RchiOBHm_Chr7g0184961

Belongs to the peptidase S1C family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019034
Physical Location & Seq
Forward (+)
5254174 .. 5265032
10859 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16503

Sequence Viewer

Length: 747 bp
ATGGCCACCACTTTCGCGAGAGCACAAGATGTCCCTCCATTCTCTCCCCTTTTAGAAACAGAGAAACCACCCTTCTTCAAAAAGATGAGAAATTCAGTTGTCGTTACTTTTCAAGTTATTTCAAAAAAGAGGGTTGGTGTTGGTAGTCGGGCTCGGGCTGGTGAGGATGAAAATGACATCCGATATGGGTCAGGTTTTGTGTTTAGTAGTGAAGGTCATATTTTGACTTGGGGGGATAACATCAAAGGAAACAAGAGCTCAAAGATACAGGTTCAATTTTTTCAGCAAAATGAACCGATAGATGCCAGTGTTGTTTATAGCCATCCAACAAAAAATGTGGCTATTTTGAAGCCAAAAGATTGTCTCCACCGGCCGGTTGCTTACGCTGAATTAGCTGATAATGAAGCTGAAGTTGGTATGGAAGTGTATTGCATAGGACACCCTCTTGGGCTGACCTACAATATGCTTATAGGTCAAGTGGGTTTTCCTGGTGCTAGGCAGTATGGCGAGTTTGTGGAATTAGATAATAACAGAATTTTGAGGGGCAAAGCAGGATTGGATGACAAGCTGGCCCTAATTCAATTGAATAACATTCATGGCAGTGATGCTATAGAAGGGGCACCAGTTTTCGATGCAAGTGGGAGAGTCCTTGGAATGCTAGCTTTTTGTCTTACGCTGTTCGACTTTGCTATTCATCACAAGGAATTAAAGGCAGTCATTGGAGAATTCAAAGGCAACAAAGGATGA

Protein Analysis

248

Amino Acids

27.27

Weight (kDa)

7.06

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trypsin_2 PF13365 63 - 219 5.4e-14 Trypsin-like peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019034)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184961
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7BG260500 Rh7CG071200 Rh7CG071300 Rh7DG070700 Rh7DG273300
rosa_wichuraiana Rw7G005820 Rw7G005830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 619
AccII CGCG 1 cut(s) 17
AcoI YGGCCR 2 cut(s) 3, 371
AcsI RAATTY 3 cut(s) 91, 534, 725
AcuI CTGAAG 1 cut(s) 429
AfiI CCNNNNNNNGG 1 cut(s) 373
AgsI TTSAA 8 cut(s) 79, 113, 123, 275, 349, 581, 586, 730
AjnI CCWGG 1 cut(s) 487
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AluBI AGCT 5 cut(s) 258, 395, 407, 568, 662
AluI AGCT 5 cut(s) 258, 395, 407, 568, 662
Alw21I GWGCWC 2 cut(s) 25, 260
Alw26I GTCTC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 3 cut(s) 3, 371, 570
ApoI RAATTY 3 cut(s) 91, 534, 725
AspS9I GGNCC 1 cut(s) 571
AsuHPI GGTGA 1 cut(s) 173
AsuNHI GCTAGC 1 cut(s) 658
AvaI CYCGRG 1 cut(s) 153
BaeGI GKGCMC 1 cut(s) 622
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 619
BanII GRGCYC 2 cut(s) 154, 260
Bbv12I GWGCWC 2 cut(s) 25, 260
BccI CCATC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 489
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 495, 659
BfmI CTRYAG 1 cut(s) 609
Bme1390I CCNGG 1 cut(s) 489
BmeT110I CYCGRG 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 1 cut(s) 489
BmsI GCATC 3 cut(s) 292, 595, 622
BmtI GCTAGC 1 cut(s) 662
BsaJI CCNNGG 1 cut(s) 649
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 2 cut(s) 369, 373
Bse1I ACTGG 2 cut(s) 306, 623
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 4 cut(s) 172, 177, 322, 565
BseLI CCNNNNNNNGG 1 cut(s) 373
BseNI ACTGG 2 cut(s) 306, 623
BseSI GKGCMC 1 cut(s) 622
BseX3I CGGCCG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 3 cut(s) 5, 373, 572
BshNI GGYRCC 1 cut(s) 619
BsiEI CGRYCG 1 cut(s) 374
BsiHKAI GWGCWC 2 cut(s) 25, 260
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 370, 374
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 368
BsmFI GGGAC 1 cut(s) 17
BsmI GAATGC 1 cut(s) 660
BsnI GGCC 3 cut(s) 5, 373, 572
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 4 cut(s) 25, 154, 260, 622
Bsp68I TCGCGA 1 cut(s) 17
BspANI GGCC 3 cut(s) 5, 373, 572
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 1 cut(s) 621
BspOI GCTAGC 1 cut(s) 662
BspT107I GGYRCC 1 cut(s) 619
BsrFI RCCGGY 2 cut(s) 369, 373
BsrI ACTGG 2 cut(s) 306, 623
BssAI RCCGGY 2 cut(s) 369, 373
BssECI CCNNGG 1 cut(s) 649
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 1 cut(s) 489
BstC8I GCNNGC 2 cut(s) 570, 660
BstF5I GGATG 4 cut(s) 172, 177, 322, 565
BstFNI CGCG 1 cut(s) 17
BstMAI GTCTC 1 cut(s) 368
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 1 cut(s) 392
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 487
BstSFI CTRYAG 1 cut(s) 609
BstSLI GKGCMC 1 cut(s) 622
BstUI CGCG 1 cut(s) 17
BstZI CGGCCG 1 cut(s) 371
BsuRI GGCC 3 cut(s) 5, 373, 572
BtsCI GGATG 4 cut(s) 172, 177, 322, 565
BtsI GCAGTG 1 cut(s) 607
BtsIMutI CAGTG 2 cut(s) 313, 607
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 570, 660
Cfr10I RCCGGY 2 cut(s) 369, 373
Cfr13I GGNCC 1 cut(s) 571
CspCI CAANNNNNGTGG 2 cut(s) 318, 353
CviAII CATG 1 cut(s) 596
EaeI YGGCCR 2 cut(s) 3, 371
EagI CGGCCG 1 cut(s) 371
Ecl136II GAGCTC 1 cut(s) 258
EclXI CGGCCG 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 649
Eco24I GRGCYC 2 cut(s) 154, 260
Eco52I CGGCCG 1 cut(s) 371
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 258
EcoRI GAATTC 1 cut(s) 725
EcoRII CCWGG 1 cut(s) 487
EcoT14I CCWWGG 1 cut(s) 649
EcoT38I GRGCYC 2 cut(s) 154, 260
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 1 cut(s) 599
FaqI GGGAC 1 cut(s) 17
FatI CATG 1 cut(s) 595
FokI GGATG 4 cut(s) 164, 179, 309, 572
FriOI GRGCYC 2 cut(s) 154, 260
FspBI CTAG 2 cut(s) 495, 659
HaeIII GGCC 3 cut(s) 5, 373, 572
HapII CCGG 2 cut(s) 370, 374
Hin1II CATG 1 cut(s) 599
HinfI GANTC 1 cut(s) 645
HpaII CCGG 2 cut(s) 370, 374
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 3 cut(s) 82, 206, 608
HpyCH4V TGCA 2 cut(s) 432, 635
HpyF10VI GCNNNNNNNGC 1 cut(s) 392
Hsp92II CATG 1 cut(s) 599
LweI GCATC 3 cut(s) 292, 595, 622
MaeI CTAG 2 cut(s) 495, 659
MaeIII GTNAC 1 cut(s) 103
MboII GAAGA 1 cut(s) 67
MfeI CAATTG 1 cut(s) 581
MhlI GDGCHC 4 cut(s) 25, 154, 260, 622
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 91, 275, 389, 518, 534, 576, 581, 704, 725
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 654
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 5 cut(s) 45, 123, 157, 453, 534
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 707
MslI CAYNNNNRTG 1 cut(s) 600
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 370, 374
MspR9I CCNGG 1 cut(s) 489
MunI CAATTG 1 cut(s) 581
Mva1269I GAATGC 1 cut(s) 660
MvaI CCWGG 1 cut(s) 489
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 392
NheI GCTAGC 1 cut(s) 658
NlaIII CATG 1 cut(s) 599
NlaIV GGNNCC 1 cut(s) 621
NruI TCGCGA 1 cut(s) 17
PctI GAATGC 1 cut(s) 660
PleI GAGTC 1 cut(s) 653
PpsI GAGTC 1 cut(s) 653
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 1 cut(s) 571
RruI TCGCGA 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 707
Sau96I GGNCC 1 cut(s) 571
SchI GAGTC 1 cut(s) 654
ScrFI CCNGG 1 cut(s) 489
SduI GDGCHC 4 cut(s) 25, 154, 260, 622
SfaNI GCATC 3 cut(s) 292, 595, 622
SfcI CTRYAG 1 cut(s) 609
SmiMI CAYNNNNRTG 1 cut(s) 600
Sse9I AATT 9 cut(s) 91, 275, 389, 518, 534, 576, 581, 704, 725
SspMI CTAG 2 cut(s) 495, 659
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 1 cut(s) 487
StyI CCWWGG 1 cut(s) 649
TaqI TCGA 2 cut(s) 630, 681
TasI AATT 9 cut(s) 91, 275, 389, 518, 534, 576, 581, 704, 725
Tru1I TTAA 1 cut(s) 707
Tru9I TTAA 1 cut(s) 707
TscAI CASTG 2 cut(s) 313, 607
TspDTI ATGAA 5 cut(s) 183, 306, 417, 584, 683
TspRI CASTG 2 cut(s) 313, 607
XapI RAATTY 3 cut(s) 91, 534, 725
XspI CTAG 2 cut(s) 495, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.