RchiOBHm_Chr7g0189661

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0019977
Physical Location & Seq
Forward (+)
8924976 .. 8926923
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16940

Sequence Viewer

Length: 588 bp
ATGAGAAATCTTGTCTTCATTGTGTGTCGAGTACTTGCTGTTGTTTGTGTGGTGTATACAATACTCTTGCTTTGTCCCAAGTGCAGACGGGAACTTACTGGCCACAAGCTCAGAGTGATGCTGATTAAAATTAGAAGAGTGGTCAGAAAATACTACTACTACTACTCTGATTCAAAGGCAGAGGAGAGGTGGTCTAATGGTCTCCCACAAGAAATCTTGCTATTGATTTTACAAAGGCTATGCATATCGGATTACCTTGGGGAACCAAGTATGTGTTTCTTGGCGAGCTGCTGTGGAGATGGGTGTTGCTACCAAGAGTTGCCTTCCTCATATTCTATATGTGCATCACTTTTGAAGGTTCAAACTCCCCCGCCCTTCACACTTTCAAGCGTCGGCCAGCACTGCTGTCTGCAAAAAGATGAAACTTGGAGAGTAAATGTTCGGATACAAGGGTGTGATCTTGAGAATGGTTACCTGTGTGGAACCATGGAAGCACTTAATGTTCCCATGGCTGACACACCAAAACTGTTGTATCTTCATCATAGGAAGCCTTCATTGAGGATTTACTTTCTTTTCATTGTGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

195

Amino Acids

22.55

Weight (kDa)

8.8

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189661
rosa_laevigata RLG00000024615
rosa_rugosa Rorug03G0078400
rosa_samantha Rh3CG146600 Rh3DG146500 Rh7DG107100
rosa_wichuraiana Rw7G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 56
AciI CCGC 1 cut(s) 371
AcoI YGGCCR 2 cut(s) 100, 394
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 4 cut(s) 174, 355, 362, 387
AluBI AGCT 2 cut(s) 109, 288
AluI AGCT 2 cut(s) 109, 288
Alw26I GTCTC 1 cut(s) 206
AoxI GGCC 2 cut(s) 100, 394
ApeKI GCWGC 1 cut(s) 288
BaeI ACNNNNGTAYC 4 cut(s) 437, 470, 515, 548
BalI TGGCCA 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 7
BbvI GCAGC 1 cut(s) 275
BccI CCATC 1 cut(s) 293
BciVI GTATCC 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 206
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 1 cut(s) 289
BlsI GCNGC 1 cut(s) 290
BmcAI AGTACT 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 264, 484
BmsI GCATC 2 cut(s) 108, 353
BpiI GAAGAC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 482
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 256, 486, 507
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bse1I ACTGG 1 cut(s) 103
BseDI CCNNGG 3 cut(s) 256, 486, 507
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 275
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 396
BslFI GGGAC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 102, 396
Bso31I GGTCTC 1 cut(s) 206
Bsp143I GATC 1 cut(s) 457
Bsp19I CCATGG 2 cut(s) 486, 507
BspACI CCGC 1 cut(s) 371
BspANI GGCC 2 cut(s) 102, 396
BspCNI CTCAG 1 cut(s) 123
BspLI GGNNCC 2 cut(s) 264, 484
BspTNI GGTCTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 3 cut(s) 256, 486, 507
BssMI GATC 1 cut(s) 457
BssNAI GTATAC 1 cut(s) 57
BssT1I CCWWGG 3 cut(s) 256, 486, 507
Bst1107I GTATAC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 286, 398
BstDEI CTNAG 1 cut(s) 110
BstDSI CCRYGG 2 cut(s) 486, 507
BstEII GGTNACC 1 cut(s) 470
BstKTI GATC 1 cut(s) 460
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 457
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstPI GGTNACC 1 cut(s) 470
BstV1I GCAGC 1 cut(s) 275
BstV2I GAAGAC 1 cut(s) 7
BstZ17I GTATAC 1 cut(s) 57
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 102, 396
BtgI CCRYGG 2 cut(s) 486, 507
BtsI GCAGTG 1 cut(s) 400
BtsIMutI CAGTG 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 286, 398
CseI GACGC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 32
CviAII CATG 2 cut(s) 487, 508
CviJI RGCY 7 cut(s) 102, 109, 238, 288, 396, 512, 550
CviKI_1 RGCY 7 cut(s) 102, 109, 238, 288, 396, 512, 550
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 459
DpnII GATC 1 cut(s) 457
EaeI YGGCCR 2 cut(s) 100, 394
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 256, 486, 507
Eco31I GGTCTC 1 cut(s) 206
Eco91I GGTNACC 1 cut(s) 470
EcoO65I GGTNACC 1 cut(s) 470
EcoT14I CCWWGG 3 cut(s) 256, 486, 507
EcoT22I ATGCAT 1 cut(s) 245
ErhI CCWWGG 3 cut(s) 256, 486, 507
FaeI CATG 2 cut(s) 490, 511
FaqI GGGAC 1 cut(s) 60
FatI CATG 2 cut(s) 486, 507
FauI CCCGC 1 cut(s) 378
FblI GTMKAC 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 289
HaeIII GGCC 2 cut(s) 102, 396
HgaI GACGC 1 cut(s) 379
Hin1II CATG 2 cut(s) 490, 511
HinfI GANTC 1 cut(s) 170
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 5 cut(s) 113, 146, 169, 250, 444
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 4 cut(s) 333, 349, 385, 561
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 4 cut(s) 84, 243, 344, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 2 cut(s) 490, 511
Kzo9I GATC 1 cut(s) 457
LpnPI CCDG 3 cut(s) 84, 410, 488
Lsp1109I GCAGC 1 cut(s) 275
LweI GCATC 2 cut(s) 108, 353
MaeIII GTNAC 1 cut(s) 470
MalI GATC 1 cut(s) 459
MboI GATC 1 cut(s) 457
MboII GAAGA 3 cut(s) 7, 147, 527
MlsI TGGCCA 1 cut(s) 102
MluCI AATT 1 cut(s) 129
MluNI TGGCCA 1 cut(s) 102
MnlI CCTC 4 cut(s) 175, 180, 337, 552
Mox20I TGGCCA 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 245
MscI TGGCCA 1 cut(s) 102
MseI TTAA 2 cut(s) 126, 498
Msp20I TGGCCA 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 402
NcoI CCATGG 2 cut(s) 486, 507
NdeII GATC 1 cut(s) 457
NlaIII CATG 2 cut(s) 490, 511
NlaIV GGNNCC 2 cut(s) 264, 484
NsiI ATGCAT 1 cut(s) 245
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 290
PspEI GGTNACC 1 cut(s) 470
PspN4I GGNNCC 2 cut(s) 264, 484
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 126, 498
SatI GCNGC 1 cut(s) 289
Sau3AI GATC 1 cut(s) 457
ScaI AGTACT 1 cut(s) 33
SetI ASST 6 cut(s) 111, 191, 258, 290, 360, 477
SfaNI GCATC 2 cut(s) 108, 353
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 371
StyI CCWWGG 3 cut(s) 256, 486, 507
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 28
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 2 cut(s) 126, 498
Tru9I TTAA 2 cut(s) 126, 498
TscAI CASTG 1 cut(s) 407
TseI GCWGC 1 cut(s) 288
TspDTI ATGAA 5 cut(s) 7, 435, 527, 543, 565
TspRI CASTG 1 cut(s) 407
XmiI GTMKAC 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.