Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003502.1

Orthogroup ID

OG0019738

Physical Location & Seq

Genomic Coordinates Reverse (-)

3795 .. 4061

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003502.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgcgccgtctcttgctcctccaccgccgctactgctgcttttctctgctttatcttccgaatctccggcttctttcactccacaccatctccagcaacctcttcctcatccccttcaccaccatcgccgctggttcgtccatgtacttaatcgtggatactgagaaggagaatgaggagtggataaactccatcagacgctcgttagtccagcactccagatccctcaccgattccgaggtcgtcgattacgataactaccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

88

Amino Acids

10.42

Weight (kDa)

7.84

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019738)

Species	Orthologous Gene IDs
malus_domestica	MD10G1151000.v1.1
rosa_chinensis	RchiOBHm_Chr6g0311721
rosa_multiflora	Rmu_sc0000548.1_g000017 Rmu_sc0001836.1_g000013 Rmu_sc0003502.1_g000002 Rmu_sc0018663.1_g000001
rosa_samantha	Rh3DG349600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	25, 28, 129
AclWI	GGATC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	146
AgeI	ACCGGT	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	36
AsiGI	ACCGGT	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	6
AsuHPI	GGTGA	2 cut(s)	109, 220
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	3 cut(s)	95, 131, 200
BciVI	GTATCC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	151
BisI	GCNGC	3 cut(s)	28, 37, 129
BlsI	GCNGC	3 cut(s)	29, 38, 130
BpmI	CTGGAG	2 cut(s)	76, 202
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	261
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	153
BseRI	GAGGAG	2 cut(s)	8, 191
BseXI	GCAGC	1 cut(s)	23
BshTI	ACCGGT	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	67, 262
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	3 cut(s)	25, 28, 129
BspCNI	CTCAG	1 cut(s)	154
BspPI	GGATC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 36
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BsuI	GTATCC	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	261
CseI	GACGC	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	145
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	1 cut(s)	70
CviKI_1	RGCY	1 cut(s)	70
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	1 cut(s)	145
FaiI	YATR	1 cut(s)	143
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	28, 37, 129
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	3 cut(s)	28, 37, 129
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	3 cut(s)	28, 37, 129
GsuI	CTGGAG	2 cut(s)	76, 202
HapII	CCGG	2 cut(s)	67, 262
HgaI	GACGC	1 cut(s)	207
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	145
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	2 cut(s)	61, 233
HpaII	CCGG	2 cut(s)	67, 262
HphI	GGTGA	2 cut(s)	109, 220
Hpy188I	TCNGA	3 cut(s)	60, 197, 238
Hpy188III	TCNNGA	1 cut(s)	219
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	124, 160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 36
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	145
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	221
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	5 cut(s)	80, 106, 117, 224, 232
Lsp1109I	GCAGC	1 cut(s)	23
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	2 cut(s)	47, 94
MflI	RGATCY	1 cut(s)	221
MnlI	CCTC	6 cut(s)	29, 110, 116, 169, 232, 236
MseI	TTAA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	2 cut(s)	67, 262
MwoI	GCNNNNNNNGC	2 cut(s)	33, 36
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	61, 233
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	3 cut(s)	29, 38, 130
PsuI	RGATCY	1 cut(s)	221
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	3 cut(s)	28, 37, 129
Sau3AI	GATC	1 cut(s)	221
SetI	ASST	2 cut(s)	102, 243
SsiI	CCGC	3 cut(s)	25, 28, 129
TaqI	TCGA	1 cut(s)	246
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	2 cut(s)	30, 131
TfiI	GAWTC	2 cut(s)	61, 233
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TseI	GCWGC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.