Rw7G005830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0019034
Physical Location & Seq
Forward (+)
4889675 .. 4890955
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005830.1

Sequence Viewer

Length: 414 bp
ATGCAATGTTATTTTGGTTGGAGCATGTGGAGCAAAAATGGCAGGATCTACTACAGTTGCTTTGAAAACAAATTTGCACCTTGGATTCCATTGCTCCCAGGAGATAAAGATGTGATATGCACTTTGCACCACTGCGCTTGCCATTTCCAGCAAGGTAGGGTGTATTGCATAGGACACCCTCTTGGGCTGACCTACAATATGCTTATAGGTCAAGTGGGTTTTCCTGGTGCTAGGCAGTACGGCGAGTTTGTGGAATTAGATAATAACAGAATTTTGAGGGGCAAAGCAGGATTGGATGACAAGCTGGCCCTAATTCAATTGAATAACATTCATGGCAGTGATGCTATAGAAGGGGCACCAGTTTTCGATGCAAGTGGGAGAGTCCTTGAAACTTGGGGGCAAGACCTTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.44

Weight (kDa)

6.49

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019034)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184961
rosa_rugosa Rorug07G0133400
rosa_samantha Rh7BG260500 Rh7CG071200 Rh7CG071300 Rh7DG070700 Rh7DG273300
rosa_wichuraiana Rw7G005820 Rw7G005830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 355
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 71, 270
AfaI GTAC 1 cut(s) 239
AflII CTTAAG 1 cut(s) 407
AgsI TTSAA 4 cut(s) 65, 317, 322, 389
AjnI CCWGG 2 cut(s) 97, 223
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 306
ApoI RAATTY 2 cut(s) 71, 270
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 307
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 2 cut(s) 99, 225
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 2 cut(s) 52, 345
BfrI CTTAAG 1 cut(s) 407
Bme1390I CCNGG 2 cut(s) 99, 225
BmgT120I GGNCC 1 cut(s) 307
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 2 cut(s) 99, 225
BmsI GCATC 2 cut(s) 331, 358
BsaJI CCNNGG 2 cut(s) 80, 97
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 2 cut(s) 11, 89
BseBI CCWGG 2 cut(s) 99, 225
BseDI CCNNGG 2 cut(s) 80, 97
BseGI GGATG 1 cut(s) 301
BseMI GCAATG 2 cut(s) 11, 89
BseNI ACTGG 1 cut(s) 359
BseSI GKGCMC 1 cut(s) 358
BshFI GGCC 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 355
BsnI GGCC 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 308
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 355
BspTI CTTAAG 1 cut(s) 407
BsrDI GCAATG 2 cut(s) 11, 89
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 80, 97
BssMI GATC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 99, 225
Bst4CI ACNGT 1 cut(s) 56
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 139, 306
BstF5I GGATG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 30, 39
BstNI CCWGG 2 cut(s) 99, 225
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 97, 223
BstSFI CTRYAG 2 cut(s) 52, 345
BstSLI GKGCMC 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 301
BtsI GCAGTG 2 cut(s) 130, 343
BtsIMutI CAGTG 2 cut(s) 130, 343
Cac8I GCNNGC 2 cut(s) 139, 306
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 307
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 119, 154
CviAII CATG 2 cut(s) 25, 332
CviJI RGCY 3 cut(s) 187, 304, 308
CviKI_1 RGCY 3 cut(s) 187, 304, 308
CviQI GTAC 1 cut(s) 238
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 97, 223
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 2 cut(s) 28, 335
FaiI YATR 7 cut(s) 26, 118, 170, 200, 206, 333, 347
FatI CATG 2 cut(s) 24, 331
FokI GGATG 1 cut(s) 308
FspBI CTAG 1 cut(s) 231
GlaI GCGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 308
HhaI GCGC 1 cut(s) 137
Hin1II CATG 2 cut(s) 28, 335
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 2 cut(s) 85, 381
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4V TGCA 6 cut(s) 4, 77, 120, 127, 168, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 39
Hsp92II CATG 2 cut(s) 28, 335
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 45
LmnI GCTCC 3 cut(s) 21, 30, 99
LpnPI CCDG 9 cut(s) 28, 84, 111, 161, 210, 237, 273, 290, 372
LweI GCATC 2 cut(s) 331, 358
MaeI CTAG 1 cut(s) 231
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MfeI CAATTG 1 cut(s) 317
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 358
MluCI AATT 5 cut(s) 71, 254, 270, 312, 317
MlyI GAGTC 1 cut(s) 390
MnlI CCTC 2 cut(s) 189, 270
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 336
MspCI CTTAAG 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 99, 225
MunI CAATTG 1 cut(s) 317
MvaI CCWGG 2 cut(s) 99, 225
MwoI GCNNNNNNNGC 2 cut(s) 30, 39
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 28, 335
NlaIV GGNNCC 1 cut(s) 357
NspI RCATGY 1 cut(s) 28
PfeI GAWTC 1 cut(s) 85
PleI GAGTC 1 cut(s) 389
PpsI GAGTC 1 cut(s) 389
Psp6I CCWGG 2 cut(s) 97, 223
PspGI CCWGG 2 cut(s) 97, 223
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 1 cut(s) 307
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 408
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 307
SchI GAGTC 1 cut(s) 390
ScrFI CCNGG 2 cut(s) 99, 225
SduI GDGCHC 1 cut(s) 358
SetI ASST 6 cut(s) 82, 157, 194, 211, 306, 408
SfaNI GCATC 2 cut(s) 331, 358
SfcI CTRYAG 2 cut(s) 52, 345
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
Sse9I AATT 5 cut(s) 71, 254, 270, 312, 317
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 97, 223
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 366
TasI AATT 5 cut(s) 71, 254, 270, 312, 317
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 2 cut(s) 137, 343
TspDTI ATGAA 1 cut(s) 320
TspRI CASTG 2 cut(s) 137, 343
Vha464I CTTAAG 1 cut(s) 407
XapI RAATTY 2 cut(s) 71, 270
XceI RCATGY 1 cut(s) 28
XspI CTAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.