTTGGATGTTTTTGGACTTTGGGCTCATAATGCTGCTATTTCACTAGCCATATCTGTTGAAGGAGTAATTGGGAGTACAAGTAGTTATGGCCTCCAAAAGTCAGATGCTGTTATCAACTCAACAGATCTTTCTAATCTTCCTGTCTCTCAATATGGTTCAAAACTGCGCAAAGCCTTGTCGAGTGTTAAATTTCAAGGCCTAGCTGGAAATTTCAGCCTTGTTGATGGGGAACTTCAATCATCGACTTTCCAGATTGATAATGTCATTGGTGGTAGACCAAGGGCAATTGGATATTGGGAACCACAAAATGGACTAGTGAAAGAGTTGGGTTCTTCAACAAACTCGGGCAAAATTTTAAACCTCCAACTGCAATCTTCGATCAATTATATGGCCAGGAGACTCTCTTTCTGTTCCCAAGGGATGGGAGATTCCTACAAACGTATTGATGTCTTTGAGGCTGCATTGGAAATGTTACCATATGCTCTTCCTTATGAGTTCATTCCTTTTGCAAAGTCTGATGGCTCTAGTGCTGGCACGAACAATGATTTATGCTATCAACCGTATCGTGGGGTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

259

Amino Acids

28.58

Weight (kDa)

6.91

Isoelectric Point (pI)

46.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANF_receptor	PF01094	1 - 155	8.2e-18	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020591)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304561
rosa_laevigata	RLG00000010967 RLG00000010968
rosa_multiflora	Rmu_co8256357.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198250
rosa_wichuraiana	Rw6G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	365
AccB7I	CCANNNNNTGG	2 cut(s)	506, 619
AccI	GTMKAC	1 cut(s)	472
AciI	CCGC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	32
AcoI	YGGCCR	1 cut(s)	588
AcsI	RAATTY	3 cut(s)	386, 406, 549
AfaI	GTAC	2 cut(s)	274, 771
AfiI	CCNNNNNNNGG	3 cut(s)	506, 619, 764
AflIII	ACRYGT	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	69
AgsI	TTSAA	7 cut(s)	55, 131, 257, 357, 392, 434, 534
AhlI	ACTAGT	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	590
AjuI	GAANNNNNNNTTGG	2 cut(s)	249, 281
AluBI	AGCT	2 cut(s)	127, 401
AluI	AGCT	2 cut(s)	127, 401
Alw26I	GTCTC	2 cut(s)	346, 589
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	3 cut(s)	286, 394, 588
ApeKI	GCWGC	4 cut(s)	173, 191, 230, 656
ApoI	RAATTY	3 cut(s)	386, 406, 549
AsiGI	ACCGGT	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	366
AvaI	CYCGRG	1 cut(s)	541
BalI	TGGCCA	1 cut(s)	590
BanII	GRGCYC	1 cut(s)	223
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	160, 178, 217, 643
BccI	CCATC	4 cut(s)	191, 416, 613, 710
BciT130I	CCWGG	1 cut(s)	592
BcoDI	GTCTC	2 cut(s)	346, 589
BcuI	ACTAGT	1 cut(s)	511
BfaI	CTAG	4 cut(s)	242, 398, 512, 723
BglII	AGATCT	1 cut(s)	322
BisI	GCNGC	4 cut(s)	174, 192, 231, 657
BlsI	GCNGC	4 cut(s)	175, 193, 232, 658
Bme1390I	CCNGG	1 cut(s)	592
BmeT110I	CYCGRG	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	498
BmrFI	CCNGG	1 cut(s)	592
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	143, 476, 613
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 619, 764
Bse118I	RCCGGY	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	592
BseDI	CCNNGG	3 cut(s)	143, 476, 613
BseGI	GGATG	2 cut(s)	208, 624
BseLI	CCNNNNNNNGG	3 cut(s)	506, 619, 764
BseXI	GCAGC	4 cut(s)	160, 178, 217, 643
BshFI	GGCC	3 cut(s)	288, 396, 590
BshTI	ACCGGT	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	95, 145
BslI	CCNNNNNNNGG	3 cut(s)	506, 619, 764
BsmAI	GTCTC	2 cut(s)	346, 589
BsmFI	GGGAC	2 cut(s)	95, 145
BsnI	GGCC	3 cut(s)	288, 396, 590
BsoBI	CYCGRG	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	24, 322, 576
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	3 cut(s)	288, 396, 590
BspHI	TCATGA	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	32
BspQI	GCTCTTC	1 cut(s)	687
BsrFI	RCCGGY	1 cut(s)	69
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	3 cut(s)	143, 476, 613
BssMI	GATC	3 cut(s)	24, 322, 576
BssT1I	CCWWGG	2 cut(s)	476, 613
Bst2UI	CCWGG	1 cut(s)	592
Bst4CI	ACNGT	2 cut(s)	147, 759
Bst6I	CTCTTC	2 cut(s)	146, 687
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	730
BstDSI	CCRYGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	208, 624
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	3 cut(s)	27, 325, 579
BstMAI	GTCTC	2 cut(s)	346, 589
BstMBI	GATC	3 cut(s)	24, 322, 576
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 227
BstNI	CCWGG	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	590
BstV1I	GCAGC	4 cut(s)	160, 178, 217, 643
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	288, 396, 590
BtgI	CCRYGG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	208, 624
Cac8I	GCNNGC	1 cut(s)	730
CaiI	CAGNNNCTG	1 cut(s)	305
CciI	TCATGA	1 cut(s)	27
CfoI	GCGC	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	69
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	2 cut(s)	273, 770
CspAI	ACCGGT	1 cut(s)	69
CviAII	CATG	3 cut(s)	28, 79, 164
CviQI	GTAC	2 cut(s)	273, 770
DpnI	GATC	3 cut(s)	26, 324, 578
DpnII	GATC	3 cut(s)	24, 322, 576
DraI	TTTAAA	1 cut(s)	555
EaeI	YGGCCR	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	146, 687
EarI	CTCTTC	2 cut(s)	146, 687
Eco130I	CCWWGG	2 cut(s)	476, 613
Eco147I	AGGCCT	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	590
EcoT14I	CCWWGG	2 cut(s)	476, 613
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	2 cut(s)	476, 613
FaeI	CATG	3 cut(s)	31, 82, 167
FaqI	GGGAC	2 cut(s)	95, 145
FatI	CATG	3 cut(s)	27, 78, 163
FauNDI	CATATG	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	174, 192, 231, 657
FokI	GGATG	2 cut(s)	215, 631
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	4 cut(s)	174, 192, 231, 657
FspBI	CTAG	4 cut(s)	242, 398, 512, 723
FspI	TGCGCA	1 cut(s)	365
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	4 cut(s)	174, 192, 231, 657
HaeIII	GGCC	3 cut(s)	288, 396, 590
HapII	CCGG	1 cut(s)	70
HgaI	GACGC	1 cut(s)	179
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	31, 82, 167
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HinfI	GANTC	2 cut(s)	597, 626
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	473
Hpy188I	TCNGA	2 cut(s)	301, 715
Hpy188III	TCNNGA	3 cut(s)	28, 131, 448
Hpy8I	GTNNAC	1 cut(s)	473
HpyAV	CCTTC	2 cut(s)	5, 251
HpyCH4III	ACNGT	2 cut(s)	147, 759
HpyCH4IV	ACGT	2 cut(s)	94, 637
HpyCH4V	TGCA	4 cut(s)	176, 568, 659, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 227
HpySE526I	ACGT	2 cut(s)	94, 637
Hsp92II	CATG	3 cut(s)	31, 82, 167
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	3 cut(s)	24, 322, 576
LguI	GCTCTTC	1 cut(s)	687
LpnPI	CCDG	7 cut(s)	83, 351, 387, 461, 577, 604, 714
Lsp1109I	GCAGC	4 cut(s)	160, 178, 217, 643
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	4 cut(s)	242, 398, 512, 723
MaeII	ACGT	2 cut(s)	94, 637
MaeIII	GTNAC	1 cut(s)	669
MalI	GATC	3 cut(s)	26, 324, 578
MboI	GATC	3 cut(s)	24, 322, 576
MboII	GAAGA	6 cut(s)	163, 179, 326, 522, 564, 674
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	590
MluCI	AATT	7 cut(s)	49, 264, 386, 406, 483, 549, 580
MluNI	TGGCCA	1 cut(s)	590
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	4 cut(s)	147, 299, 569, 646
Mox20I	TGGCCA	1 cut(s)	590
MscI	TGGCCA	1 cut(s)	590
MseI	TTAA	2 cut(s)	384, 554
Msp20I	TGGCCA	1 cut(s)	590
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	1 cut(s)	592
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	592
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 227
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	3 cut(s)	24, 322, 576
NlaIII	CATG	3 cut(s)	31, 82, 167
NlaIV	GGNNCC	1 cut(s)	498
NsbI	TGCGCA	1 cut(s)	365
PagI	TCATGA	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	626
PflMI	CCANNNNNTGG	2 cut(s)	506, 619
PinAI	ACCGGT	1 cut(s)	69
PkrI	GCNGC	4 cut(s)	175, 193, 232, 658
PleI	GAGTC	1 cut(s)	591
PpsI	GAGTC	1 cut(s)	591
Ppu21I	YACGTR	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	590
PspN4I	GGNNCC	1 cut(s)	498
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	274, 771
RsaNI	GTAC	2 cut(s)	273, 770
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	2 cut(s)	384, 554
SatI	GCNGC	4 cut(s)	174, 192, 231, 657
Sau3AI	GATC	3 cut(s)	24, 322, 576
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	1 cut(s)	592
SduI	GDGCHC	1 cut(s)	223
SetI	ASST	5 cut(s)	97, 129, 403, 561, 640
SfaNI	GCATC	1 cut(s)	292
SpeI	ACTAGT	1 cut(s)	511
Sse9I	AATT	7 cut(s)	49, 264, 386, 406, 483, 549, 580
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	180
SspMI	CTAG	4 cut(s)	242, 398, 512, 723
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	590
StyI	CCWWGG	2 cut(s)	476, 613
TaaI	ACNGT	2 cut(s)	147, 759
TaiI	ACGT	2 cut(s)	97, 640
TaqI	TCGA	3 cut(s)	377, 440, 575
TasI	AATT	7 cut(s)	49, 264, 386, 406, 483, 549, 580
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	2 cut(s)	384, 554
Tru9I	TTAA	2 cut(s)	384, 554
TseI	GCWGC	4 cut(s)	173, 191, 230, 656
TspDTI	ATGAA	3 cut(s)	77, 180, 685
Van91I	CCANNNNNTGG	2 cut(s)	506, 619
XapI	RAATTY	3 cut(s)	386, 406, 549
XmiI	GTMKAC	1 cut(s)	472
XspI	CTAG	4 cut(s)	242, 398, 512, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.