Rh7AG093900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
7194867 .. 7199236
4370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG093900.1

Sequence Viewer

Length: 1764 bp
ATGTCGTTTTTGCAGCTGAAGATCGTGTACACGCCTAGTCCAAGCGGCAACTTCAGTCTGCGAGACTTCCACCACGCCGTGAACGGCTTGCCGGAAAGTTCATTCCAGCCTCAGATGGACGATTCCGATGTGAAGCTTTCCAGTGTTATCAATGATGAAGTATTGTACCACTGGGGAGGTAGAGATATAATGAGGAAAGTGATCGTGATCACCTCCTGCTTGCCTCGAGATGTGGACTTTATCATGCAAAAGACTCTCACGGCTGCGGCGGATAAGTGTGTTTCTGTTGAGTTTCTATTATTTGAGCAAAAATCAGCCCATCTCAGCAATGTAAAAGAGAATATCAAGAGTTTCGTAACTTGCATCTCCGAGCTTGATAATTGCTCATTTCAAACATGTCTCCCAGATCCCAGAGTATTGCATGGCCTGGTAAATCGATGGTTACAGGATTTAAAGGATGACATTGAGGAACCGATGCAAGCTCGTTTCAACTTTAAGCAGAATCTTGTGGGATCTGTGAACCACTTATCATGCAACTTGTACATATCTGTCAGCCAGATGGTTGATGGTTTCTATCCCTGTCAGACATGCAGATGTCATGGCATTTCTCTGGAAGACGCTGTTTTAGTTAAAACAGAGGAATCTTGTTGTCCAGTCACAGGGCGTAATATCGGAAGATCTGATGTCATAGGAAATTCTGTGAAAGTTGGAGAAAAAACAATCCTGTTGCTACCCTCATTCCAGATCCCTGTTAAGCTCAAGCGTGCTTCTTCACCAATTGACTTCAGTGTCATTGAGAGGGCTAACTTGGGGTCCCTAAGTGAAGGTGTTGTAATGGGAGCTTCATATGTTGTCATTCCATCAACTTTCCAGGAAATGGAAACTGCTTCAGATGAGATTGATCAGTCAGATGTGAATAATGAGCTTTTCCGAGGGATTTGCAGTGCTCTACATTCAATGGACCAGGGTTTGGTGTGTTCTTCAAATTGTAATATAGAAACTATGAGGGAGACCACTTTGCTCTGCTATTATATTCTCCAACCGTCAGACAACGGGCCAATGCTTCTCAGGCGCATTGCTGGATCAGAGGAACTTTTGCACATTCCTGATCTCAATCAGTTAACTGTTTCATCAGTGAGGAAGGAATTTGAGGATTCCGTTAAAGACTGTTTGTCAAAGATCGACAAAAGAGACTATAACCCAATGCTGCATGAGAGGGGCTTCCATCAGAAATTAAACTTGCTTGTAAAGAAGAGCTTACTGCTGGGGTCACTATCCCCTAATGTGGAAGAGGATATCTATGAATCAAATGCAACCCAACTGAAATTTTCAGAAGTGGTAGGGCAGTCAGATCCAACAATAGATATTGAAGCCATCCGAGAAGAAACCTCAAAGTTGGTGGATCTGACAGCCGAAGAAGATAAAACATCGGCTTGCATTACAGAAGAGTGGGAGCAGCTGGTTGTGAATGATGTCTCCAAGTTACATTCTCCAGTTTGCACTTCCAAACCTAAGCCAGATCAGTCAGTTCAATCACCACCAGATGGTACCCGCCAACTTGATGCAAAGACCTCAAGGATTTTAGAGAGACTTGAGGTGCCAAGACAGTTCCGAAGAGAACCACTTTCACCAAATCTAAGAAGCAAAGGTGTGACGAATTCAAATGTTCAGGTAAAGAAGCCTTTACTCCCTTCCAAGCCTACTGTGACTAATAGCCAACTAATAAAACCGAACTTCCAAAGGCTAAAAAGGAAATTCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

587

Amino Acids

65.84

Weight (kDa)

5.68

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 788
Acc65I GGTACC 1 cut(s) 1547
AccB1I GGYRCC 2 cut(s) 1547, 1597
AccB7I CCANNNNNTGG 3 cut(s) 877, 970, 1544
AciI CCGC 4 cut(s) 45, 266, 269, 1552
AclWI GGATC 6 cut(s) 401, 520, 739, 1090, 1346, 1410
AcsI RAATTY 5 cut(s) 694, 1145, 1325, 1657, 1754
AcuI CTGAAG 4 cut(s) 37, 38, 769, 873
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 4 cut(s) 29, 167, 542, 1549
AfiI CCNNNNNNNGG 5 cut(s) 659, 877, 970, 1285, 1544
AflIII ACRYGT 1 cut(s) 395
AgsI TTSAA 8 cut(s) 392, 490, 957, 984, 1370, 1532, 1662, 1759
AhdI GACNNNNNGTC 1 cut(s) 1171
AjnI CCWGG 3 cut(s) 426, 870, 963
AluBI AGCT 9 cut(s) 16, 136, 373, 482, 757, 842, 925, 1257, 1459
AluI AGCT 9 cut(s) 16, 136, 373, 482, 757, 842, 925, 1257, 1459
Alw21I GWGCWC 1 cut(s) 949
Alw26I GTCTC 6 cut(s) 57, 404, 1004, 1185, 1480, 1582
AlwI GGATC 6 cut(s) 401, 520, 739, 1090, 1346, 1410
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 2 cut(s) 424, 1055
ApeKI GCWGC 4 cut(s) 13, 263, 1207, 1456
ApoI RAATTY 5 cut(s) 694, 1145, 1325, 1657, 1754
Asp718I GGTACC 1 cut(s) 1547
AspLEI GCGC 1 cut(s) 1074
AspS9I GGNCC 3 cut(s) 813, 961, 1055
AsuHPI GGTGA 4 cut(s) 202, 765, 1527, 1620
AvaI CYCGRG 1 cut(s) 225
AvaII GGWCC 2 cut(s) 813, 961
BanI GGYRCC 2 cut(s) 1547, 1597
BarI GAAGNNNNNNTAC 2 cut(s) 11, 43
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 949
BbvI GCAGC 4 cut(s) 25, 250, 1194, 1468
BccI CCATC 9 cut(s) 109, 327, 432, 553, 560, 868, 1233, 1382, 1538
BceAI ACGGC 3 cut(s) 62, 100, 276
BcgI CGANNNNNNTGC 2 cut(s) 921, 955
BciT130I CCWGG 3 cut(s) 428, 872, 965
BclI TGATCA 2 cut(s) 207, 901
BcoDI GTCTC 6 cut(s) 57, 404, 1004, 1185, 1480, 1582
BfaI CTAG 1 cut(s) 36
BglII AGATCT 1 cut(s) 677
BisI GCNGC 6 cut(s) 14, 46, 264, 267, 1208, 1457
BlsI GCNGC 6 cut(s) 15, 47, 265, 268, 1209, 1458
Bme1390I CCNGG 3 cut(s) 428, 872, 965
Bme18I GGWCC 2 cut(s) 813, 961
BmeRI GACNNNNNGTC 1 cut(s) 1171
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 3 cut(s) 813, 961, 1055
BmiI GGNNCC 5 cut(s) 471, 814, 815, 1549, 1599
BmrFI CCNGG 3 cut(s) 428, 872, 965
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 3 cut(s) 372, 465, 1552
BmuI ACTGGG 1 cut(s) 181
BpiI GAAGAC 1 cut(s) 621
BpmI CTGGAG 1 cut(s) 1476
Bpu10I CCTNAGC 1 cut(s) 1512
BpuEI CTTGAG 3 cut(s) 743, 1558, 1613
Bsa29I ATCGAT 1 cut(s) 436
BsaBI GATNNNNATC 2 cut(s) 206, 1113
BsaI GGTCTC 1 cut(s) 1004
BsaJI CCNNGG 2 cut(s) 931, 964
Bsc4I CCNNNNNNNGG 5 cut(s) 659, 877, 970, 1285, 1544
Bse1I ACTGG 4 cut(s) 141, 176, 653, 1493
Bse3DI GCAATG 2 cut(s) 334, 1074
Bse8I GATNNNNATC 2 cut(s) 206, 1113
BseBI CCWGG 3 cut(s) 428, 872, 965
BseCI ATCGAT 1 cut(s) 436
BseDI CCNNGG 2 cut(s) 931, 964
BseGI GGATG 2 cut(s) 463, 1374
BseJI GATNNNNATC 2 cut(s) 206, 1113
BseLI CCNNNNNNNGG 5 cut(s) 659, 877, 970, 1285, 1544
BseMI GCAATG 2 cut(s) 334, 1074
BseMII CTCAG 3 cut(s) 125, 337, 1081
BseNI ACTGG 4 cut(s) 141, 176, 653, 1493
BseXI GCAGC 4 cut(s) 25, 250, 1194, 1468
BseYI CCCAGC 1 cut(s) 1264
BshFI GGCC 2 cut(s) 426, 1057
BshNI GGYRCC 2 cut(s) 1547, 1597
BshVI ATCGAT 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 949
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 5 cut(s) 659, 877, 970, 1285, 1544
BsmAI GTCTC 6 cut(s) 57, 404, 1004, 1185, 1480, 1582
BsmFI GGGAC 1 cut(s) 799
BsnI GGCC 2 cut(s) 426, 1057
Bso31I GGTCTC 1 cut(s) 1004
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 949
Bsp1407I TGTACA 2 cut(s) 27, 540
BspACI CCGC 4 cut(s) 45, 266, 269, 1552
BspANI GGCC 2 cut(s) 426, 1057
BspCNI CTCAG 3 cut(s) 124, 336, 1080
BspDI ATCGAT 1 cut(s) 436
BspLI GGNNCC 5 cut(s) 471, 814, 815, 1549, 1599
BspPI GGATC 6 cut(s) 401, 520, 739, 1090, 1346, 1410
BspQI GCTCTTC 1 cut(s) 1247
BspT107I GGYRCC 2 cut(s) 1547, 1597
BspTNI GGTCTC 1 cut(s) 1004
BsrDI GCAATG 2 cut(s) 334, 1074
BsrGI TGTACA 2 cut(s) 27, 540
BsrI ACTGG 4 cut(s) 141, 176, 653, 1493
BssECI CCNNGG 2 cut(s) 931, 964
Bst2UI CCWGG 3 cut(s) 428, 872, 965
Bst4CI ACNGT 5 cut(s) 1044, 1126, 1169, 1608, 1705
Bst6I CTCTTC 4 cut(s) 1247, 1284, 1440, 1609
BstAUI TGTACA 2 cut(s) 27, 540
BstC8I GCNNGC 5 cut(s) 89, 221, 480, 765, 1435
BstDEI CTNAG 6 cut(s) 111, 323, 818, 1067, 1512, 1637
BstF5I GGATG 2 cut(s) 463, 1374
BstHHI GCGC 1 cut(s) 1074
BstMAI GTCTC 6 cut(s) 57, 404, 1004, 1185, 1480, 1582
BstMWI GCNNNNNNNGC 1 cut(s) 1069
BstNI CCWGG 3 cut(s) 428, 872, 965
BstNSI RCATGY 2 cut(s) 399, 591
BstSCI CCNGG 3 cut(s) 426, 870, 963
BstV1I GCAGC 4 cut(s) 25, 250, 1194, 1468
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 6 cut(s) 406, 512, 677, 744, 1351, 1402
BstYI RGATCY 6 cut(s) 406, 512, 677, 744, 1351, 1402
Bsu15I ATCGAT 1 cut(s) 436
BsuRI GGCC 2 cut(s) 426, 1057
BsuTUI ATCGAT 1 cut(s) 436
BtsCI GGATG 2 cut(s) 463, 1374
BtsI GCAGTG 1 cut(s) 949
BtsIMutI CAGTG 5 cut(s) 148, 169, 793, 949, 1140
Cac8I GCNNGC 5 cut(s) 89, 221, 480, 765, 1435
CfoI GCGC 1 cut(s) 1074
Cfr13I GGNCC 3 cut(s) 813, 961, 1055
ClaI ATCGAT 1 cut(s) 436
CseI GACGC 1 cut(s) 626
Csp6I GTAC 4 cut(s) 28, 166, 541, 1548
CspCI CAANNNNNGTGG 2 cut(s) 1380, 1415
CviAII CATG 7 cut(s) 244, 396, 422, 531, 588, 599, 1211
CviQI GTAC 4 cut(s) 28, 166, 541, 1548
DdeI CTNAG 6 cut(s) 111, 323, 818, 1067, 1512, 1637
DraI TTTAAA 1 cut(s) 453
DraIII CACNNNGTG 1 cut(s) 79
DrdI GACNNNNNNGTC 1 cut(s) 788
DriI GACNNNNNGTC 1 cut(s) 1171
DseDI GACNNNNNNGTC 1 cut(s) 788
Eam1104I CTCTTC 4 cut(s) 1247, 1284, 1440, 1609
Eam1105I GACNNNNNGTC 1 cut(s) 1171
EarI CTCTTC 4 cut(s) 1247, 1284, 1440, 1609
EciI GGCGGA 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 1004
Eco32I GATATC 1 cut(s) 1297
Eco47I GGWCC 2 cut(s) 813, 961
Eco57I CTGAAG 4 cut(s) 37, 38, 769, 873
Eco88I CYCGRG 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 813
EcoRI GAATTC 1 cut(s) 1657
EcoRII CCWGG 3 cut(s) 426, 870, 963
EcoRV GATATC 1 cut(s) 1297
FaeI CATG 7 cut(s) 247, 399, 425, 534, 591, 602, 1214
FalI AAGNNNNNCTT 2 cut(s) 1241, 1273
FaqI GGGAC 1 cut(s) 799
FatI CATG 7 cut(s) 243, 395, 421, 530, 587, 598, 1210
FauI CCCGC 1 cut(s) 1559
FauNDI CATATG 1 cut(s) 847
FbaI TGATCA 2 cut(s) 207, 901
Fnu4HI GCNGC 6 cut(s) 14, 46, 264, 267, 1208, 1457
FokI GGATG 2 cut(s) 470, 1361
Fsp4HI GCNGC 6 cut(s) 14, 46, 264, 267, 1208, 1457
FspBI CTAG 1 cut(s) 36
GlaI GCGC 1 cut(s) 1073
GluI GCNGC 6 cut(s) 14, 46, 264, 267, 1208, 1457
GsaI CCCAGC 1 cut(s) 1268
GsuI CTGGAG 1 cut(s) 1476
HaeIII GGCC 2 cut(s) 426, 1057
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 1074
Hin1II CATG 7 cut(s) 247, 399, 425, 534, 591, 602, 1214
Hin6I GCGC 1 cut(s) 1072
HinP1I GCGC 1 cut(s) 1072
HincII GTYRAC 1 cut(s) 1122
HindII GTYRAC 1 cut(s) 1122
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 6 cut(s) 122, 253, 502, 641, 1154, 1304
HpaI GTTAAC 1 cut(s) 1122
HpaII CCGG 1 cut(s) 92
HphI GGTGA 4 cut(s) 202, 765, 1527, 1620
Hpy166II GTNNAC 6 cut(s) 28, 30, 82, 235, 520, 1122
Hpy188III TCNNGA 6 cut(s) 205, 227, 346, 611, 742, 1106
Hpy8I GTNNAC 6 cut(s) 28, 30, 82, 235, 520, 1122
HpyAV CCTTC 3 cut(s) 818, 1135, 1701
HpyCH4III ACNGT 5 cut(s) 1044, 1126, 1169, 1608, 1705
HpyF10VI GCNNNNNNNGC 1 cut(s) 1069
HpyF3I CTNAG 6 cut(s) 111, 323, 818, 1067, 1512, 1637
Hsp92II CATG 7 cut(s) 247, 399, 425, 534, 591, 602, 1214
HspAI GCGC 1 cut(s) 1072
KflI GGGWCCC 1 cut(s) 813
KpnI GGTACC 1 cut(s) 1551
Ksp22I TGATCA 2 cut(s) 207, 901
KspAI GTTAAC 1 cut(s) 1122
LguI GCTCTTC 1 cut(s) 1247
LmnI GCTCC 2 cut(s) 839, 1453
Lsp1109I GCAGC 4 cut(s) 25, 250, 1194, 1468
LweI GCATC 3 cut(s) 372, 465, 1552
MaeI CTAG 1 cut(s) 36
MaeIII GTNAC 7 cut(s) 355, 441, 655, 1269, 1482, 1651, 1705
MfeI CAATTG 1 cut(s) 777
MflI RGATCY 6 cut(s) 406, 512, 677, 744, 1351, 1402
MhlI GDGCHC 1 cut(s) 949
MluCI AATT 9 cut(s) 379, 694, 777, 985, 1145, 1232, 1325, 1657, 1754
MlyI GAGTC 1 cut(s) 247
MmeI TCCRAC 3 cut(s) 688, 1063, 1379
MseI TTAA 7 cut(s) 452, 495, 630, 753, 1121, 1161, 1235
MslI CAYNNNNRTG 1 cut(s) 592
MspA1I CMGCKG 2 cut(s) 16, 1459
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 3 cut(s) 428, 872, 965
MunI CAATTG 1 cut(s) 777
MvaI CCWGG 3 cut(s) 428, 872, 965
MwoI GCNNNNNNNGC 1 cut(s) 1069
NdeI CATATG 1 cut(s) 847
NlaIII CATG 7 cut(s) 247, 399, 425, 534, 591, 602, 1214
NlaIV GGNNCC 5 cut(s) 471, 814, 815, 1549, 1599
NmuCI GTSAC 4 cut(s) 655, 1269, 1651, 1705
NspI RCATGY 2 cut(s) 399, 591
PaeR7I CTCGAG 1 cut(s) 225
PciI ACATGT 1 cut(s) 395
PciSI GCTCTTC 1 cut(s) 1247
PfeI GAWTC 5 cut(s) 122, 502, 641, 1154, 1304
PflMI CCANNNNNTGG 3 cut(s) 877, 970, 1544
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 6 cut(s) 15, 47, 265, 268, 1209, 1458
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PpuMI RGGWCCY 1 cut(s) 813
PscI ACATGT 1 cut(s) 395
Psp5II RGGWCCY 1 cut(s) 813
Psp6I CCWGG 3 cut(s) 426, 870, 963
PspFI CCCAGC 1 cut(s) 1264
PspGI CCWGG 3 cut(s) 426, 870, 963
PspN4I GGNNCC 5 cut(s) 471, 814, 815, 1549, 1599
PspPI GGNCC 3 cut(s) 813, 961, 1055
PspPPI RGGWCCY 1 cut(s) 813
PsuI RGATCY 6 cut(s) 406, 512, 677, 744, 1351, 1402
PvuII CAGCTG 2 cut(s) 16, 1459
RsaI GTAC 4 cut(s) 29, 167, 542, 1549
RsaNI GTAC 4 cut(s) 28, 166, 541, 1548
RseI CAYNNNNRTG 1 cut(s) 592
SapI GCTCTTC 1 cut(s) 1247
SaqAI TTAA 7 cut(s) 452, 495, 630, 753, 1121, 1161, 1235
SatI GCNGC 6 cut(s) 14, 46, 264, 267, 1208, 1457
Sau96I GGNCC 3 cut(s) 813, 961, 1055
SchI GAGTC 1 cut(s) 247
ScrFI CCNGG 3 cut(s) 428, 872, 965
SduI GDGCHC 1 cut(s) 949
SfaNI GCATC 3 cut(s) 372, 465, 1552
Sfr274I CTCGAG 1 cut(s) 225
SinI GGWCC 2 cut(s) 813, 961
SlaI CTCGAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 592
SmlI CTYRAG 4 cut(s) 225, 758, 1573, 1592
SmoI CTYRAG 4 cut(s) 225, 758, 1573, 1592
Sse9I AATT 9 cut(s) 379, 694, 777, 985, 1145, 1232, 1325, 1657, 1754
SsiI CCGC 4 cut(s) 45, 266, 269, 1552
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 426, 870, 963
TaaI ACNGT 5 cut(s) 1044, 1126, 1169, 1608, 1705
TaqI TCGA 3 cut(s) 226, 436, 1182
TasI AATT 9 cut(s) 379, 694, 777, 985, 1145, 1232, 1325, 1657, 1754
TatI WGTACW 2 cut(s) 27, 540
TauI GCSGC 2 cut(s) 48, 269
TfiI GAWTC 5 cut(s) 122, 502, 641, 1154, 1304
Tru1I TTAA 7 cut(s) 452, 495, 630, 753, 1121, 1161, 1235
Tru9I TTAA 7 cut(s) 452, 495, 630, 753, 1121, 1161, 1235
TscAI CASTG 5 cut(s) 148, 176, 793, 949, 1140
TseFI GTSAC 4 cut(s) 655, 1269, 1651, 1705
TseI GCWGC 4 cut(s) 13, 263, 1207, 1456
Tsp45I GTSAC 4 cut(s) 655, 1269, 1651, 1705
TspDTI ATGAA 5 cut(s) 90, 171, 834, 1119, 1317
TspGWI ACGGA 1 cut(s) 1147
TspRI CASTG 5 cut(s) 148, 176, 793, 949, 1140
Van91I CCANNNNNTGG 3 cut(s) 877, 970, 1544
VpaK11BI GGWCC 2 cut(s) 813, 961
XapI RAATTY 5 cut(s) 694, 1145, 1325, 1657, 1754
XceI RCATGY 2 cut(s) 399, 591
XcmI CCANNNNNNNNNTGG 1 cut(s) 563
XhoI CTCGAG 1 cut(s) 225
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.