RchiOBHm_Chr7g0188261

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
7877273 .. 7881955
4683 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16811

Sequence Viewer

Length: 1812 bp
ATGCACAGAACCTGTTTGATTTATTGTCTCTGGGAGTCTGAAACTGACATGTCGTTTTTGCAGCTGAAGATCGTGTACACGCCTAGTCCAAGCGGCAACTTCAGTCTGCGAGACTTCCACCACGCCGTGAACGGCTTGCCGGAAAGTTCATTCCAGCCTCAGATGGACGATTCCGATGTGAAGCTTTCCAGTGTTATCAATGATGAAGTATTGTACCACTGGGGAGGTAGAGATATAATGAGGAAAGTGATCGTGATCACCTCCTGCTTGCCTCGAGATGTGGACTTTATCATGCAAAAGACTCTCACGGCTGCGGCGGATAAGTGTGTTTCTGTTGAGTTTCTATTATTTGAGCAAAAATCAGCCCATCTCAGCAATGTAAAAGAGAATATCAAGAGTTTCGTAACTTGCATCTCCGAGCTTGATAATTGCTCATTTCAAACATGTCTCCCAGATCCCAGAGTATTGCATGGCCTGGTAAATCGATGGTTACAGGATTTAAAGGATGACATTGAGGAACCGATGCAAGCTCGTTTCAACTTCAAGCAGAATCTTGTGGGATCTGTGAACCACTTATCATGCAACTTGTACATATCTGTCAACCAGATGGTTGATGGTTTCTATCCCTGTCAGACATGCAGATGTCATGGCATTTCTCTGGAAGACGCTGTTTTAGTTAAAACAGAGGAATCTTATTGTCCAGTCACAGGGCGTAATATCAGAAGATCTGATGTCATAGGAAATTCTGTGAAAGTTGGAGAAAAAACAATCCTGTTGCTACCCTCATTCCAGATCCCTGTTAAGCTCAACCGTGCTTCTTCACCAATTGACTTCAGTGTCATTGAGAGGACTAACTTGGGGTCCCTAAGTGAAGGTGTTGTAATGGGAGCTTCATATGTTGTCATTCCATCAACTTTCCAGGAAATGGAAACTGCTTCAGATGAGATCGATCAGTCAGATGTGAATAATGAGCTTTTCCGAGGGATTAGCAGTGCTCTACATTCAATGGACCAGGGTTTGGTGTGTTCTTCAAATTGTAATATAGAAACTATGAGGGAGACCACTTTGCTCTGCTATTATATTCTCCAACCGTCAGACAACGGGCCAATGCTTCTCAGGCGCATTGCTGGATCAGAGGAACTTTTGCACATTCCTGATCTCAATCAGTTAACTGTTTCATCAGTGAGGAAGGAATTTGAGGATTCCGTTAAAGACTGTTTGTCAAAGATCGACAAAAGAGACTATAACCCAATGCTGCATGAGAGGGGCTTCCATCAGAAATTAAACTTGCTTGTAAAGGAGAGCTTACTGCTGGGGTCACTATCCCCTAATGTGGAAGAGGATATCTATGAATCAAATGCAACCCAACCGAAATTTTCTGAAGTGGTAGGGCAGTCAGATCCAACAATAGATATTGAAGCCATCCGAGAGGAAACCTCAAAGTTGGTGGATCTGACAGCCGAAGAAGATAAAACATCGGCTTGCATTACAGAAGAGTGGGAGCAGCTGGTTGTGAATGATGTCTCCAAGTTACATTCTCCAGTTTGCACTTCCAAACCTAAGCCAGATCAGTCAGTTCAATCACCACCAGATGGTACCCGCCAACTTGATGCAAAGACCTCAAGGATTTTAGAGAGACTTGAGGTGCCAAGACAGTTCCGAAGAGAACCACTTTCACCAAATCTAAGAAGCAAAGGTGTGACGAATTCAAATGTTCAGGTAAAGAAGCCTTTACTCCCTTCCAAGCCTACTGTGACTAATAGCCAACTAATAAAACCGAACTTCCAAAGGCTAAAAAGGAAATTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

603

Amino Acids

68.0

Weight (kDa)

5.47

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 836
Acc65I GGTACC 1 cut(s) 1595
AccB1I GGYRCC 2 cut(s) 1595, 1645
AccB7I CCANNNNNTGG 3 cut(s) 925, 1018, 1592
AciI CCGC 4 cut(s) 93, 314, 317, 1600
AclWI GGATC 6 cut(s) 449, 568, 787, 1138, 1394, 1458
AcsI RAATTY 5 cut(s) 742, 1193, 1373, 1705, 1802
AcuI CTGAAG 5 cut(s) 85, 86, 817, 921, 1401
AdeI CACNNNGTG 1 cut(s) 127
AfaI GTAC 4 cut(s) 77, 215, 590, 1597
AfiI CCNNNNNNNGG 5 cut(s) 707, 925, 1018, 1333, 1592
AflIII ACRYGT 2 cut(s) 48, 443
AgsI TTSAA 9 cut(s) 440, 538, 544, 1005, 1032, 1418, 1580, 1710, 1807
AhdI GACNNNNNGTC 1 cut(s) 1219
AjnI CCWGG 3 cut(s) 474, 918, 1011
AluBI AGCT 9 cut(s) 64, 184, 421, 530, 805, 890, 973, 1305, 1507
AluI AGCT 9 cut(s) 64, 184, 421, 530, 805, 890, 973, 1305, 1507
Alw21I GWGCWC 1 cut(s) 997
Alw26I GTCTC 7 cut(s) 32, 105, 452, 1052, 1233, 1528, 1630
AlwI GGATC 6 cut(s) 449, 568, 787, 1138, 1394, 1458
AlwNI CAGNNNCTG 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 2 cut(s) 472, 1103
ApeKI GCWGC 4 cut(s) 61, 311, 1255, 1504
ApoI RAATTY 5 cut(s) 742, 1193, 1373, 1705, 1802
Asp718I GGTACC 1 cut(s) 1595
AspLEI GCGC 1 cut(s) 1122
AspS9I GGNCC 3 cut(s) 861, 1009, 1103
AsuHPI GGTGA 4 cut(s) 250, 813, 1575, 1668
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 2 cut(s) 861, 1009
BanI GGYRCC 2 cut(s) 1595, 1645
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbsI GAAGAC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 997
BbvI GCAGC 4 cut(s) 73, 298, 1242, 1516
BccI CCATC 9 cut(s) 157, 375, 480, 601, 608, 916, 1281, 1430, 1586
BceAI ACGGC 3 cut(s) 110, 148, 324
BciT130I CCWGG 3 cut(s) 476, 920, 1013
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 7 cut(s) 32, 105, 452, 1052, 1233, 1528, 1630
BfaI CTAG 1 cut(s) 84
BglII AGATCT 1 cut(s) 725
BisI GCNGC 6 cut(s) 62, 94, 312, 315, 1256, 1505
BlsI GCNGC 6 cut(s) 63, 95, 313, 316, 1257, 1506
Bme1390I CCNGG 3 cut(s) 476, 920, 1013
Bme18I GGWCC 2 cut(s) 861, 1009
BmeRI GACNNNNNGTC 1 cut(s) 1219
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 861, 1009, 1103
BmiI GGNNCC 5 cut(s) 519, 862, 863, 1597, 1647
BmrFI CCNGG 3 cut(s) 476, 920, 1013
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 3 cut(s) 420, 513, 1600
BmuI ACTGGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 669
BplI GAGNNNNNCTC 2 cut(s) 1421, 1453
BpmI CTGGAG 1 cut(s) 1524
Bpu10I CCTNAGC 1 cut(s) 1560
BpuEI CTTGAG 2 cut(s) 1606, 1661
Bsa29I ATCGAT 2 cut(s) 484, 948
BsaBI GATNNNNATC 2 cut(s) 254, 1161
BsaI GGTCTC 1 cut(s) 1052
BsaJI CCNNGG 2 cut(s) 979, 1012
Bsc4I CCNNNNNNNGG 5 cut(s) 707, 925, 1018, 1333, 1592
Bse1I ACTGG 4 cut(s) 189, 224, 701, 1541
Bse3DI GCAATG 2 cut(s) 382, 1122
Bse8I GATNNNNATC 2 cut(s) 254, 1161
BseBI CCWGG 3 cut(s) 476, 920, 1013
BseCI ATCGAT 2 cut(s) 484, 948
BseDI CCNNGG 2 cut(s) 979, 1012
BseGI GGATG 2 cut(s) 511, 1422
BseJI GATNNNNATC 2 cut(s) 254, 1161
BseLI CCNNNNNNNGG 5 cut(s) 707, 925, 1018, 1333, 1592
BseMI GCAATG 2 cut(s) 382, 1122
BseMII CTCAG 3 cut(s) 173, 385, 1129
BseNI ACTGG 4 cut(s) 189, 224, 701, 1541
BseXI GCAGC 4 cut(s) 73, 298, 1242, 1516
BseYI CCCAGC 1 cut(s) 1312
BshFI GGCC 2 cut(s) 474, 1105
BshNI GGYRCC 2 cut(s) 1595, 1645
BshVI ATCGAT 2 cut(s) 484, 948
BsiHKAI GWGCWC 1 cut(s) 997
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 1 cut(s) 847
BslI CCNNNNNNNGG 5 cut(s) 707, 925, 1018, 1333, 1592
BsmAI GTCTC 7 cut(s) 32, 105, 452, 1052, 1233, 1528, 1630
BsmFI GGGAC 1 cut(s) 847
BsnI GGCC 2 cut(s) 474, 1105
Bso31I GGTCTC 1 cut(s) 1052
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 997
Bsp1407I TGTACA 2 cut(s) 75, 588
BspACI CCGC 4 cut(s) 93, 314, 317, 1600
BspANI GGCC 2 cut(s) 474, 1105
BspCNI CTCAG 3 cut(s) 172, 384, 1128
BspDI ATCGAT 2 cut(s) 484, 948
BspLI GGNNCC 5 cut(s) 519, 862, 863, 1597, 1647
BspPI GGATC 6 cut(s) 449, 568, 787, 1138, 1394, 1458
BspT107I GGYRCC 2 cut(s) 1595, 1645
BspTNI GGTCTC 1 cut(s) 1052
BsrDI GCAATG 2 cut(s) 382, 1122
BsrGI TGTACA 2 cut(s) 75, 588
BsrI ACTGG 4 cut(s) 189, 224, 701, 1541
BssECI CCNNGG 2 cut(s) 979, 1012
Bst2UI CCWGG 3 cut(s) 476, 920, 1013
Bst4CI ACNGT 6 cut(s) 812, 1092, 1174, 1217, 1656, 1753
Bst6I CTCTTC 3 cut(s) 1332, 1488, 1657
BstAUI TGTACA 2 cut(s) 75, 588
BstC8I GCNNGC 4 cut(s) 137, 269, 528, 1483
BstDEI CTNAG 6 cut(s) 159, 371, 866, 1115, 1560, 1685
BstF5I GGATG 2 cut(s) 511, 1422
BstHHI GCGC 1 cut(s) 1122
BstMAI GTCTC 7 cut(s) 32, 105, 452, 1052, 1233, 1528, 1630
BstMWI GCNNNNNNNGC 1 cut(s) 1117
BstNI CCWGG 3 cut(s) 476, 920, 1013
BstNSI RCATGY 3 cut(s) 52, 447, 639
BstSCI CCNGG 3 cut(s) 474, 918, 1011
BstV1I GCAGC 4 cut(s) 73, 298, 1242, 1516
BstV2I GAAGAC 1 cut(s) 669
BstX2I RGATCY 6 cut(s) 454, 560, 725, 792, 1399, 1450
BstYI RGATCY 6 cut(s) 454, 560, 725, 792, 1399, 1450
Bsu15I ATCGAT 2 cut(s) 484, 948
BsuRI GGCC 2 cut(s) 474, 1105
BsuTUI ATCGAT 2 cut(s) 484, 948
BtsCI GGATG 2 cut(s) 511, 1422
BtsI GCAGTG 1 cut(s) 997
BtsIMutI CAGTG 5 cut(s) 196, 217, 841, 997, 1188
Cac8I GCNNGC 4 cut(s) 137, 269, 528, 1483
CaiI CAGNNNCTG 1 cut(s) 12
CfoI GCGC 1 cut(s) 1122
Cfr13I GGNCC 3 cut(s) 861, 1009, 1103
ClaI ATCGAT 2 cut(s) 484, 948
CseI GACGC 1 cut(s) 674
Csp6I GTAC 4 cut(s) 76, 214, 589, 1596
CspCI CAANNNNNGTGG 2 cut(s) 1428, 1463
CviAII CATG 8 cut(s) 49, 292, 444, 470, 579, 636, 647, 1259
CviQI GTAC 4 cut(s) 76, 214, 589, 1596
DdeI CTNAG 6 cut(s) 159, 371, 866, 1115, 1560, 1685
DraI TTTAAA 1 cut(s) 501
DraIII CACNNNGTG 1 cut(s) 127
DrdI GACNNNNNNGTC 1 cut(s) 836
DriI GACNNNNNGTC 1 cut(s) 1219
DseDI GACNNNNNNGTC 1 cut(s) 836
Eam1104I CTCTTC 3 cut(s) 1332, 1488, 1657
Eam1105I GACNNNNNGTC 1 cut(s) 1219
EarI CTCTTC 3 cut(s) 1332, 1488, 1657
EciI GGCGGA 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 1052
Eco32I GATATC 1 cut(s) 1345
Eco47I GGWCC 2 cut(s) 861, 1009
Eco57I CTGAAG 5 cut(s) 85, 86, 817, 921, 1401
Eco88I CYCGRG 1 cut(s) 273
EcoO109I RGGNCCY 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 1705
EcoRII CCWGG 3 cut(s) 474, 918, 1011
EcoRV GATATC 1 cut(s) 1345
FaeI CATG 8 cut(s) 52, 295, 447, 473, 582, 639, 650, 1262
FalI AAGNNNNNCTT 2 cut(s) 1289, 1321
FaqI GGGAC 1 cut(s) 847
FatI CATG 8 cut(s) 48, 291, 443, 469, 578, 635, 646, 1258
FauI CCCGC 1 cut(s) 1607
FauNDI CATATG 1 cut(s) 895
FbaI TGATCA 1 cut(s) 255
Fnu4HI GCNGC 6 cut(s) 62, 94, 312, 315, 1256, 1505
FokI GGATG 2 cut(s) 518, 1409
Fsp4HI GCNGC 6 cut(s) 62, 94, 312, 315, 1256, 1505
FspBI CTAG 1 cut(s) 84
GlaI GCGC 1 cut(s) 1121
GluI GCNGC 6 cut(s) 62, 94, 312, 315, 1256, 1505
GsaI CCCAGC 1 cut(s) 1316
GsuI CTGGAG 1 cut(s) 1524
HaeIII GGCC 2 cut(s) 474, 1105
HapII CCGG 1 cut(s) 140
HgaI GACGC 1 cut(s) 674
HhaI GCGC 1 cut(s) 1122
Hin1II CATG 8 cut(s) 52, 295, 447, 473, 582, 639, 650, 1262
Hin6I GCGC 1 cut(s) 1120
HinP1I GCGC 1 cut(s) 1120
HincII GTYRAC 2 cut(s) 601, 1170
HindII GTYRAC 2 cut(s) 601, 1170
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 7 cut(s) 35, 170, 301, 550, 689, 1202, 1352
HpaI GTTAAC 1 cut(s) 1170
HpaII CCGG 1 cut(s) 140
HphI GGTGA 4 cut(s) 250, 813, 1575, 1668
Hpy166II GTNNAC 7 cut(s) 76, 78, 130, 283, 568, 601, 1170
Hpy188III TCNNGA 6 cut(s) 253, 275, 394, 659, 790, 1154
Hpy8I GTNNAC 7 cut(s) 76, 78, 130, 283, 568, 601, 1170
HpyAV CCTTC 3 cut(s) 866, 1183, 1749
HpyCH4III ACNGT 6 cut(s) 812, 1092, 1174, 1217, 1656, 1753
HpyF10VI GCNNNNNNNGC 1 cut(s) 1117
HpyF3I CTNAG 6 cut(s) 159, 371, 866, 1115, 1560, 1685
Hsp92II CATG 8 cut(s) 52, 295, 447, 473, 582, 639, 650, 1262
HspAI GCGC 1 cut(s) 1120
KflI GGGWCCC 1 cut(s) 861
KpnI GGTACC 1 cut(s) 1599
Ksp22I TGATCA 1 cut(s) 255
KspAI GTTAAC 1 cut(s) 1170
LmnI GCTCC 2 cut(s) 887, 1501
Lsp1109I GCAGC 4 cut(s) 73, 298, 1242, 1516
LweI GCATC 3 cut(s) 420, 513, 1600
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 7 cut(s) 403, 489, 703, 1317, 1530, 1699, 1753
MfeI CAATTG 1 cut(s) 825
MflI RGATCY 6 cut(s) 454, 560, 725, 792, 1399, 1450
MhlI GDGCHC 1 cut(s) 997
MluCI AATT 9 cut(s) 427, 742, 825, 1033, 1193, 1280, 1373, 1705, 1802
MlyI GAGTC 2 cut(s) 44, 295
MmeI TCCRAC 3 cut(s) 736, 1111, 1427
MseI TTAA 6 cut(s) 500, 678, 801, 1169, 1209, 1283
MslI CAYNNNNRTG 1 cut(s) 640
MspA1I CMGCKG 2 cut(s) 64, 1507
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 3 cut(s) 476, 920, 1013
MunI CAATTG 1 cut(s) 825
MvaI CCWGG 3 cut(s) 476, 920, 1013
MwoI GCNNNNNNNGC 1 cut(s) 1117
NdeI CATATG 1 cut(s) 895
NlaIII CATG 8 cut(s) 52, 295, 447, 473, 582, 639, 650, 1262
NlaIV GGNNCC 5 cut(s) 519, 862, 863, 1597, 1647
NmuCI GTSAC 4 cut(s) 703, 1317, 1699, 1753
NspI RCATGY 3 cut(s) 52, 447, 639
PaeR7I CTCGAG 1 cut(s) 273
PciI ACATGT 2 cut(s) 48, 443
PfeI GAWTC 5 cut(s) 170, 550, 689, 1202, 1352
PflMI CCANNNNNTGG 3 cut(s) 925, 1018, 1592
PfoI TCCNGGA 1 cut(s) 918
PkrI GCNGC 6 cut(s) 63, 95, 313, 316, 1257, 1506
PleI GAGTC 2 cut(s) 43, 295
PpsI GAGTC 2 cut(s) 43, 295
PpuMI RGGWCCY 1 cut(s) 861
PscI ACATGT 2 cut(s) 48, 443
Psp5II RGGWCCY 1 cut(s) 861
Psp6I CCWGG 3 cut(s) 474, 918, 1011
PspFI CCCAGC 1 cut(s) 1312
PspGI CCWGG 3 cut(s) 474, 918, 1011
PspN4I GGNNCC 5 cut(s) 519, 862, 863, 1597, 1647
PspPI GGNCC 3 cut(s) 861, 1009, 1103
PspPPI RGGWCCY 1 cut(s) 861
PstNI CAGNNNCTG 1 cut(s) 12
PsuI RGATCY 6 cut(s) 454, 560, 725, 792, 1399, 1450
PvuII CAGCTG 2 cut(s) 64, 1507
RsaI GTAC 4 cut(s) 77, 215, 590, 1597
RsaNI GTAC 4 cut(s) 76, 214, 589, 1596
RseI CAYNNNNRTG 1 cut(s) 640
SaqAI TTAA 6 cut(s) 500, 678, 801, 1169, 1209, 1283
SatI GCNGC 6 cut(s) 62, 94, 312, 315, 1256, 1505
Sau96I GGNCC 3 cut(s) 861, 1009, 1103
SchI GAGTC 2 cut(s) 44, 295
ScrFI CCNGG 3 cut(s) 476, 920, 1013
SduI GDGCHC 1 cut(s) 997
SfaNI GCATC 3 cut(s) 420, 513, 1600
Sfr274I CTCGAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 861, 1009
SlaI CTCGAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 640
SmlI CTYRAG 3 cut(s) 273, 1621, 1640
SmoI CTYRAG 3 cut(s) 273, 1621, 1640
Sse9I AATT 9 cut(s) 427, 742, 825, 1033, 1193, 1280, 1373, 1705, 1802
SsiI CCGC 4 cut(s) 93, 314, 317, 1600
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 3 cut(s) 474, 918, 1011
TaaI ACNGT 6 cut(s) 812, 1092, 1174, 1217, 1656, 1753
TaqI TCGA 4 cut(s) 274, 484, 948, 1230
TasI AATT 9 cut(s) 427, 742, 825, 1033, 1193, 1280, 1373, 1705, 1802
TatI WGTACW 2 cut(s) 75, 588
TauI GCSGC 2 cut(s) 96, 317
TfiI GAWTC 5 cut(s) 170, 550, 689, 1202, 1352
Tru1I TTAA 6 cut(s) 500, 678, 801, 1169, 1209, 1283
Tru9I TTAA 6 cut(s) 500, 678, 801, 1169, 1209, 1283
TscAI CASTG 5 cut(s) 196, 224, 841, 997, 1188
TseFI GTSAC 4 cut(s) 703, 1317, 1699, 1753
TseI GCWGC 4 cut(s) 61, 311, 1255, 1504
Tsp45I GTSAC 4 cut(s) 703, 1317, 1699, 1753
TspDTI ATGAA 5 cut(s) 138, 219, 882, 1167, 1365
TspGWI ACGGA 1 cut(s) 1195
TspRI CASTG 5 cut(s) 196, 224, 841, 997, 1188
Van91I CCANNNNNTGG 3 cut(s) 925, 1018, 1592
VpaK11BI GGWCC 2 cut(s) 861, 1009
XapI RAATTY 5 cut(s) 742, 1193, 1373, 1705, 1802
XceI RCATGY 3 cut(s) 52, 447, 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XhoI CTCGAG 1 cut(s) 273
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.