RchiOBHm_Chr6g0311721

Pleckstrin homology domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
68603936 .. 68605111
1176 bp
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UTR
Exon/CDS
Intron
PRQ28036

Sequence Viewer

Length: 168 bp
ATGTACTTAATCGAGGATACTGAGAATGAGAAGAAGGAGTGGATCAACTCCATCAGACGCTCGTTAGTCCAGCACTTCAGATCCCTCACCGATTATGAGGTCGTCGATTACGATAACTGTCGGCTGGCTTTTGTTCGTTTGTGGCTTCTTTGTTTATGTTTTGTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

6.79

Weight (kDa)

5.15

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019738)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 50, 75
AcuI CTGAAG 1 cut(s) 61
AfaI GTAC 1 cut(s) 5
AlwI GGATC 2 cut(s) 50, 75
AsuHPI GGTGA 1 cut(s) 79
BccI CCATC 1 cut(s) 59
BciVI GTATCC 1 cut(s) 10
BfuI GTATCC 1 cut(s) 10
BseMII CTCAG 1 cut(s) 12
Bsp143I GATC 2 cut(s) 42, 80
BspCNI CTCAG 1 cut(s) 13
BspPI GGATC 2 cut(s) 50, 75
BssMI GATC 2 cut(s) 42, 80
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 1 cut(s) 21
BstKTI GATC 2 cut(s) 45, 83
BstMBI GATC 2 cut(s) 42, 80
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BsuI GTATCC 1 cut(s) 10
Cac8I GCNNGC 1 cut(s) 126
CseI GACGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 4
CviJI RGCY 3 cut(s) 124, 128, 145
CviKI_1 RGCY 3 cut(s) 124, 128, 145
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 44, 82
DpnII GATC 2 cut(s) 42, 80
Eco57I CTGAAG 1 cut(s) 61
FaiI YATR 2 cut(s) 96, 157
HgaI GACGC 1 cut(s) 66
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 56, 80
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 21
Kzo9I GATC 2 cut(s) 42, 80
LpnPI CCDG 2 cut(s) 83, 110
MalI GATC 2 cut(s) 44, 82
MboI GATC 2 cut(s) 42, 80
MboII GAAGA 1 cut(s) 43
MflI RGATCY 1 cut(s) 80
MnlI CCTC 3 cut(s) 7, 91, 95
MseI TTAA 1 cut(s) 8
NdeII GATC 2 cut(s) 42, 80
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PsuI RGATCY 1 cut(s) 80
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 8
Sau3AI GATC 2 cut(s) 42, 80
SetI ASST 1 cut(s) 102
SgeI CNNG 4 cut(s) 25, 73, 82, 137
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 12, 105
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.