Rh3DG349600

Pleckstrin homology domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0019738
Physical Location & Seq
Forward (+)
40035832 .. 40036125
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG349600.1

Sequence Viewer

Length: 294 bp
ATGCGGCCTGATATTCAACGATCCAGCATGCGCCGTCTCTTGCTCCTCCACCGCCGCTACTGCTGCTTTTCTCTGCTTTATCTTCCGAATCTCCGGCTTCTTTCACTCCACACCATCTCCAGCAACCTCTTCCTCATCCCCTTCACCACCACCGCCGCTGGTTCGTCCATGTACTTAATCGTGGATACTGAGAAGGAGAATGAGGAGTGGATAAACTCCATCAGACGCTCGTTAGTCCAGTACTCCAGATCCCTCACCGATTCCGAGGTCGTCGATTACGATAACTACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

97

Amino Acids

11.51

Weight (kDa)

8.71

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019738)

Species Orthologous Gene IDs
malus_domestica MD10G1151000.v1.1
rosa_chinensis RchiOBHm_Chr6g0311721
rosa_multiflora Rmu_sc0000548.1_g000017 Rmu_sc0001836.1_g000013 Rmu_sc0003502.1_g000002 Rmu_sc0018663.1_g000001
rosa_samantha Rh3DG349600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 4, 52, 55, 153, 156
AclWI GGATC 2 cut(s) 15, 243
AfaI GTAC 2 cut(s) 173, 242
AgeI ACCGGT 1 cut(s) 288
AgsI TTSAA 1 cut(s) 17
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 2 cut(s) 15, 243
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 63
AsiGI ACCGGT 1 cut(s) 288
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 136, 247
BbvI GCAGC 1 cut(s) 50
BccI CCATC 2 cut(s) 122, 227
BceAI ACGGC 1 cut(s) 18
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 41
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 4 cut(s) 5, 55, 64, 156
BlsI GCNGC 4 cut(s) 6, 56, 65, 157
BmcAI AGTACT 1 cut(s) 242
BpmI CTGGAG 2 cut(s) 103, 229
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse118I RCCGGY 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 2 cut(s) 35, 218
BseXI GCAGC 1 cut(s) 50
BshFI GGCC 1 cut(s) 7
BshTI ACCGGT 1 cut(s) 288
BsiSI CCGG 2 cut(s) 94, 289
BsmAI GTCTC 1 cut(s) 41
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 2 cut(s) 20, 248
BspACI CCGC 5 cut(s) 4, 52, 55, 153, 156
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 181
BspPI GGATC 2 cut(s) 15, 243
BsrFI RCCGGY 1 cut(s) 288
BsrI ACTGG 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 2 cut(s) 20, 248
Bst6I CTCTTC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 23, 251
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 20, 248
BstMWI GCNNNNNNNGC 2 cut(s) 60, 63
BstNSI RCATGY 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 7
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 288
CseI GACGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 172, 241
CspAI ACCGGT 1 cut(s) 288
CviAII CATG 2 cut(s) 28, 169
CviJI RGCY 2 cut(s) 7, 97
CviKI_1 RGCY 2 cut(s) 7, 97
CviQI GTAC 2 cut(s) 172, 241
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 22, 250
DpnII GATC 2 cut(s) 20, 248
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 2 cut(s) 31, 172
FaiI YATR 2 cut(s) 29, 170
FatI CATG 2 cut(s) 27, 168
Fnu4HI GCNGC 4 cut(s) 5, 55, 64, 156
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 5, 55, 64, 156
GlaI GCGC 1 cut(s) 32
GluI GCNGC 4 cut(s) 5, 55, 64, 156
GsuI CTGGAG 2 cut(s) 103, 229
HaeIII GGCC 1 cut(s) 7
HapII CCGG 2 cut(s) 94, 289
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 33
Hin1II CATG 2 cut(s) 31, 172
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 2 cut(s) 88, 260
HpaII CCGG 2 cut(s) 94, 289
HphI GGTGA 2 cut(s) 136, 247
Hpy188I TCNGA 3 cut(s) 87, 224, 265
Hpy188III TCNNGA 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 151, 187
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 63
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 2 cut(s) 31, 172
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 20, 248
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 7 cut(s) 21, 37, 107, 133, 144, 251, 259
Lsp1109I GCAGC 1 cut(s) 50
MalI GATC 2 cut(s) 22, 250
MboI GATC 2 cut(s) 20, 248
MboII GAAGA 2 cut(s) 74, 121
MflI RGATCY 1 cut(s) 248
MnlI CCTC 6 cut(s) 56, 137, 143, 196, 259, 263
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 2 cut(s) 94, 289
MwoI GCNNNNNNNGC 2 cut(s) 60, 63
NdeII GATC 2 cut(s) 20, 248
NlaIII CATG 2 cut(s) 31, 172
NspI RCATGY 1 cut(s) 31
PaeI GCATGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 88, 260
PinAI ACCGGT 1 cut(s) 288
PkrI GCNGC 4 cut(s) 6, 56, 65, 157
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 2 cut(s) 173, 242
RsaNI GTAC 2 cut(s) 172, 241
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 4 cut(s) 5, 55, 64, 156
Sau3AI GATC 2 cut(s) 20, 248
ScaI AGTACT 1 cut(s) 242
SetI ASST 2 cut(s) 129, 270
SphI GCATGC 1 cut(s) 31
SsiI CCGC 5 cut(s) 4, 52, 55, 153, 156
TaqI TCGA 1 cut(s) 273
TatI WGTACW 2 cut(s) 171, 240
TauI GCSGC 3 cut(s) 7, 57, 158
TfiI GAWTC 2 cut(s) 88, 260
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 1 cut(s) 63
XceI RCATGY 1 cut(s) 31
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.