Rh7DG273300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019034
Physical Location & Seq
Forward (+)
29414236 .. 29422396
8161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG273300.1

Sequence Viewer

Length: 723 bp
ATGTCCAAGCTTTCTAGACCCGAACTCAAGCAGAGGTTTGGTGGTAGTGGTCAAACTCAGGCTCAGGCTCGTGAGGCTGCACATGACATCCAACATGGGTTGGGCTTTGTTATAAACAGTGGAGGTCATATTTTGACTTGGGGTGATAACATTAAAGGTAACAAGAGTTCAAGGATACAGGTTCAATTTTTTTGGCAAAAGAAACATGTAGATGTCATTGTTGTTTATAGGCATCCAACAAAAAATGTGGCTATTTTGAAGCCAAAAAGCTGTCTCCACGGGCTTGTTTCTTACATTGAATTAGTTGATAATGAAGCTGAAGTGGCTCTAAACCCCAAAACAGAAGACACCCAAAACCCAATTCAGAAAATAGAGAACAACCCAACCAAATTGGAGGAACATGTGGCGAATTCTGGAGCGGGAGGCGCGAAGGCGGCGATCGAGCTGCTGCTTGAGGTCGTTGAAGAGGCTGCGCCTATCGTCGAAGTTGTGGGAGTTGGGGGGAAGGGAAAGGTTGTCGTGGTGGTCAAATCGGAGGAACATGTCCCAGGCGTGACTGCACTGGGATTGGTTGAGGTTGGAGTCTTGTTCGAAAACGTCGAGCAGTACGTTGATGGAGATGGGTGTAAAGGTGAGGTGCTTGATAGTCGCTGCGGTGGAGGAATAGACAGAGATGGGTGGTGTCCTCGCTGTGGCGGAAGTAGTCGGAGACAAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

25.87

Weight (kDa)

5.94

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019034)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184961
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7BG260500 Rh7CG071200 Rh7CG071300 Rh7DG070700 Rh7DG273300
rosa_wichuraiana Rw7G005820 Rw7G005830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 419
AccII CGCG 1 cut(s) 428
AciI CCGC 4 cut(s) 419, 434, 654, 696
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 339
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 1 cut(s) 692
AflIII ACRYGT 3 cut(s) 205, 400, 541
AgsI TTSAA 5 cut(s) 171, 185, 259, 299, 464
AjnI CCWGG 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 4 cut(s) 10, 270, 317, 445
AluI AGCT 4 cut(s) 10, 270, 317, 445
Alw26I GTCTC 2 cut(s) 278, 703
ApeKI GCWGC 5 cut(s) 77, 445, 448, 470, 651
ApoI RAATTY 1 cut(s) 409
AspLEI GCGC 2 cut(s) 428, 475
AsuHPI GGTGA 2 cut(s) 155, 644
AsuII TTCGAA 1 cut(s) 591
BauI CACGAG 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 64, 432, 435, 457, 638
BccI CCATC 3 cut(s) 608, 614, 668
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 549
BciVI GTATCC 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 278, 703
BfaI CTAG 1 cut(s) 15
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 6 cut(s) 78, 435, 446, 449, 471, 652
BlsI GCNGC 6 cut(s) 79, 436, 447, 450, 472, 653
Bme1390I CCNGG 1 cut(s) 549
BmrFI CCNGG 1 cut(s) 549
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 435
Bpu10I CCTNAGC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 591
BpuEI CTTGAG 2 cut(s) 11, 473
BsaJI CCNNGG 2 cut(s) 277, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 692
Bse1I ACTGG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 277, 547
BseGI GGATG 2 cut(s) 87, 232
BseLI CCNNNNNNNGG 1 cut(s) 692
BseMII CTCAG 2 cut(s) 71, 77
BseNI ACTGG 1 cut(s) 567
BseXI GCAGC 5 cut(s) 64, 432, 435, 457, 638
BsgI GTGCAG 2 cut(s) 63, 543
Bsh1236I CGCG 1 cut(s) 428
Bsh1285I CGRYCG 1 cut(s) 441
BsiEI CGRYCG 1 cut(s) 441
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 692
BsmAI GTCTC 2 cut(s) 278, 703
BsmFI GGGAC 1 cut(s) 530
Bsp119I TTCGAA 1 cut(s) 591
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 4 cut(s) 419, 434, 654, 696
BspCNI CTCAG 2 cut(s) 70, 76
BspFNI CGCG 1 cut(s) 428
BspT104I TTCGAA 1 cut(s) 591
BsrBI CCGCTC 1 cut(s) 419
BsrI ACTGG 1 cut(s) 567
BssECI CCNNGG 2 cut(s) 277, 547
BssMI GATC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 1 cut(s) 119
Bst6I CTCTTC 2 cut(s) 459, 711
BstBI TTCGAA 1 cut(s) 591
BstDEI CTNAG 2 cut(s) 57, 63
BstDSI CCRYGG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 87, 232
BstFNI CGCG 1 cut(s) 428
BstHHI GCGC 2 cut(s) 428, 475
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 2 cut(s) 278, 703
BstMBI GATC 1 cut(s) 438
BstMCI CGRYCG 1 cut(s) 441
BstMWI GCNNNNNNNGC 4 cut(s) 74, 323, 425, 434
BstNI CCWGG 1 cut(s) 549
BstNSI RCATGY 3 cut(s) 209, 404, 545
BstSCI CCNGG 1 cut(s) 547
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 5 cut(s) 64, 432, 435, 457, 638
BstV2I GAAGAC 1 cut(s) 351
BsuI GTATCC 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 277
BtsCI GGATG 2 cut(s) 87, 232
BtsIMutI CAGTG 2 cut(s) 124, 560
CfoI GCGC 2 cut(s) 428, 475
Csp6I GTAC 1 cut(s) 607
CspCI CAANNNNNGTGG 2 cut(s) 228, 263
CviAII CATG 5 cut(s) 83, 95, 206, 401, 542
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 2 cut(s) 57, 63
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eam1104I CTCTTC 2 cut(s) 459, 711
EarI CTCTTC 2 cut(s) 459, 711
EciI GGCGGA 1 cut(s) 711
Eco57I CTGAAG 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 547
FaeI CATG 5 cut(s) 86, 98, 209, 404, 545
FaiI YATR 8 cut(s) 84, 96, 113, 129, 207, 228, 402, 543
FaqI GGGAC 1 cut(s) 530
FatI CATG 5 cut(s) 82, 94, 205, 400, 541
FauI CCCGC 1 cut(s) 412
Fnu4HI GCNGC 6 cut(s) 78, 435, 446, 449, 471, 652
FokI GGATG 2 cut(s) 74, 219
Fsp4HI GCNGC 6 cut(s) 78, 435, 446, 449, 471, 652
FspBI CTAG 1 cut(s) 15
GlaI GCGC 2 cut(s) 427, 474
GluI GCNGC 6 cut(s) 78, 435, 446, 449, 471, 652
GsuI CTGGAG 1 cut(s) 435
HhaI GCGC 2 cut(s) 428, 475
Hin1II CATG 5 cut(s) 86, 98, 209, 404, 545
Hin6I GCGC 2 cut(s) 426, 473
HinP1I GCGC 2 cut(s) 426, 473
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 582
HphI GGTGA 2 cut(s) 155, 644
Hpy188I TCNGA 3 cut(s) 366, 535, 708
Hpy188III TCNNGA 3 cut(s) 15, 71, 414
Hpy99I CGWCG 2 cut(s) 485, 602
HpyAV CCTTC 2 cut(s) 424, 499
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4IV ACGT 2 cut(s) 597, 609
HpyCH4V TGCA 2 cut(s) 80, 560
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 323, 425, 434
HpyF3I CTNAG 2 cut(s) 57, 63
HpySE526I ACGT 2 cut(s) 597, 609
Hsp92II CATG 5 cut(s) 86, 98, 209, 404, 545
HspAI GCGC 2 cut(s) 426, 473
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 7 cut(s) 44, 50, 164, 399, 534, 548, 561
Lsp1109I GCAGC 5 cut(s) 64, 432, 435, 457, 638
LweI GCATC 1 cut(s) 241
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 597, 609
MaeIII GTNAC 2 cut(s) 158, 553
MalI GATC 1 cut(s) 440
MbiI CCGCTC 1 cut(s) 419
MboI GATC 1 cut(s) 438
MboII GAAGA 2 cut(s) 356, 476
MluCI AATT 5 cut(s) 185, 299, 360, 389, 409
MlyI GAGTC 1 cut(s) 591
MmeI TCCRAC 4 cut(s) 115, 260, 559, 686
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 4 cut(s) 74, 323, 425, 434
NdeII GATC 1 cut(s) 438
NlaIII CATG 5 cut(s) 86, 98, 209, 404, 545
NmuCI GTSAC 1 cut(s) 553
NspI RCATGY 3 cut(s) 209, 404, 545
NspV TTCGAA 1 cut(s) 591
PciI ACATGT 3 cut(s) 205, 400, 541
PcsI WCGNNNNNNNCGW 2 cut(s) 597, 606
PkrI GCNGC 6 cut(s) 79, 436, 447, 450, 472, 653
Ple19I CGATCG 1 cut(s) 441
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
PscI ACATGT 3 cut(s) 205, 400, 541
PsiI TTATAA 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PsrI GAACNNNNNNTAC 2 cut(s) 151, 183
PvuI CGATCG 1 cut(s) 441
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 6 cut(s) 78, 435, 446, 449, 471, 652
Sau3AI GATC 1 cut(s) 438
SchI GAGTC 1 cut(s) 591
ScrFI CCNGG 1 cut(s) 549
SfaNI GCATC 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 591
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 26, 452
SmoI CTYRAG 2 cut(s) 26, 452
Sse9I AATT 5 cut(s) 185, 299, 360, 389, 409
SsiI CCGC 4 cut(s) 419, 434, 654, 696
SspMI CTAG 1 cut(s) 15
StyD4I CCNGG 1 cut(s) 547
TaaI ACNGT 1 cut(s) 119
TaiI ACGT 2 cut(s) 600, 612
TaqI TCGA 4 cut(s) 441, 483, 591, 600
TasI AATT 5 cut(s) 185, 299, 360, 389, 409
TauI GCSGC 1 cut(s) 437
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 124, 567
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 5 cut(s) 77, 445, 448, 470, 651
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 1 cut(s) 327
TspRI CASTG 2 cut(s) 124, 567
XapI RAATTY 1 cut(s) 409
XbaI TCTAGA 1 cut(s) 14
XceI RCATGY 3 cut(s) 209, 404, 545
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.