Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0020591

Physical Location & Seq

Genomic Coordinates Reverse (-)

5754583 .. 5755265

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010967

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAAGAAATTGATGAAGCTCTTTCAAAAGGGAGTGCAAATGGTGGAGTTGCTGCTGTTGTGGATGAAACCCCCAGCACGAAGCTTTTCCTTGCAAAATCCTGCAACATATATGCAATGAGTACTAGACCGTTGTTTAAAACTGATGGCCTTGCCTTTGTGTTTGCGAAACGTTCTCCTCTTTTACCTGATATTTCACAGGCAATCCTGAATGTAACAGGAGGACAGAAGATAATGGACATCGAAAACAAATGGTTCCGTAAGCACAGCAATTGCCAAGACTCAGGTGGTCCAGACACTTCTAGCACTGGTCTTCGTGCATATAGCTTTTTGGTCCTATTTCTCATTGTTGGTGGTGATTCAATGCTCGCTCTCATCTTACGTGCAGTTTCTTTCGTGAACAAGCATAAGGATGTCTGGGATTCAGAAGCCTCGATCTCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

149

Amino Acids

16.0

Weight (kDa)

6.08

Isoelectric Point (pI)

50.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020591)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304561
rosa_laevigata	RLG00000010967 RLG00000010968
rosa_multiflora	Rmu_co8256357.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198250
rosa_wichuraiana	Rw6G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	172
AfaI	GTAC	1 cut(s)	124
AgsI	TTSAA	2 cut(s)	27, 363
AluBI	AGCT	3 cut(s)	20, 85, 327
AluI	AGCT	3 cut(s)	20, 85, 327
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	86
AspS9I	GGNCC	2 cut(s)	290, 334
AsuHPI	GGTGA	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	290, 334
BbsI	GAAGAC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	126, 303
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
BmcAI	AGTACT	1 cut(s)	124
Bme18I	GGWCC	2 cut(s)	290, 334
BmgT120I	GGNCC	2 cut(s)	290, 334
BmiI	GGNNCC	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	123
BseGI	GGATG	2 cut(s)	70, 418
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	405
BshFI	GGCC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	435
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	123
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	383
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	70, 418
BstKTI	GATC	1 cut(s)	438
BstMBI	GATC	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	70, 418
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	369
Cfr13I	GGNCC	2 cut(s)	290, 334
Csp6I	GTAC	1 cut(s)	123
CviJI	RGCY	5 cut(s)	20, 85, 150, 327, 431
CviKI_1	RGCY	5 cut(s)	20, 85, 150, 327, 431
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	283
DpnI	GATC	1 cut(s)	437
DpnII	GATC	1 cut(s)	435
DraI	TTTAAA	1 cut(s)	139
Eco47I	GGWCC	2 cut(s)	290, 334
FaiI	YATR	8 cut(s)	110, 112, 114, 322, 324, 408, 443, 445
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	2 cut(s)	77, 425
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	126, 303
GluI	GCNGC	1 cut(s)	54
GsaI	CCCAGC	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	3 cut(s)	281, 359, 422
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	3 cut(s)	208, 293, 397
Hpy8I	GTNNAC	1 cut(s)	400
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4IV	ACGT	2 cut(s)	172, 382
HpyCH4V	TGCA	6 cut(s)	38, 95, 105, 116, 320, 386
HpyF3I	CTNAG	1 cut(s)	283
HpySE526I	ACGT	2 cut(s)	172, 382
Kzo9I	GATC	1 cut(s)	435
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	2 cut(s)	126, 303
MaeII	ACGT	2 cut(s)	172, 382
MaeIII	GTNAC	1 cut(s)	214
MalI	GATC	1 cut(s)	437
MboI	GATC	1 cut(s)	435
MboII	GAAGA	3 cut(s)	17, 241, 305
MfeI	CAATTG	1 cut(s)	271
MluCI	AATT	2 cut(s)	9, 271
MlyI	GAGTC	1 cut(s)	275
MnlI	CCTC	3 cut(s)	189, 215, 442
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	411
MunI	CAATTG	1 cut(s)	271
NdeII	GATC	1 cut(s)	435
NlaIV	GGNNCC	1 cut(s)	257
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	359, 422
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
Ppu21I	YACGTR	1 cut(s)	383
Psp1406I	AACGTT	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	290, 334
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	435
Sau96I	GGNCC	2 cut(s)	290, 334
ScaI	AGTACT	1 cut(s)	124
SchI	GAGTC	1 cut(s)	275
SetI	ASST	7 cut(s)	22, 87, 175, 190, 289, 329, 385
SinI	GGWCC	2 cut(s)	290, 334
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	2 cut(s)	9, 271
SspMI	CTAG	2 cut(s)	126, 303
TaaI	ACNGT	1 cut(s)	132
TaiI	ACGT	2 cut(s)	175, 385
TaqI	TCGA	2 cut(s)	243, 434
TasI	AATT	2 cut(s)	9, 271
TatI	WGTACW	1 cut(s)	122
TfiI	GAWTC	2 cut(s)	359, 422
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	2 cut(s)	30, 81
TspGWI	ACGGA	1 cut(s)	248
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	290, 334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	2 cut(s)	126, 303
ZrmI	AGTACT	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.