Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008750.1

Orthogroup ID

OG0007115

Physical Location & Seq

Genomic Coordinates Forward (+)

40568 .. 45580

Gene Structure 5013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008750.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1683 bp

atggtagagctttgctttgtactcgatctccggagcttaccgccttcatttctcagagacttaaagcagtcgctgttacagctcgctaatctctacgcgatttcgccgtcgccggcttggcgcaagtcggagccgctccgagatcggataggcctttgcttcgtcttcaaaaatccgatcaactcttccgatcagctgaagatcgtgtacacgcctagtccaagcggcaacttcagtctgcgagacttccaccacgccgtgaacggcttgccggaaagttcattccagcctcagatggacgattccgatgtgaagctttccagtgttatcaatgatgaagtattgtaccactggggaggtagagatataatgaggaaagtgatcgtgatcacctcctgcttgcctcgagatgtggactttatcatgcaaaagactctcacggctgcggcggataagtgtgtttctgttgagtttctattatttgagcaaaaatcagcccatctcagcaatgtaaaagagaatatcaagagtttcgatttaaaggatgacattgaggaaccgatgcaagctcgtttcaacttcaagcagaatcttgtgggatctgtgaaccacttatcatgcaacttgtacatatctgtcaaccagatggttgatggtttctatccctgtcagactgaaaacctaactgacatagccaatgtgattgattcagaggaacttacttccaatattaatatttggttgataatgtttggaccatcgttgcttcaagaacattatgtgtcaatattgaaccataatcttggtgcagctacgctatgtcatggcatttctctggaagacgctgttttagttaaaacagaggaatcttgttgtccagtcacagggcgtaatatcggaagatctgatgtcataggaaattctgtgaaagttggagaaaaaacaatcctgttgctaccctcattccagatccctgttaagctcaagcgtgcttcttcaccaattgacttcagtgtcattgagaggactaacttggggtccctaagtgaaggtgttgtaatgggagcttcatatgttgtcattccatcaactttccaggaaatggaaactgcttcagatgagattgatcagtcagatgtgaataatgagcgtatgtcggaggctttcctcttgttttctggtttggggtcactatcccctaatgtggaagaggatatctatgaatcaaatgcaacccaaccgaaattttcagaagtggtagggcagtcagatccaacaatagatattgaagccatccgagaagaaacctcaaagttggtggatctgacagccgaagaagataaaacatcggcttgcattacagaagagtgggagcagctggttgtgaatgatgtctctaagttacattctccagtttgcacttccaaacctaagtcagatcagtcagttcaatcaccaccagatggtacccgccaacttgatgcaaagacctcaaggattttagagagacttgaggtgccaagacagttccgaagagaaccactttcaccaaatctaagaagcaaaggtgtgacgaattcaaatgttcaggtaaagaagcctttactcccttccaagcctactgtgactaatagccaactaataaaaccgaacttccaaaggctaaaaaggaaattcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

560

Amino Acids

62.54

Weight (kDa)

5.25

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07380 AT5G07380 AT5G07380 AT5G07380 AT5G07380 AT5G07380
fragaria_vesca	FvH4_5g10000 FvH4_5g10000 FvH4_5g10000 FvH4_5g10000
malus_domestica	MD06G1128600.v1.1
prunus_persica	Prupe.5G138400_v2.0.a1 Prupe.5G138400_v2.0.a1 Prupe.5G138400_v2.0.a1
pyrus_communis	pycom06g11900
rosa_chinensis	RchiOBHm_Chr7g0188261
rosa_laevigata	RLG00000004713
rosa_multiflora	Rmu_sc0008750.1_g000010
rosa_roxburghii	Rroxscaffold_3G00266550
rosa_rugosa	Rorug06G0489500
rosa_samantha	Rh7AG093900 Rh7BG095300 Rh7CG095700 Rh7DG095900
rosa_wichuraiana	Rw7G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1013
Acc65I	GGTACC	1 cut(s)	1466
AccB1I	GGYRCC	2 cut(s)	1466, 1516
AccB7I	CCANNNNNTGG	2 cut(s)	1102, 1463
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	30
AciI	CCGC	6 cut(s)	41, 134, 225, 446, 449, 1471
AclWI	GGATC	4 cut(s)	607, 964, 1265, 1329
AcsI	RAATTY	4 cut(s)	919, 1244, 1576, 1673
AcuI	CTGAAG	4 cut(s)	217, 218, 994, 1098
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	5 cut(s)	21, 209, 347, 629, 1468
AfiI	CCNNNNNNNGG	4 cut(s)	884, 1102, 1204, 1463
AgsI	TTSAA	9 cut(s)	169, 577, 583, 770, 793, 1289, 1451, 1581, 1678
AjnI	CCWGG	1 cut(s)	1095
Alw26I	GTCTC	4 cut(s)	51, 237, 1399, 1501
AlwI	GGATC	4 cut(s)	607, 964, 1265, 1329
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	405
Aor13HI	TCCGGA	1 cut(s)	30
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	3 cut(s)	443, 809, 1375
ApoI	RAATTY	4 cut(s)	919, 1244, 1576, 1673
AseI	ATTAAT	1 cut(s)	732
Asp718I	GGTACC	1 cut(s)	1466
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	2 cut(s)	755, 1038
AsuHPI	GGTGA	4 cut(s)	382, 990, 1446, 1539
AvaI	CYCGRG	1 cut(s)	405
AvaII	GGWCC	2 cut(s)	755, 1038
BanI	GGYRCC	2 cut(s)	1466, 1516
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	2 cut(s)	157, 846
BbvI	GCAGC	3 cut(s)	430, 821, 1387
BccI	CCATC	8 cut(s)	289, 507, 640, 647, 766, 1093, 1301, 1457
BceAI	ACGGC	4 cut(s)	91, 242, 280, 456
BciT130I	CCWGG	1 cut(s)	1097
BclI	TGATCA	2 cut(s)	387, 1126
BcoDI	GTCTC	4 cut(s)	51, 237, 1399, 1501
BfaI	CTAG	1 cut(s)	216
BglI	GCCNNNNNGGC	1 cut(s)	118
BglII	AGATCT	1 cut(s)	902
BisI	GCNGC	6 cut(s)	134, 226, 444, 447, 810, 1376
BlsI	GCNGC	6 cut(s)	135, 227, 445, 448, 811, 1377
Bme1390I	CCNGG	1 cut(s)	1097
Bme18I	GGWCC	2 cut(s)	755, 1038
BmeT110I	CYCGRG	1 cut(s)	405
BmgT120I	GGNCC	2 cut(s)	755, 1038
BmiI	GGNNCC	6 cut(s)	132, 558, 1039, 1040, 1468, 1518
BmrFI	CCNGG	1 cut(s)	1097
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	2 cut(s)	552, 1471
BmuI	ACTGGG	1 cut(s)	361
BpiI	GAAGAC	2 cut(s)	157, 846
BpmI	CTGGAG	1 cut(s)	1395
BpuEI	CTTGAG	3 cut(s)	968, 1477, 1532
BsaBI	GATNNNNATC	1 cut(s)	386
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	4 cut(s)	884, 1102, 1204, 1463
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	4 cut(s)	321, 356, 878, 1412
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	386
BseAI	TCCGGA	1 cut(s)	30
BseBI	CCWGG	1 cut(s)	1097
BseGI	GGATG	2 cut(s)	550, 1293
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	4 cut(s)	884, 1102, 1204, 1463
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	3 cut(s)	67, 305, 517
BseNI	ACTGG	4 cut(s)	321, 356, 878, 1412
BseXI	GCAGC	3 cut(s)	430, 821, 1387
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	2 cut(s)	1466, 1516
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	3 cut(s)	31, 113, 272
BslFI	GGGAC	1 cut(s)	1024
BslI	CCNNNNNNNGG	4 cut(s)	884, 1102, 1204, 1463
BsmAI	GTCTC	4 cut(s)	51, 237, 1399, 1501
BsmFI	GGGAC	1 cut(s)	1024
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	405
Bsp13I	TCCGGA	1 cut(s)	30
Bsp1407I	TGTACA	2 cut(s)	207, 627
BspACI	CCGC	6 cut(s)	41, 134, 225, 446, 449, 1471
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	3 cut(s)	66, 304, 516
BspEI	TCCGGA	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	98
BspLI	GGNNCC	6 cut(s)	132, 558, 1039, 1040, 1468, 1518
BspPI	GGATC	4 cut(s)	607, 964, 1265, 1329
BspT107I	GGYRCC	2 cut(s)	1466, 1516
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	112
BsrGI	TGTACA	2 cut(s)	207, 627
BsrI	ACTGG	4 cut(s)	321, 356, 878, 1412
BssAI	RCCGGY	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	1097
Bst4CI	ACNGT	2 cut(s)	1527, 1624
Bst6I	CTCTTC	4 cut(s)	190, 1203, 1359, 1528
BstAUI	TGTACA	2 cut(s)	207, 627
BstC8I	GCNNGC	7 cut(s)	84, 114, 269, 401, 567, 990, 1354
BstDEI	CTNAG	7 cut(s)	53, 291, 503, 1043, 1398, 1431, 1556
BstF5I	GGATG	2 cut(s)	550, 1293
BstFNI	CGCG	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	123
BstMAI	GTCTC	4 cut(s)	51, 237, 1399, 1501
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 118
BstNI	CCWGG	1 cut(s)	1097
BstSCI	CCNGG	1 cut(s)	1095
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	430, 821, 1387
BstV2I	GAAGAC	2 cut(s)	157, 846
BstX2I	RGATCY	5 cut(s)	599, 902, 969, 1270, 1321
BstXI	CCANNNNNNTGG	1 cut(s)	803
BstYI	RGATCY	5 cut(s)	599, 902, 969, 1270, 1321
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	550, 1293
BtsIMutI	CAGTG	3 cut(s)	328, 349, 1018
Cac8I	GCNNGC	7 cut(s)	84, 114, 269, 401, 567, 990, 1354
CaiI	CAGNNNCTG	1 cut(s)	73
CfoI	GCGC	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	112
Cfr13I	GGNCC	2 cut(s)	755, 1038
CseI	GACGC	1 cut(s)	851
Csp6I	GTAC	5 cut(s)	20, 208, 346, 628, 1467
CspCI	CAANNNNNGTGG	2 cut(s)	1299, 1334
CviAII	CATG	3 cut(s)	424, 618, 824
CviQI	GTAC	5 cut(s)	20, 208, 346, 628, 1467
DdeI	CTNAG	7 cut(s)	53, 291, 503, 1043, 1398, 1431, 1556
DraI	TTTAAA	1 cut(s)	540
DraIII	CACNNNGTG	1 cut(s)	259
DrdI	GACNNNNNNGTC	1 cut(s)	1013
DseDI	GACNNNNNNGTC	1 cut(s)	1013
Eam1104I	CTCTTC	4 cut(s)	190, 1203, 1359, 1528
EarI	CTCTTC	4 cut(s)	190, 1203, 1359, 1528
EciI	GGCGGA	1 cut(s)	464
Eco147I	AGGCCT	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	1216
Eco47I	GGWCC	2 cut(s)	755, 1038
Eco57I	CTGAAG	4 cut(s)	217, 218, 994, 1098
Eco88I	CYCGRG	1 cut(s)	405
EcoO109I	RGGNCCY	1 cut(s)	1038
EcoRI	GAATTC	1 cut(s)	1576
EcoRII	CCWGG	1 cut(s)	1095
EcoRV	GATATC	1 cut(s)	1216
FaeI	CATG	3 cut(s)	427, 621, 827
FaqI	GGGAC	1 cut(s)	1024
FatI	CATG	3 cut(s)	423, 617, 823
FauI	CCCGC	1 cut(s)	1478
FauNDI	CATATG	1 cut(s)	1072
FbaI	TGATCA	2 cut(s)	387, 1126
Fnu4HI	GCNGC	6 cut(s)	134, 226, 444, 447, 810, 1376
FokI	GGATG	2 cut(s)	557, 1280
Fsp4HI	GCNGC	6 cut(s)	134, 226, 444, 447, 810, 1376
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	122
GluI	GCNGC	6 cut(s)	134, 226, 444, 447, 810, 1376
GsuI	CTGGAG	1 cut(s)	1395
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	3 cut(s)	31, 113, 272
HgaI	GACGC	1 cut(s)	851
HhaI	GCGC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	427, 621, 827
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	6 cut(s)	302, 433, 589, 707, 866, 1223
HpaII	CCGG	3 cut(s)	31, 113, 272
HphI	GGTGA	4 cut(s)	382, 990, 1446, 1539
Hpy166II	GTNNAC	6 cut(s)	208, 210, 262, 415, 607, 640
Hpy188III	TCNNGA	7 cut(s)	31, 385, 407, 526, 770, 836, 967
Hpy8I	GTNNAC	6 cut(s)	208, 210, 262, 415, 607, 640
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	54, 1043, 1620
HpyCH4III	ACNGT	2 cut(s)	1527, 1624
HpyCH4V	TGCA	8 cut(s)	427, 565, 621, 809, 1232, 1356, 1419, 1484
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 118
HpyF3I	CTNAG	7 cut(s)	53, 291, 503, 1043, 1398, 1431, 1556
Hsp92II	CATG	3 cut(s)	427, 621, 827
HspAI	GCGC	1 cut(s)	121
KflI	GGGWCCC	1 cut(s)	1038
Kpn2I	TCCGGA	1 cut(s)	30
KpnI	GGTACC	1 cut(s)	1470
KroI	GCCGGC	1 cut(s)	112
KroNI	GCCGGC	1 cut(s)	114
Ksp22I	TGATCA	2 cut(s)	387, 1126
LmnI	GCTCC	5 cut(s)	33, 130, 141, 1064, 1372
Lsp1109I	GCAGC	3 cut(s)	430, 821, 1387
LweI	GCATC	2 cut(s)	552, 1471
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	6 cut(s)	75, 880, 1188, 1401, 1570, 1624
MbiI	CCGCTC	1 cut(s)	136
MfeI	CAATTG	1 cut(s)	1002
MflI	RGATCY	5 cut(s)	599, 902, 969, 1270, 1321
MluCI	AATT	5 cut(s)	919, 1002, 1244, 1576, 1673
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	4 cut(s)	108, 913, 1137, 1298
MroI	TCCGGA	1 cut(s)	30
MroNI	GCCGGC	1 cut(s)	112
MseI	TTAA	5 cut(s)	62, 539, 732, 855, 978
MspA1I	CMGCKG	2 cut(s)	196, 1378
MspI	CCGG	3 cut(s)	31, 113, 272
MspR9I	CCNGG	1 cut(s)	1097
MunI	CAATTG	1 cut(s)	1002
MvaI	CCWGG	1 cut(s)	1097
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	79, 118
NaeI	GCCGGC	1 cut(s)	114
NdeI	CATATG	1 cut(s)	1072
NgoMIV	GCCGGC	1 cut(s)	112
NlaIII	CATG	3 cut(s)	427, 621, 827
NlaIV	GGNNCC	6 cut(s)	132, 558, 1039, 1040, 1468, 1518
NmuCI	GTSAC	4 cut(s)	880, 1188, 1570, 1624
PaeR7I	CTCGAG	1 cut(s)	405
PceI	AGGCCT	1 cut(s)	153
PdiI	GCCGGC	1 cut(s)	114
PfeI	GAWTC	5 cut(s)	302, 589, 707, 866, 1223
PflMI	CCANNNNNTGG	2 cut(s)	1102, 1463
PfoI	TCCNGGA	1 cut(s)	1095
PkrI	GCNGC	6 cut(s)	135, 227, 445, 448, 811, 1377
PleI	GAGTC	1 cut(s)	427
PpsI	GAGTC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	1038
PshBI	ATTAAT	1 cut(s)	732
Psp5II	RGGWCCY	1 cut(s)	1038
Psp6I	CCWGG	1 cut(s)	1095
PspGI	CCWGG	1 cut(s)	1095
PspN4I	GGNNCC	6 cut(s)	132, 558, 1039, 1040, 1468, 1518
PspPI	GGNCC	2 cut(s)	755, 1038
PspPPI	RGGWCCY	1 cut(s)	1038
PstNI	CAGNNNCTG	1 cut(s)	73
PsuI	RGATCY	5 cut(s)	599, 902, 969, 1270, 1321
PvuII	CAGCTG	2 cut(s)	196, 1378
RsaI	GTAC	5 cut(s)	21, 209, 347, 629, 1468
RsaNI	GTAC	5 cut(s)	20, 208, 346, 628, 1467
SaqAI	TTAA	5 cut(s)	62, 539, 732, 855, 978
SatI	GCNGC	6 cut(s)	134, 226, 444, 447, 810, 1376
Sau96I	GGNCC	2 cut(s)	755, 1038
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	1097
SfaNI	GCATC	2 cut(s)	552, 1471
Sfr274I	CTCGAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	755, 1038
SlaI	CTCGAG	1 cut(s)	405
SmlI	CTYRAG	4 cut(s)	405, 983, 1492, 1511
SmoI	CTYRAG	4 cut(s)	405, 983, 1492, 1511
Sse9I	AATT	5 cut(s)	919, 1002, 1244, 1576, 1673
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	6 cut(s)	41, 134, 225, 446, 449, 1471
SspI	AATATT	3 cut(s)	730, 736, 789
SspMI	CTAG	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	1095
TaaI	ACNGT	2 cut(s)	1527, 1624
TaqI	TCGA	3 cut(s)	24, 406, 534
TasI	AATT	5 cut(s)	919, 1002, 1244, 1576, 1673
TatI	WGTACW	3 cut(s)	19, 207, 627
TauI	GCSGC	3 cut(s)	136, 228, 449
TfiI	GAWTC	5 cut(s)	302, 589, 707, 866, 1223
Tru1I	TTAA	5 cut(s)	62, 539, 732, 855, 978
Tru9I	TTAA	5 cut(s)	62, 539, 732, 855, 978
TscAI	CASTG	3 cut(s)	328, 356, 1018
TseFI	GTSAC	4 cut(s)	880, 1188, 1570, 1624
TseI	GCWGC	3 cut(s)	443, 809, 1375
Tsp45I	GTSAC	4 cut(s)	880, 1188, 1570, 1624
TspDTI	ATGAA	5 cut(s)	36, 270, 351, 1059, 1236
TspRI	CASTG	3 cut(s)	328, 356, 1018
Van91I	CCANNNNNTGG	2 cut(s)	1102, 1463
VpaK11BI	GGWCC	2 cut(s)	755, 1038
VspI	ATTAAT	1 cut(s)	732
XapI	RAATTY	4 cut(s)	919, 1244, 1576, 1673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XhoI	CTCGAG	1 cut(s)	405
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.