Rmu_sc0018663.1_g000001

Pleckstrin homology domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018663.1
OG0019738
Physical Location & Seq
Reverse (-)
1 .. 817
817 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018663.1_g000001.1.cds

Sequence Viewer

Length: 364 bp
atgcggcctgatattcaacgatccagcatgcgccgtctcttgctcctccaccgccgctactgctgcttttctctgctttatcttccgaatctccagcttctttcactccacaccatctccagcaacctcttcctcatccccttcaccaccatcgccgctggttcgtccatgtacttaatcgcggatactgagaaggagaatgaggagtggataaactccatcagacgctcgttagtccagcactccagatccctcaccgattccgaggtcgtcgattacgataactatcgaagaccagagggggaggaagagaaggctgaagtgcagagacatggtggaaccgtggaagaagaagaaggaagag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PH

Protein Analysis

121

Amino Acids

14.16

Weight (kDa)

5.57

Isoelectric Point (pI)

72.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019738)

Species Orthologous Gene IDs
malus_domestica MD10G1151000.v1.1
rosa_chinensis RchiOBHm_Chr6g0311721
rosa_multiflora Rmu_sc0000548.1_g000017 Rmu_sc0001836.1_g000013 Rmu_sc0003502.1_g000002 Rmu_sc0018663.1_g000001
rosa_samantha Rh3DG349600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 5 cut(s) 4, 52, 55, 156, 182
AclWI GGATC 2 cut(s) 15, 243
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 41, 322
AlwI GGATC 2 cut(s) 15, 243
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 2 cut(s) 136, 247
BbsI GAAGAC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 50
BccI CCATC 3 cut(s) 122, 158, 227
BceAI ACGGC 1 cut(s) 18
BciVI GTATCC 1 cut(s) 178
BcoDI GTCTC 2 cut(s) 41, 322
BfuI GTATCC 1 cut(s) 178
BisI GCNGC 4 cut(s) 5, 55, 64, 156
BlsI GCNGC 4 cut(s) 6, 56, 65, 157
BmiI GGNNCC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 298
BpmI CTGGAG 3 cut(s) 77, 103, 229
BsaBI GATNNNNATC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 264, 342
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bse8I GATNNNNATC 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 264, 342
BseGI GGATG 1 cut(s) 135
BseJI GATNNNNATC 1 cut(s) 285
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 2 cut(s) 35, 218
BseXI GCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 1 cut(s) 7
BsmAI GTCTC 2 cut(s) 41, 322
BsmBI CGTCTC 1 cut(s) 41
BsnI GGCC 1 cut(s) 7
Bsp143I GATC 2 cut(s) 20, 248
BspACI CCGC 5 cut(s) 4, 52, 55, 156, 182
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 2 cut(s) 15, 243
BssECI CCNNGG 2 cut(s) 264, 342
BssMI GATC 2 cut(s) 20, 248
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 3 cut(s) 134, 303, 355
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 135
BstFNI CGCG 1 cut(s) 182
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 2 cut(s) 23, 251
BstMAI GTCTC 2 cut(s) 41, 322
BstMBI GATC 2 cut(s) 20, 248
BstMWI GCNNNNNNNGC 2 cut(s) 60, 63
BstNSI RCATGY 1 cut(s) 31
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 1 cut(s) 50
BstV2I GAAGAC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuI GTATCC 1 cut(s) 178
BsuRI GGCC 1 cut(s) 7
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 1 cut(s) 33
CseI GACGC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 172
CviAII CATG 3 cut(s) 28, 169, 332
CviJI RGCY 3 cut(s) 7, 97, 317
CviKI_1 RGCY 3 cut(s) 7, 97, 317
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 22, 250
DpnII GATC 2 cut(s) 20, 248
Eam1104I CTCTTC 3 cut(s) 134, 303, 355
EarI CTCTTC 3 cut(s) 134, 303, 355
Eco57I CTGAAG 1 cut(s) 339
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 3 cut(s) 31, 172, 335
FaiI YATR 3 cut(s) 29, 170, 333
FatI CATG 3 cut(s) 27, 168, 331
Fnu4HI GCNGC 4 cut(s) 5, 55, 64, 156
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 4 cut(s) 5, 55, 64, 156
GlaI GCGC 1 cut(s) 32
GluI GCNGC 4 cut(s) 5, 55, 64, 156
GsuI CTGGAG 3 cut(s) 77, 103, 229
HaeIII GGCC 1 cut(s) 7
HgaI GACGC 1 cut(s) 234
HhaI GCGC 1 cut(s) 33
Hin1II CATG 3 cut(s) 31, 172, 335
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 2 cut(s) 88, 260
HphI GGTGA 2 cut(s) 136, 247
Hpy188I TCNGA 3 cut(s) 87, 224, 265
Hpy188III TCNNGA 1 cut(s) 246
Hpy99I CGWCG 1 cut(s) 275
HpyAV CCTTC 4 cut(s) 151, 187, 307, 350
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 63
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 3 cut(s) 31, 172, 335
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 2 cut(s) 20, 248
LmnI GCTCC 1 cut(s) 48
LpnPI CCDG 8 cut(s) 21, 37, 107, 133, 144, 251, 259, 309
Lsp1109I GCAGC 1 cut(s) 50
MalI GATC 2 cut(s) 22, 250
MboI GATC 2 cut(s) 20, 248
MboII GAAGA 6 cut(s) 74, 121, 303, 320, 359, 362
MflI RGATCY 1 cut(s) 248
MnlI CCTC 8 cut(s) 56, 137, 143, 196, 259, 263, 292, 298
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 158
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 60, 63
NdeII GATC 2 cut(s) 20, 248
NlaIII CATG 3 cut(s) 31, 172, 335
NlaIV GGNNCC 1 cut(s) 340
NspI RCATGY 1 cut(s) 31
PaeI GCATGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 2 cut(s) 88, 260
PkrI GCNGC 4 cut(s) 6, 56, 65, 157
PspN4I GGNNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 4 cut(s) 5, 55, 64, 156
Sau3AI GATC 2 cut(s) 20, 248
SetI ASST 3 cut(s) 99, 129, 270
SphI GCATGC 1 cut(s) 31
SsiI CCGC 5 cut(s) 4, 52, 55, 156, 182
TaaI ACNGT 1 cut(s) 343
TaqI TCGA 2 cut(s) 273, 289
TatI WGTACW 1 cut(s) 171
TauI GCSGC 3 cut(s) 7, 57, 158
TfiI GAWTC 2 cut(s) 88, 260
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 1 cut(s) 63
XceI RCATGY 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.