Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256357.1

Orthogroup ID

OG0020591

Physical Location & Seq

Genomic Coordinates Forward (+)

71 .. 800

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256357.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 730 bp

atgcaaactagggtctttgttctgcacatgacgcctgaactatgttctaggctagttcacaaggcaaatgagattggaatgatgactgagggctatgtttggatcacaaccaatgggttaacgaatagtttaaagactatcgattttgagttccttgatttgattgacggagtattaggtgtagaaacttatatcccaaggacaaaacaacttcaacagttcatgtcacgattgcatcggcagattcaaaaatacactacagtccgtttaaacttggatgttttcggactttgggcgtatgatgctacttttgcactagccatggctattgaacaagtatatgggaatacaactagtgttgtcccccaagacttaaatgttgcttccaataaactgactgatcttgaaagtgttgcggtttctcgagatggtccacaacttcgccaagctctgttaactactagatttcaaggcattgctggagatttcagccttattgatgggcaacttcaatcatcaacttttcagattgtgaatataaacggtggtgcatcaaggaaaataggattttggacaccgcaacatggactggtgaacaagacattcctcagttccaatattggacctattatatggccgggagattctctctatgttccaaaaggatgggagatcccaacgaatgggattaaactgaaaataggagttcctgtgaaggatggttttattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

243

Amino Acids

27.08

Weight (kDa)

7.84

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020591)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304561
rosa_laevigata	RLG00000010967 RLG00000010968
rosa_multiflora	Rmu_co8256357.1_g000001
rosa_roxburghii	Rroxscaffold_7G00198250
rosa_wichuraiana	Rw6G038660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	683
AciI	CCGC	2 cut(s)	416, 578
AclWI	GGATC	2 cut(s)	110, 667
AcoI	YGGCCR	1 cut(s)	635
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	584, 683
AgsI	TTSAA	6 cut(s)	215, 248, 332, 407, 470, 512
AhlI	ACTAGT	1 cut(s)	353
AluBI	AGCT	1 cut(s)	449
AluI	AGCT	1 cut(s)	449
AlwI	GGATC	2 cut(s)	110, 667
Ama87I	CYCGRG	1 cut(s)	423
AoxI	GGCC	1 cut(s)	635
AspS9I	GGNCC	2 cut(s)	431, 623
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	604
AvaI	CYCGRG	1 cut(s)	423
AvaII	GGWCC	2 cut(s)	431, 623
BccI	CCATC	4 cut(s)	422, 494, 660, 713
BcnI	CCSGG	1 cut(s)	639
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	6 cut(s)	9, 48, 53, 317, 354, 462
BfmI	CTRYAG	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	2 cut(s)	431, 623
BmeT110I	CYCGRG	1 cut(s)	423
BmgT120I	GGNCC	2 cut(s)	431, 623
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	3 cut(s)	244, 292, 560
BplI	GAGNNNNNCTC	2 cut(s)	633, 665
BpmI	CTGGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	639
Bsa29I	ATCGAT	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	197, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 683
Bse1I	ACTGG	1 cut(s)	594
Bse3DI	GCAATG	1 cut(s)	474
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	197, 321
BseGI	GGATG	3 cut(s)	283, 671, 724
BseLI	CCNNNNNNNGG	2 cut(s)	584, 683
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	78, 622
BseNI	ACTGG	1 cut(s)	594
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	1 cut(s)	637
BshVI	ATCGAT	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	638
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	2 cut(s)	584, 683
BsmFI	GGGAC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	637
BsoBI	CYCGRG	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	102, 400, 672
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	2 cut(s)	416, 578
BspANI	GGCC	1 cut(s)	637
BspCNI	CTCAG	2 cut(s)	79, 621
BspDI	ATCGAT	1 cut(s)	141
BspPI	GGATC	2 cut(s)	110, 667
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	594
BssECI	CCNNGG	2 cut(s)	197, 321
BssMI	GATC	3 cut(s)	102, 400, 672
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	2 cut(s)	197, 321
Bst4CI	ACNGT	3 cut(s)	219, 262, 545
BstACI	GRCGYC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	87, 608
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	283, 671, 724
BstKTI	GATC	3 cut(s)	105, 403, 675
BstMBI	GATC	3 cut(s)	102, 400, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	31, 302, 311
BstSCI	CCNGG	1 cut(s)	637
BstSFI	CTRYAG	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	672
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	672
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	637
BsuTUI	ATCGAT	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	283, 671, 724
Cfr13I	GGNCC	2 cut(s)	431, 623
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	1 cut(s)	40
CviAII	CATG	4 cut(s)	28, 223, 322, 584
CviJI	RGCY	7 cut(s)	52, 93, 320, 326, 449, 492, 637
CviKI_1	RGCY	7 cut(s)	52, 93, 320, 326, 449, 492, 637
DdeI	CTNAG	2 cut(s)	87, 608
DpnI	GATC	3 cut(s)	104, 402, 674
DpnII	GATC	3 cut(s)	102, 400, 672
DraI	TTTAAA	2 cut(s)	132, 270
EaeI	YGGCCR	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	197, 321
Eco47I	GGWCC	2 cut(s)	431, 623
Eco88I	CYCGRG	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	197, 321
ErhI	CCWWGG	2 cut(s)	197, 321
FaeI	CATG	4 cut(s)	31, 226, 325, 587
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	4 cut(s)	27, 222, 321, 583
FokI	GGATG	2 cut(s)	290, 678
FspBI	CTAG	6 cut(s)	9, 48, 53, 317, 354, 462
GsuI	CTGGAG	1 cut(s)	501
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	1 cut(s)	638
HgaI	GACGC	1 cut(s)	40
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	4 cut(s)	31, 226, 325, 587
HincII	GTYRAC	2 cut(s)	120, 456
HindII	GTYRAC	2 cut(s)	120, 456
HinfI	GANTC	2 cut(s)	244, 644
HpaI	GTTAAC	2 cut(s)	120, 456
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	5 cut(s)	58, 120, 434, 456, 595
Hpy188I	TCNGA	2 cut(s)	287, 528
Hpy188III	TCNNGA	4 cut(s)	228, 404, 423, 425
Hpy8I	GTNNAC	5 cut(s)	58, 120, 434, 456, 595
HpyAV	CCTTC	1 cut(s)	709
HpyCH4III	ACNGT	3 cut(s)	219, 262, 545
HpyCH4V	TGCA	5 cut(s)	4, 25, 235, 314, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	31, 302, 311
HpyF3I	CTNAG	2 cut(s)	87, 608
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	4 cut(s)	31, 226, 325, 587
KspAI	GTTAAC	2 cut(s)	120, 456
Kzo9I	GATC	3 cut(s)	102, 400, 672
LpnPI	CCDG	5 cut(s)	48, 465, 575, 651, 723
LweI	GCATC	3 cut(s)	244, 292, 560
MaeI	CTAG	6 cut(s)	9, 48, 53, 317, 354, 462
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	3 cut(s)	104, 402, 674
MboI	GATC	3 cut(s)	102, 400, 672
MflI	RGATCY	1 cut(s)	672
MnlI	CCTC	2 cut(s)	82, 617
MseI	TTAA	6 cut(s)	119, 131, 269, 374, 455, 690
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	639
MssI	GTTTAAAC	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	31, 302, 311
NciI	CCSGG	1 cut(s)	639
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	3 cut(s)	102, 400, 672
NlaIII	CATG	4 cut(s)	31, 226, 325, 587
NmuCI	GTSAC	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	423
PfeI	GAWTC	2 cut(s)	244, 644
PflMI	CCANNNNNTGG	1 cut(s)	683
PmeI	GTTTAAAC	1 cut(s)	270
PspPI	GGNCC	2 cut(s)	431, 623
PsuI	RGATCY	1 cut(s)	672
SaqAI	TTAA	6 cut(s)	119, 131, 269, 374, 455, 690
Sau3AI	GATC	3 cut(s)	102, 400, 672
Sau96I	GGNCC	2 cut(s)	431, 623
ScrFI	CCNGG	1 cut(s)	639
SetI	ASST	3 cut(s)	181, 451, 628
SfaNI	GCATC	3 cut(s)	244, 292, 560
SfcI	CTRYAG	1 cut(s)	258
Sfr274I	CTCGAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	431, 623
SlaI	CTCGAG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	423
SmoI	CTYRAG	1 cut(s)	423
SpeI	ACTAGT	1 cut(s)	353
SsiI	CCGC	2 cut(s)	416, 578
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	6 cut(s)	9, 48, 53, 317, 354, 462
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	2 cut(s)	197, 321
TaaI	ACNGT	3 cut(s)	219, 262, 545
TaqI	TCGA	2 cut(s)	141, 424
TfiI	GAWTC	2 cut(s)	244, 644
Tru1I	TTAA	6 cut(s)	119, 131, 269, 374, 455, 690
Tru9I	TTAA	6 cut(s)	119, 131, 269, 374, 455, 690
TseFI	GTSAC	1 cut(s)	225
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	211
TspGWI	ACGGA	2 cut(s)	183, 254
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	431, 623
XhoI	CTCGAG	1 cut(s)	423
XspI	CTAG	6 cut(s)	9, 48, 53, 317, 354, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.