Rmu_sc0000548.1_g000017

Pleckstrin homology domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000548.1
OG0019738
Physical Location & Seq
Forward (+)
80874 .. 81167
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000548.1_g000017.1.cds

Sequence Viewer

Length: 294 bp
atgcggcctgatattcaacgatccggcatgcgccgtctcttgctcctccaccaccgctactgctgcttttctctgctttatcttccgaatctccggcttctttcactccacaccatctccagcaacctcttcctcatccccttcaccaccaccgccgctggttcgtccatgtacttaatcgcggatactgagaaggagaataaggagtggataaactccatcagacgctcgttagtccagcactccagatccctcaccgattctgaggtcgtcaattacgataactaccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

97

Amino Acids

11.4

Weight (kDa)

9.44

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019738)

Species Orthologous Gene IDs
malus_domestica MD10G1151000.v1.1
rosa_chinensis RchiOBHm_Chr6g0311721
rosa_multiflora Rmu_sc0000548.1_g000017 Rmu_sc0001836.1_g000013 Rmu_sc0003502.1_g000002 Rmu_sc0018663.1_g000001
rosa_samantha Rh3DG349600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 5 cut(s) 4, 55, 153, 156, 182
AclWI GGATC 2 cut(s) 15, 243
AfaI GTAC 1 cut(s) 173
AgeI ACCGGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 15, 243
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 63
AsiGI ACCGGT 1 cut(s) 288
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 136, 247
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 122, 227
BceAI ACGGC 1 cut(s) 18
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 41
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 3 cut(s) 5, 64, 156
BlsI GCNGC 3 cut(s) 6, 65, 157
BpmI CTGGAG 2 cut(s) 103, 229
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse118I RCCGGY 1 cut(s) 288
BseGI GGATG 1 cut(s) 135
BseMII CTCAG 2 cut(s) 180, 255
BseRI GAGGAG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 50
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 7
BshTI ACCGGT 1 cut(s) 288
BsiSI CCGG 3 cut(s) 24, 94, 289
BsmAI GTCTC 1 cut(s) 41
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 2 cut(s) 20, 248
BspACI CCGC 5 cut(s) 4, 55, 153, 156, 182
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 181, 256
BspFNI CGCG 1 cut(s) 182
BspPI GGATC 2 cut(s) 15, 243
BsrFI RCCGGY 1 cut(s) 288
BssAI RCCGGY 1 cut(s) 288
BssMI GATC 2 cut(s) 20, 248
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 189, 264
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 23, 251
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 20, 248
BstMWI GCNNNNNNNGC 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 31
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 288
CseI GACGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 172
CspAI ACCGGT 1 cut(s) 288
CviAII CATG 2 cut(s) 28, 169
CviJI RGCY 2 cut(s) 7, 97
CviKI_1 RGCY 2 cut(s) 7, 97
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 2 cut(s) 189, 264
DpnI GATC 2 cut(s) 22, 250
DpnII GATC 2 cut(s) 20, 248
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 2 cut(s) 31, 172
FaiI YATR 2 cut(s) 29, 170
FatI CATG 2 cut(s) 27, 168
Fnu4HI GCNGC 3 cut(s) 5, 64, 156
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 3 cut(s) 5, 64, 156
GlaI GCGC 1 cut(s) 32
GluI GCNGC 3 cut(s) 5, 64, 156
GsuI CTGGAG 2 cut(s) 103, 229
HaeIII GGCC 1 cut(s) 7
HapII CCGG 3 cut(s) 24, 94, 289
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 33
Hin1II CATG 2 cut(s) 31, 172
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 2 cut(s) 88, 260
HpaII CCGG 3 cut(s) 24, 94, 289
HphI GGTGA 2 cut(s) 136, 247
Hpy188I TCNGA 3 cut(s) 87, 224, 265
Hpy188III TCNNGA 1 cut(s) 246
HpyAV CCTTC 2 cut(s) 151, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 63
HpyF3I CTNAG 2 cut(s) 189, 264
Hsp92II CATG 2 cut(s) 31, 172
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 20, 248
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 7 cut(s) 21, 37, 107, 133, 144, 251, 259
Lsp1109I GCAGC 1 cut(s) 50
MalI GATC 2 cut(s) 22, 250
MboI GATC 2 cut(s) 20, 248
MboII GAAGA 2 cut(s) 74, 121
MflI RGATCY 1 cut(s) 248
MluCI AATT 1 cut(s) 274
MnlI CCTC 5 cut(s) 56, 137, 143, 259, 263
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 3 cut(s) 24, 94, 289
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 63
NdeII GATC 2 cut(s) 20, 248
NlaIII CATG 2 cut(s) 31, 172
NspI RCATGY 1 cut(s) 31
PaeI GCATGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 88, 260
PinAI ACCGGT 1 cut(s) 288
PkrI GCNGC 3 cut(s) 6, 65, 157
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 3 cut(s) 5, 64, 156
Sau3AI GATC 2 cut(s) 20, 248
SetI ASST 2 cut(s) 129, 270
SphI GCATGC 1 cut(s) 31
Sse9I AATT 1 cut(s) 274
SsiI CCGC 5 cut(s) 4, 55, 153, 156, 182
TasI AATT 1 cut(s) 274
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 7, 158
TfiI GAWTC 2 cut(s) 88, 260
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 1 cut(s) 63
XceI RCATGY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.