Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0019034

Physical Location & Seq

Genomic Coordinates Forward (+)

4887259 .. 4889156

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAGTGGCTGTGGGACTAGTAAAGCTGAAGATTTGGGTGATAGGTGTGAGATGGCCACCACTTTTGCGAGAGCACAAGATGTCCCTCCATTCTCTCCCCTTTTAGAAACAGAGAAACCACCCTTCTTGAAAAAGATGAGAAATTCAGTTGTCGTTACTTTTCAAGTTATTTCAAAAAAGAGGGTTGGTGTTGGTAGTCGGGCTCGGGCTGGTGAGGATGAAAATGACATCCGATATGGGTCAGGTTTTGTGTTTAGTAGTGAAGGTCATATTTTGACTTGGGGGGATAACATTAAAGGAAACAAGAGCTCAAAGATACAGGTTCAATTTTTTCAGCAAAATGAACCGATAGATGCCATTGTTGTTTATAGTCATCCAACAAAAAATGTGGCTATTTTGAAGCCAAAAGATTGTCTCCACCGGCCGGTTGCTTACGCTGAATTAGCTGATAATGAAGCTGAAGTTGGTATGGAAGTGTATTGCATAGGACACCCTCTTGGGCTGACCTACAATATGCTTATAGGTCAAGTTGGTTTTCCTGGTGCTAGGCAGTATGGCGAGTTTGTGGAATTAGATAATAACAGAATTTTGAGGGGCAAAGCAGGATTGGATGACAAGCTGGCCCTAATTCAATTGAATAACATTCATGGCAGTGATGCTATAGAAGGGGCACCAGTTTTCGATGCAAGTGGGAGAGTCCTTGGAATGCTAGCTTTTTGTCTTACGCTGTTCGACTTTGCTATTCATCACAAGGAATTAAAGGCAGTCTTCCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006091 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009056 GO:0009057 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009765 GO:0009987 GO:0010033 GO:0010206 GO:0015979 GO:0016020 GO:0016787 GO:0017171 GO:0019538 GO:0019684 GO:0030091 GO:0030163 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0042221 GO:0042651 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0055035 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDZ_2 Trypsin_2

Protein Analysis

259

Amino Acids

28.48

Weight (kDa)

6.17

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trypsin_2	PF13365	80 - 236	1.1e-13	Trypsin-like peptidase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0019034)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0184961
rosa_rugosa	Rorug07G0133400
rosa_samantha	Rh7BG260500 Rh7CG071200 Rh7CG071300 Rh7DG070700 Rh7DG273300
rosa_wichuraiana	Rw7G005820 Rw7G005830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	670
AcoI	YGGCCR	2 cut(s)	54, 422
AcsI	RAATTY	2 cut(s)	142, 585
AcuI	CTGAAG	2 cut(s)	48, 480
AfiI	CCNNNNNNNGG	1 cut(s)	424
AgsI	TTSAA	7 cut(s)	130, 164, 174, 326, 400, 632, 637
AhlI	ACTAGT	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	538
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AluBI	AGCT	6 cut(s)	26, 309, 446, 458, 619, 713
AluI	AGCT	6 cut(s)	26, 309, 446, 458, 619, 713
Alw21I	GWGCWC	2 cut(s)	76, 311
Alw26I	GTCTC	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	204
AoxI	GGCC	3 cut(s)	54, 422, 621
ApoI	RAATTY	2 cut(s)	142, 585
AspS9I	GGNCC	1 cut(s)	622
AsuHPI	GGTGA	2 cut(s)	50, 224
AsuNHI	GCTAGC	1 cut(s)	709
AvaI	CYCGRG	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	673
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	670
BanII	GRGCYC	2 cut(s)	205, 311
BbsI	GAAGAC	1 cut(s)	760
Bbv12I	GWGCWC	2 cut(s)	76, 311
BccI	CCATC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	419
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	4 cut(s)	18, 546, 710, 778
BfmI	CTRYAG	1 cut(s)	660
Bme1390I	CCNGG	1 cut(s)	540
BmeT110I	CYCGRG	1 cut(s)	204
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	343, 646, 673
BmtI	GCTAGC	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	760
BsaJI	CCNNGG	1 cut(s)	700
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	2 cut(s)	420, 424
Bse1I	ACTGG	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	700
BseGI	GGATG	4 cut(s)	223, 228, 373, 616
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	674
BseSI	GKGCMC	1 cut(s)	673
BseX3I	CGGCCG	1 cut(s)	422
Bsh1285I	CGRYCG	1 cut(s)	425
BshFI	GGCC	3 cut(s)	56, 424, 623
BshNI	GGYRCC	1 cut(s)	670
BsiEI	CGRYCG	1 cut(s)	425
BsiHKAI	GWGCWC	2 cut(s)	76, 311
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	421, 425
BslFI	GGGAC	2 cut(s)	28, 68
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	1 cut(s)	419
BsmFI	GGGAC	2 cut(s)	28, 68
BsmI	GAATGC	1 cut(s)	711
BsnI	GGCC	3 cut(s)	56, 424, 623
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	4 cut(s)	76, 205, 311, 673
BspANI	GGCC	3 cut(s)	56, 424, 623
BspLI	GGNNCC	1 cut(s)	672
BspOI	GCTAGC	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	670
BsrFI	RCCGGY	2 cut(s)	420, 424
BsrI	ACTGG	1 cut(s)	674
BssAI	RCCGGY	2 cut(s)	420, 424
BssECI	CCNNGG	1 cut(s)	700
BssT1I	CCWWGG	1 cut(s)	700
Bst2UI	CCWGG	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	621, 711
BstF5I	GGATG	4 cut(s)	223, 228, 373, 616
BstMAI	GTCTC	1 cut(s)	419
BstMCI	CGRYCG	1 cut(s)	425
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	1 cut(s)	673
BstV2I	GAAGAC	1 cut(s)	760
BstZI	CGGCCG	1 cut(s)	422
BsuRI	GGCC	3 cut(s)	56, 424, 623
BtsCI	GGATG	4 cut(s)	223, 228, 373, 616
BtsI	GCAGTG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	658
Cac8I	GCNNGC	2 cut(s)	621, 711
Cfr10I	RCCGGY	2 cut(s)	420, 424
Cfr13I	GGNCC	1 cut(s)	622
CspCI	CAANNNNNGTGG	6 cut(s)	46, 81, 108, 143, 369, 404
CviAII	CATG	1 cut(s)	647
EaeI	YGGCCR	2 cut(s)	54, 422
EagI	CGGCCG	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	309
EclXI	CGGCCG	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	700
Eco24I	GRGCYC	2 cut(s)	205, 311
Eco52I	CGGCCG	1 cut(s)	422
Eco53kI	GAGCTC	1 cut(s)	309
Eco57I	CTGAAG	2 cut(s)	48, 480
Eco88I	CYCGRG	1 cut(s)	204
EcoICRI	GAGCTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	1 cut(s)	700
EcoT38I	GRGCYC	2 cut(s)	205, 311
ErhI	CCWWGG	1 cut(s)	700
FaeI	CATG	1 cut(s)	650
FalI	AAGNNNNNCTT	1 cut(s)	752
FaqI	GGGAC	2 cut(s)	28, 68
FatI	CATG	1 cut(s)	646
FokI	GGATG	4 cut(s)	215, 230, 360, 623
FriOI	GRGCYC	2 cut(s)	205, 311
FspBI	CTAG	4 cut(s)	18, 546, 710, 778
HaeIII	GGCC	3 cut(s)	56, 424, 623
HapII	CCGG	2 cut(s)	421, 425
Hin1II	CATG	1 cut(s)	650
HinfI	GANTC	1 cut(s)	696
HpaII	CCGG	2 cut(s)	421, 425
HphI	GGTGA	2 cut(s)	50, 224
Hpy188I	TCNGA	1 cut(s)	233
Hpy188III	TCNNGA	1 cut(s)	127
HpyAV	CCTTC	3 cut(s)	133, 257, 659
HpyCH4V	TGCA	2 cut(s)	483, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	650
LweI	GCATC	3 cut(s)	343, 646, 673
MaeI	CTAG	4 cut(s)	18, 546, 710, 778
MaeIII	GTNAC	1 cut(s)	154
MboII	GAAGA	3 cut(s)	41, 760, 766
MfeI	CAATTG	1 cut(s)	632
MhlI	GDGCHC	4 cut(s)	76, 205, 311, 673
MlsI	TGGCCA	1 cut(s)	56
MluCI	AATT	8 cut(s)	142, 326, 440, 569, 585, 627, 632, 755
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	1 cut(s)	705
MmeI	TCCRAC	1 cut(s)	401
MnlI	CCTC	5 cut(s)	96, 174, 208, 504, 585
Mox20I	TGGCCA	1 cut(s)	56
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	2 cut(s)	294, 758
MslI	CAYNNNNRTG	1 cut(s)	651
Msp20I	TGGCCA	1 cut(s)	56
MspI	CCGG	2 cut(s)	421, 425
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	632
Mva1269I	GAATGC	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	443
NheI	GCTAGC	1 cut(s)	709
NlaIII	CATG	1 cut(s)	650
NlaIV	GGNNCC	1 cut(s)	672
PctI	GAATGC	1 cut(s)	711
PleI	GAGTC	1 cut(s)	704
PpsI	GAGTC	1 cut(s)	704
Psp124BI	GAGCTC	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	1 cut(s)	622
RseI	CAYNNNNRTG	1 cut(s)	651
SacI	GAGCTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	294, 758
Sau96I	GGNCC	1 cut(s)	622
SchI	GAGTC	1 cut(s)	705
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	4 cut(s)	76, 205, 311, 673
SfaNI	GCATC	3 cut(s)	343, 646, 673
SfcI	CTRYAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	651
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	8 cut(s)	142, 326, 440, 569, 585, 627, 632, 755
SspMI	CTAG	4 cut(s)	18, 546, 710, 778
SstI	GAGCTC	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	700
TaqI	TCGA	2 cut(s)	681, 732
TasI	AATT	8 cut(s)	142, 326, 440, 569, 585, 627, 632, 755
Tru1I	TTAA	2 cut(s)	294, 758
Tru9I	TTAA	2 cut(s)	294, 758
TscAI	CASTG	1 cut(s)	658
TspDTI	ATGAA	5 cut(s)	234, 357, 468, 635, 734
TspRI	CASTG	1 cut(s)	658
XapI	RAATTY	2 cut(s)	142, 585
XspI	CTAG	4 cut(s)	18, 546, 710, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.