RLG00000024615

Glucose-induced degradation protein 4 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0019977
Physical Location & Seq
Reverse (-)
37487987 .. 37489592
1606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024615

Sequence Viewer

Length: 516 bp
ATGAGAAATCTTGTCTTCATTGTGTGTCGAGTACTTGCTATTGTTTGTGTGGTGTGCACAATGCTCTTGCTTTGTCCCAAGTGCAGACAGGAACTTACTGGCCGCAAGCTCAGAGTGATGCTGATTAAAATTAGAAGAGTGGTCAGAAAATACTACTACTACTACTACTACTACTACTACTACTCTGATTCAAAGGCAGAGGAGAGGTGGTCTAATGGTCTCCCACAAGAAATCTTGCTATTGATTTTACAAAGGCTATGCATATCGGATTACCTTGGGGAACCAAGTGTGTGTTTCTTGGCGAGCTGCTGTGGAGATGGGTGGTGCTACCAAGAGTTGCCTTCCTCATATTCTATATGTGCATCACTTTTGAAGGTTCAAACTCCCCCGCCCTTCACACTTTTAAGCGTCGGCCAGGTCATCACCTTTTGGGAAGGGGAGATTGTTGACACCAGGAATTATACTTTCTTCACTGAGAAGTGGGAAGCAACACAAGATGATGATATAAGGCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Vac_ImportDeg

Protein Analysis

172

Amino Acids

20.18

Weight (kDa)

7.96

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vac_ImportDeg PF09783 139 - 171 4.9e-06 Vacuolar import and degradation protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019977)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0189661
rosa_laevigata RLG00000024615
rosa_rugosa Rorug03G0078400
rosa_samantha Rh3CG146600 Rh3DG146500 Rh7DG107100
rosa_wichuraiana Rw7G009010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 103, 389
AcoI YGGCCR 2 cut(s) 100, 412
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 3 cut(s) 192, 373, 380
AjnI CCWGG 2 cut(s) 414, 452
AluBI AGCT 2 cut(s) 109, 306
AluI AGCT 2 cut(s) 109, 306
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 224
Alw44I GTGCAC 1 cut(s) 55
AoxI GGCC 2 cut(s) 100, 412
ApaLI GTGCAC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 306
AsuHPI GGTGA 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 7
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 416, 454
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 514
BisI GCNGC 2 cut(s) 103, 307
BlsI GCNGC 2 cut(s) 104, 308
BmcAI AGTACT 1 cut(s) 33
Bme1390I CCNGG 2 cut(s) 416, 454
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 416, 454
BmsI GCATC 2 cut(s) 108, 371
BpiI GAAGAC 1 cut(s) 7
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bse1I ACTGG 1 cut(s) 103
BseBI CCWGG 2 cut(s) 416, 454
BseDI CCNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 124, 465
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 414
BsiHKAI GWGCWC 1 cut(s) 59
BslFI GGGAC 1 cut(s) 60
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 2 cut(s) 102, 414
Bso31I GGTCTC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 59
BspACI CCGC 2 cut(s) 103, 389
BspANI GGCC 2 cut(s) 102, 414
BspCNI CTCAG 2 cut(s) 123, 466
BspLI GGNNCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 274
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 2 cut(s) 416, 454
Bst6I CTCTTC 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 107, 304
BstDEI CTNAG 2 cut(s) 110, 474
BstMAI GTCTC 1 cut(s) 224
BstNI CCWGG 2 cut(s) 416, 454
BstSCI CCNGG 2 cut(s) 414, 452
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 7
BsuRI GGCC 2 cut(s) 102, 414
BtsIMutI CAGTG 1 cut(s) 471
Cac8I GCNNGC 2 cut(s) 107, 304
CseI GACGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 32
CviJI RGCY 5 cut(s) 102, 109, 256, 306, 414
CviKI_1 RGCY 5 cut(s) 102, 109, 256, 306, 414
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 110, 474
EaeI YGGCCR 2 cut(s) 100, 412
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 274
Eco31I GGTCTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 414, 452
EcoT14I CCWWGG 1 cut(s) 274
EcoT22I ATGCAT 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 274
FaiI YATR 7 cut(s) 259, 263, 349, 356, 358, 462, 506
FaqI GGGAC 1 cut(s) 60
FauI CCCGC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 103, 307
Fsp4HI GCNGC 2 cut(s) 103, 307
FspBI CTAG 1 cut(s) 514
GluI GCNGC 2 cut(s) 103, 307
HaeIII GGCC 2 cut(s) 102, 414
HgaI GACGC 1 cut(s) 397
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 1 cut(s) 188
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 57, 448
Hpy188I TCNGA 4 cut(s) 113, 146, 187, 268
Hpy8I GTNNAC 2 cut(s) 57, 448
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 4 cut(s) 351, 367, 403, 428
HpyCH4V TGCA 4 cut(s) 57, 84, 261, 362
HpyF3I CTNAG 2 cut(s) 110, 474
LpnPI CCDG 6 cut(s) 74, 84, 401, 428, 439, 466
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 2 cut(s) 108, 371
MaeI CTAG 1 cut(s) 514
MboII GAAGA 3 cut(s) 7, 147, 460
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 129, 457
MnlI CCTC 3 cut(s) 193, 198, 355
Mph1103I ATGCAT 1 cut(s) 263
MseI TTAA 2 cut(s) 126, 404
MspR9I CCNGG 2 cut(s) 416, 454
MvaI CCWGG 2 cut(s) 416, 454
NlaIV GGNNCC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 263
PfeI GAWTC 1 cut(s) 188
PkrI GCNGC 2 cut(s) 104, 308
Psp6I CCWGG 2 cut(s) 414, 452
PspGI CCWGG 2 cut(s) 414, 452
PspN4I GGNNCC 1 cut(s) 282
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SaqAI TTAA 2 cut(s) 126, 404
SatI GCNGC 2 cut(s) 103, 307
ScaI AGTACT 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 416, 454
SduI GDGCHC 1 cut(s) 59
SetI ASST 7 cut(s) 111, 209, 276, 308, 378, 420, 428
SfaNI GCATC 2 cut(s) 108, 371
Sse9I AATT 2 cut(s) 129, 457
SsiI CCGC 2 cut(s) 103, 389
SspMI CTAG 1 cut(s) 514
StyD4I CCNGG 2 cut(s) 414, 452
StyI CCWWGG 1 cut(s) 274
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 129, 457
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 126, 404
Tru9I TTAA 2 cut(s) 126, 404
TscAI CASTG 1 cut(s) 478
TseI GCWGC 1 cut(s) 306
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 478
VneI GTGCAC 1 cut(s) 55
XspI CTAG 1 cut(s) 514
ZrmI AGTACT 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.